Cmc08g0227391 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227391
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	NBS-LRR type resistance protein
Location	CMiso1.1chr08: 20454319 .. 20454746 (+)
RNA-Seq Expression	Cmc08g0227391
Synteny	Cmc08g0227391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATATGCGATCAGGTGTTGGGTCGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCGCAGAACGGCAAGTGCAAGCAGTTCGTCGACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAGCTATGAAAAGATGATTGAAGACCTAACTCGTGCACAACAGGGACCACCACATGATCCCTAGCCCTGCGGTACGTCGTATATGTCTCTATTATTCTTAAGTTTTTGCAATATATAATTATGTATTAAACTTAGTTATTTTTATACCATTTTTAGGACCGAAGGTGTAGAATGACGCGCATACGCACCTCGTTGGGAGATTGGGT

mRNA sequence

ATGAGATATGCGATCAGGTGTTGGGTCGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCGCAGAACGGCAAGTGCAAGCAGTTCGTCGACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAGCTATGAAAAGATGATTGAAGACCTAACTCGTGCACAACAGGGACCACCACATGATCCCTAGCCCTGCGGACCGAAGGTGTAGAATGACGCGCATACGCACCTCGTTGGGAGATTGGGT

Coding sequence (CDS)

ATGAGATATGCGATCAGGTGTTGGGTCGACGACCAGGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGCCCGCAGAACGGCAAGTGCAAGCAGTTCGTCGACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTCATGAAGCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAG

Protein sequence

MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGLKYKIEITKH

Homology

[Close]

BLAST of Cmc08g0227391 vs. NCBI nr
Match: KAA0048671.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
           MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRH VRSPHKKRLNYKLNFMKLWNGL
Sbjct: 57  MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHFVRSPHKKRLNYKLNFMKLWNGL 116

Query: 61  KYKIEITKH 70
           KYKIEITKH
Sbjct: 117 KYKIEITKH 125

[Close]

BLAST of Cmc08g0227391 vs. NCBI nr
Match: KAA0048153.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 3.0e-30
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
           MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSP KKRLNYKLNFMKLWNGL
Sbjct: 878 MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPQKKRLNYKLNFMKLWNGL 937

Query: 61  KYKIEITKH 70
           KYKIEITKH
Sbjct: 938 KYKIEITKH 946

[Close]

BLAST of Cmc08g0227391 vs. NCBI nr
Match: TYK02447.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-28
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
          MRYAIRCWVDD ATQKALVGDPSRRP ER+VQAVRRHL+RSP KKRLNYKLNFMKLWNGL
Sbjct: 24 MRYAIRCWVDDHATQKALVGDPSRRPVERRVQAVRRHLIRSPQKKRLNYKLNFMKLWNGL 83

Query: 61 KYKIEITKH 70
          KYKIEITKH
Sbjct: 84 KYKIEITKH 92

[Close]

BLAST of Cmc08g0227391 vs. NCBI nr
Match: TYK05099.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
           MRYAIR WVDDQATQKALVGDPSRRPAER+VQAVRRHLVRSP KKRLNYKLNFMKLWNGL
Sbjct: 57  MRYAIRYWVDDQATQKALVGDPSRRPAERRVQAVRRHLVRSPQKKRLNYKLNFMKLWNGL 116

Query: 61  KYKIEITKH 70
           KYKIEITKH
Sbjct: 117 KYKIEITKH 125

[Close]

BLAST of Cmc08g0227391 vs. NCBI nr
Match: KAA0037656.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 3.7e-28
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
          MRYAIRCWVDDQATQKALVGDPSRRPAER+VQAVRRHLVRSP KKRLNYKLNF KLWN L
Sbjct: 24 MRYAIRCWVDDQATQKALVGDPSRRPAERRVQAVRRHLVRSPQKKRLNYKLNFKKLWNRL 83

Query: 61 KYKIEITKH 70
          KYKIEITKH
Sbjct: 84 KYKIEITKH 92

[Close]

BLAST of Cmc08g0227391 vs. ExPASy TrEMBL
Match: A0A5A7U512 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold670G00200 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.0e-31
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
           MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRH VRSPHKKRLNYKLNFMKLWNGL
Sbjct: 57  MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHFVRSPHKKRLNYKLNFMKLWNGL 116

Query: 61  KYKIEITKH 70
           KYKIEITKH
Sbjct: 117 KYKIEITKH 125

[Close]

BLAST of Cmc08g0227391 vs. ExPASy TrEMBL
Match: A0A5A7TX19 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00520 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
           MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSP KKRLNYKLNFMKLWNGL
Sbjct: 878 MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPQKKRLNYKLNFMKLWNGL 937

Query: 61  KYKIEITKH 70
           KYKIEITKH
Sbjct: 938 KYKIEITKH 946

[Close]

BLAST of Cmc08g0227391 vs. ExPASy TrEMBL
Match: A0A5D3BSP0 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00560 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.1e-29
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
          MRYAIRCWVDD ATQKALVGDPSRRP ER+VQAVRRHL+RSP KKRLNYKLNFMKLWNGL
Sbjct: 24 MRYAIRCWVDDHATQKALVGDPSRRPVERRVQAVRRHLIRSPQKKRLNYKLNFMKLWNGL 83

Query: 61 KYKIEITKH 70
          KYKIEITKH
Sbjct: 84 KYKIEITKH 92

[Close]

BLAST of Cmc08g0227391 vs. ExPASy TrEMBL
Match: A0A5D3C3Z9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00020 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.0e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
           MRYAIR WVDDQATQKALVGDPSRRPAER+VQAVRRHLVRSP KKRLNYKLNFMKLWNGL
Sbjct: 57  MRYAIRYWVDDQATQKALVGDPSRRPAERRVQAVRRHLVRSPQKKRLNYKLNFMKLWNGL 116

Query: 61  KYKIEITKH 70
           KYKIEITKH
Sbjct: 117 KYKIEITKH 125

[Close]

BLAST of Cmc08g0227391 vs. ExPASy TrEMBL
Match: A0A5A7T670 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G003190 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.8e-28
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHLVRSPHKKRLNYKLNFMKLWNGL 60
          MRYAIRCWVDDQATQKALVGDPSRRPAER+VQAVRRHLVRSP KKRLNYKLNF KLWN L
Sbjct: 24 MRYAIRCWVDDQATQKALVGDPSRRPAERRVQAVRRHLVRSPQKKRLNYKLNFKKLWNRL 83

Query: 61 KYKIEITKH 70
          KYKIEITKH
Sbjct: 84 KYKIEITKH 92

The following BLAST results are available for this feature:

BLAST of Cmc08g0227391 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048671.1	1.0e-30	98.55	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0048153.1	3.0e-30	98.55	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK02447.1	1.3e-28	92.75	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
TYK05099.1	1.7e-28	95.65	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0037656.1	3.7e-28	94.20	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227391 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0227391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U512	5.0e-31	98.55	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TX19	1.5e-30	98.55	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63...	[more]
A0A5D3BSP0	6.1e-29	92.75	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3C3Z9	8.0e-29	95.65	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7T670	1.8e-28	94.20	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Cmc08g0227391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227391.1	Cmc08g0227391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity