Cmc08g0227411 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227411
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	ATP-dependent RNA helicase RhlB
Location	CMiso1.1chr08: 20477213 .. 20479657 (+)
RNA-Seq Expression	Cmc08g0227411
Synteny	Cmc08g0227411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAATAAACCAAACAAATTTCTATTACTTCCCTTGTTCTTTCTTTCAAAAAAAAGTCAGGAGTCACAATCTACACTTCAATTCCGAATGAAACAGAATGTATCTCTTACATTTACACCATCCATCCATCCATCCGTTGTCAAGAATTGATAGTAAAACAACAACAGTGAAATTAGTTTTGGATTTAAAAAAATAATATATATCATTTATAGAATTCAAGAGTGTGCAGCACAACGCCAAAAACCATGCCTTGTTCTTCACTATTTTTTACATTTTTTTCCTTCTATACTTTCCCTATAATGGAAAAAGAAAAACAGCAAAATTATTGTATTGTGTATCTTGATTGATCAATCAAGAACAACAAGCTTCTGGTACTCATTGCCGGAGATAGCTTGCTCCATGACGGCTTCCGGTTGAATGACGCCATCACCATCCAAAAACAAGTTCATCAAGTTCTTTGAGTATCCACTGACCAAAGCCACCCCCTTCTCCTTGCCCGGCACTGGCGTCGCCCTCGAATCTCTTAAGTTCCAAAACACAATCTGTGGAACAGCTGATCCATACCCTTTTTCTGTGAATTTTCTGACTATAACTTGGTAATCTGTTTCCCACGAGGTGGCTGATGCTTGATCGAACTCCATGTCACTGAACACAAACACTCTCTTTATCATTTGTTCTTCCTTCAACTTTCCATCTACAGCCACTTTGAGAATTTGATCAAAAACCTTCTGAAAATCAGTATTAACCCCCCAATGCATCGTCTTAACGAACTCCGCTTTTGATTTCAGACTGTCCCCTTGGATCACATGAAGTTCTGGGTTTGCACTGAATGTGATCACTTTCCCTTTCCATGGATCTTCGCTCAATTCAGAAACCAAAAGACCCAAAGCAATACAAACATCCATGGGAATCCCCTCCATACTTCCGGACACATCACAAACAGCAATACAGTCTCTCAACTTCCCTTTCTTCAACAAGTCATCCACCATTCTCTTCCATTGAAGCTCTGCAACTTCTCCACCGTCTTCCTGTCCGTCGAATAAAGACATTATGATCTCGTGAGGAAGCAGTGCTCCGGCGGCGATCTTGGTCTTACCGTCCTTCACGTCTTTCAAGTATTGGGCAAACCGCTCCCCATCGTGTTTCATGAACTTTTCCTTGTAGTTTTTCATTGCAACAGAAGCTACTCTGTTGTAAGGGATCGAATCCCATCGATTGGCTCCAATGTAAACCTCCGGCAGCTCCAAAACCTTCCGGAGTGGCACCAAAACATCCTTCCTCAATCTGTCGCGAACTCTGTACGCATAGTGCGCCTCTTCAATCCCTTCGTATTCTGGATCCGATTCGCGAGGGAAAACTTTCCGCGCTATGCTCTCGCAGAGTAGTGTCGATCGATCAAAGGACGAATCGACGGAAGGGCACCATTTCGCAGCGAGACTGATTCTCGTGAAATCTCCGGAATTCATAAATTGAAGATCAGATTTCAAGCAATCAGTGAAGAAGTCAGAGATTCGATCGTGCAAGAGTTGGAAATTTGGATCAGATTGGAAACGTTCCATAACCTTCCTCGCCATCGAAACCTTCCTTAACTTCCTCTCTGCGCTCGCCTTCTCTTTTTCTATCCTCGATTTCTCCATTGCCTTCGAAATGTTGGCCTCCCTGTCTATTGAAGATTGAATTTCTTTCTTCCTCGTCTTCGGTTTCTCTTGCTTGAAGCTTCCATATCTGACAGATAGCCCCCCTCTCCTAGGCGACGACAATCTCTTTCGACTCTTACCTTTCCTCTCCCCCCACTCTTTCTTCTGATTCTTCCTCACATCGGAACCCTCAAGAAGCCGGTAGAGTATCTCCGGCAGATCCTTGAAATAACCGAAATCAGCGATAGAAGGAATGTTACCTGCTAGGGTTTTGGGATGAAAGTTGTAGAGCCAGAGCGCGGCCGTGTAGTATCCCTCTTTATCGGACTTTCCCGTACCACGAACTCCTCGCAGGTTACAGATGAGCTTGAGCGTCATCAAGGGATTATGATTCCAAGCCAAACTCAATCTGTCGATCAAAGAAATGGCAGGGGTATCAGGAACCACATGGAAGAAGAAATCAAGGCAAGGATTGCCGGTGGAGAGAAAGGTCGCCGACATATTCTCCGTGAAGCCCATGGGCGGCAGGTTGTCATCGGAGTGGTTATTGATGTTGTTGAAGTTGGCGAGCATTGCATCGACGAAGGGGACTCCAGAGGGGGTTGATTCCGTTGGTTGGAGTGAGACGGGGGCTGATTCCGTTGGTTGGAGTGAGACGGGGGAAGCGGCGAGGTAGAGCTCCGGGGGACCGAGAAGGCTTGGAGGAGCCATGGGAATGGGCAAGGAGAAATCGGCAAGGAATGAGGATTTAATGAAAGGTTATGGGTTTCATTTCATTTATTGACAATTTGATGCTTCGGGACCAAGA

mRNA sequence

CCAAATAAACCAAACAAATTTCTATTACTTCCCTTGTTCTTTCTTTCAAAAAAAAGTCAGGAGTCACAATCTACACTTCAATTCCGAATGAAACAGAATGTATCTCTTACATTTACACCATCCATCCATCCATCCGTTGTCAAGAATTGATAGTAAAACAACAACAGTGAAATTAGTTTTGGATTTAAAAAAATAATATATATCATTTATAGAATTCAAGAGTGTGCAGCACAACGCCAAAAACCATGCCTTGTTCTTCACTATTTTTTACATTTTTTTCCTTCTATACTTTCCCTATAATGGAAAAAGAAAAACAGCAAAATTATTGTATTGTGTATCTTGATTGATCAATCAAGAACAACAAGCTTCTGGTACTCATTGCCGGAGATAGCTTGCTCCATGACGGCTTCCGGTTGAATGACGCCATCACCATCCAAAAACAAGTTCATCAAGTTCTTTGAGTATCCACTGACCAAAGCCACCCCCTTCTCCTTGCCCGGCACTGGCGTCGCCCTCGAATCTCTTAAGTTCCAAAACACAATCTGTGGAACAGCTGATCCATACCCTTTTTCTGTGAATTTTCTGACTATAACTTGGTAATCTGTTTCCCACGAGGTGGCTGATGCTTGATCGAACTCCATGTCACTGAACACAAACACTCTCTTTATCATTTGTTCTTCCTTCAACTTTCCATCTACAGCCACTTTGAGAATTTGATCAAAAACCTTCTGAAAATCAGTATTAACCCCCCAATGCATCGTCTTAACGAACTCCGCTTTTGATTTCAGACTGTCCCCTTGGATCACATGAAGTTCTGGGTTTGCACTGAATGTGATCACTTTCCCTTTCCATGGATCTTCGCTCAATTCAGAAACCAAAAGACCCAAAGCAATACAAACATCCATGGGAATCCCCTCCATACTTCCGGACACATCACAAACAGCAATACAGTCTCTCAACTTCCCTTTCTTCAACAAGTCATCCACCATTCTCTTCCATTGAAGCTCTGCAACTTCTCCACCGTCTTCCTGTCCGTCGAATAAAGACATTATGATCTCGTGAGGAAGCAGTGCTCCGGCGGCGATCTTGGTCTTACCGTCCTTCACGTCTTTCAAGTATTGGGCAAACCGCTCCCCATCGTGTTTCATGAACTTTTCCTTGTAGTTTTTCATTGCAACAGAAGCTACTCTGTTGTAAGGGATCGAATCCCATCGATTGGCTCCAATGTAAACCTCCGGCAGCTCCAAAACCTTCCGGAGTGGCACCAAAACATCCTTCCTCAATCTGTCGCGAACTCTGTACGCATAGTGCGCCTCTTCAATCCCTTCGTATTCTGGATCCGATTCGCGAGGGAAAACTTTCCGCGCTATGCTCTCGCAGAGTAGTGTCGATCGATCAAAGGACGAATCGACGGAAGGGCACCATTTCGCAGCGAGACTGATTCTCGTGAAATCTCCGGAATTCATAAATTGAAGATCAGATTTCAAGCAATCAGTGAAGAAGTCAGAGATTCGATCGTGCAAGAGTTGGAAATTTGGATCAGATTGGAAACGTTCCATAACCTTCCTCGCCATCGAAACCTTCCTTAACTTCCTCTCTGCGCTCGCCTTCTCTTTTTCTATCCTCGATTTCTCCATTGCCTTCGAAATGTTGGCCTCCCTGTCTATTGAAGATTGAATTTCTTTCTTCCTCGTCTTCGGTTTCTCTTGCTTGAAGCTTCCATATCTGACAGATAGCCCCCCTCTCCTAGGCGACGACAATCTCTTTCGACTCTTACCTTTCCTCTCCCCCCACTCTTTCTTCTGATTCTTCCTCACATCGGAACCCTCAAGAAGCCGGTAGAGTATCTCCGGCAGATCCTTGAAATAACCGAAATCAGCGATAGAAGGAATGTTACCTGCTAGGGTTTTGGGATGAAAGTTGTAGAGCCAGAGCGCGGCCGTGTAGTATCCCTCTTTATCGGACTTTCCCGTACCACGAACTCCTCGCAGGTTACAGATGAGCTTGAGCGTCATCAAGGGATTATGATTCCAAGCCAAACTCAATCTGTCGATCAAAGAAATGGCAGGGGTATCAGGAACCACATGGAAGAAGAAATCAAGGCAAGGATTGCCGGTGGAGAGAAAGGTCGCCGACATATTCTCCGTGAAGCCCATGGGCGGCAGGTTGTCATCGGAGTGGTTATTGATGTTGTTGAAGTTGGCGAGCATTGCATCGACGAAGGGGACTCCAGAGGGGGTTGATTCCGTTGGTTGGAGTGAGACGGGGGCTGATTCCGTTGGTTGGAGTGAGACGGGGGAAGCGGCGAGGTAGAGCTCCGGGGGACCGAGAAGGCTTGGAGGAGCCATGGGAATGGGCAAGGAGAAATCGGCAAGGAATGAGGATTTAATGAAAGGTTATGGGTTTCATTTCATTTATTGACAATTTGATGCTTCGGGACCAAGA

Coding sequence (CDS)

ATGAAAGTTGTAGAGCCAGAGCGCGGCCGTGTAGTATCCCTCTTTATCGGACTTTCCCGTACCACGAACTCCTCGCAGGTTACAGATGAGCTTGAGCGTCATCAAGGGATTATGATTCCAAGCCAAACTCAATCTGTCGATCAAAGAAATGGCAGGGGTATCAGGAACCACATGGAAGAAGAAATCAAGGCAAGGATTGCCGGTGGAGAGAAAGGTCGCCGACATATTCTCCGTGAAGCCCATGGGCGGCAGGTTGTCATCGGAGTGGTTATTGATGTTGTTGAAGTTGGCGAGCATTGCATCGACGAAGGGGACTCCAGAGGGGGTTGA

Protein sequence

MKVVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCIDEGDSRGG

Homology

[Close]

BLAST of Cmc08g0227411 vs. NCBI nr
Match: GER26080.1 (ATP-dependent RNA helicase RhlB [Striga asiatica])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 42/107 (39.25%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 3   VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEI 62
           +V+P+R RV +L +GL+   N+S+V DEL+  Q ++ P + +++ +   R + + +EEE+
Sbjct: 254 LVDPQRRRVAALPVGLACAANASEVADELQGLQRVVFPGELEALCEGLRRRVGDDVEEEV 313

Query: 63  KARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCIDEGDSRGG 110
           +AR++G E+GRR +L E+HG +   G    +VEVG H + E  SRGG
Sbjct: 314 QARVSGREEGRREVLGESHGWEG--GRGRRLVEVGHHEVHEWISRGG 358

[Close]

BLAST of Cmc08g0227411 vs. NCBI nr
Match: GER26076.1 (translation initiation factor IF-3 [Striga asiatica])

HSP 1 Score: 68.2 bits (165), Expect = 5.1e-08
Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 3   VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEI 62
           +V+P+R RV +L +GL+   N+S+V DEL+  + ++ P + Q++ +   R + + +EEE+
Sbjct: 139 LVDPQRRRVAALPVGLAGAANASEVADELQGLKWVIFPGELQALCEGLLRRVGDDVEEEV 198

Query: 63  KARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCIDEGDSRGG 110
           KAR++G E+GRR IL +A G Q        +VEV  H + E  SRGG
Sbjct: 199 KARVSGREEGRREILGKAPGWQG--SRDRRLVEVCHHEVHERISRGG 243

[Close]

BLAST of Cmc08g0227411 vs. NCBI nr
Match: KAG6603286.1 (hypothetical protein SDJN03_03895, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 58  MEEEIKARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCIDEGDSRGG 110
           MEEEI+ARI+GGEK  RHILREAH RQ +I V ID+V VG   IDEG + GG
Sbjct: 1   MEEEIEARISGGEKRHRHILREAHRRQFII-VCIDLVLVGNKSIDEGVTGGG 51

[Close]

BLAST of Cmc08g0227411 vs. NCBI nr
Match: CAB3468472.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 54.3 bits (129), Expect = 7.6e-04
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 1   MKVVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEE 60
           ++VVEP+RG V  L + L+R  ++++V DELER + +  P     +    GR + +H+EE
Sbjct: 30  VEVVEPQRGGVEPLPVRLARAAHAAEVGDELERRERVARPRCGDELTHAGGRRVGDHVEE 89

Query: 61  EIKARIAGGEKGR----RHILREAHGRQVVIGV 90
           E++A +AG  +G     R  LR   G  V  GV
Sbjct: 90  EVEAGVAGVGEGAGRLPRRRLRGGGGGGVEAGV 122

[Close]

BLAST of Cmc08g0227411 vs. ExPASy TrEMBL
Match: A0A5A7P019 (ATP-dependent RNA helicase RhlB OS=Striga asiatica OX=4170 GN=STAS_01699 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 42/107 (39.25%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 3   VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEI 62
           +V+P+R RV +L +GL+   N+S+V DEL+  Q ++ P + +++ +   R + + +EEE+
Sbjct: 254 LVDPQRRRVAALPVGLACAANASEVADELQGLQRVVFPGELEALCEGLRRRVGDDVEEEV 313

Query: 63  KARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCIDEGDSRGG 110
           +AR++G E+GRR +L E+HG +   G    +VEVG H + E  SRGG
Sbjct: 314 QARVSGREEGRREVLGESHGWEG--GRGRRLVEVGHHEVHEWISRGG 358

[Close]

BLAST of Cmc08g0227411 vs. ExPASy TrEMBL
Match: A0A5A7NZZ3 (Translation initiation factor IF-3 OS=Striga asiatica OX=4170 GN=STAS_01698 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 3   VVEPERGRVVSLFIGLSRTTNSSQVTDELERHQGIMIPSQTQSVDQRNGRGIRNHMEEEI 62
           +V+P+R RV +L +GL+   N+S+V DEL+  + ++ P + Q++ +   R + + +EEE+
Sbjct: 139 LVDPQRRRVAALPVGLAGAANASEVADELQGLKWVIFPGELQALCEGLLRRVGDDVEEEV 198

Query: 63  KARIAGGEKGRRHILREAHGRQVVIGVVIDVVEVGEHCIDEGDSRGG 110
           KAR++G E+GRR IL +A G Q        +VEV  H + E  SRGG
Sbjct: 199 KARVSGREEGRREILGKAPGWQG--SRDRRLVEVCHHEVHERISRGG 243

The following BLAST results are available for this feature:

BLAST of Cmc08g0227411 vs. NCBI nr


Match Name	E-value	Identity	Description
GER26080.1	2.5e-10	39.25	ATP-dependent RNA helicase RhlB [Striga asiatica]	[more]
GER26076.1	5.1e-08	39.25	translation initiation factor IF-3 [Striga asiatica]	[more]
KAG6603286.1	1.6e-06	67.31	hypothetical protein SDJN03_03895, partial [Cucurbita argyrosperma subsp. sorori...	[more]
CAB3468472.1	7.6e-04	36.56	unnamed protein product [Digitaria exilis]	[more]

BLAST of Cmc08g0227411 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0227411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7P019	1.2e-10	39.25	ATP-dependent RNA helicase RhlB OS=Striga asiatica OX=4170 GN=STAS_01699 PE=4 SV...	[more]
A0A5A7NZZ3	2.5e-08	39.25	Translation initiation factor IF-3 OS=Striga asiatica OX=4170 GN=STAS_01698 PE=4...	[more]

BLAST of Cmc08g0227411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227411.1	Cmc08g0227411.1	mRNA