Cmc08g0227261 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227261
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr08: 20155173 .. 20155847 (-)
RNA-Seq Expression	Cmc08g0227261
Synteny	Cmc08g0227261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAACCAAAGACCGATCAATGTACGACCATATAAATATGGACATGTCCAGAAAGAAGAGATAGAGAATTTAGTGATTGAAATGCTACAAGATGGAATCATCCGACCAAGTCGTAGCCCGTATTCAAGCCCTGTTCTATTGGTTAAAAAGAAAGATGGAGGGTGGCGATTTTGTGTGGACTACCGAAAGTTGAATCAAGCTACAGTTTCAGACAAGTTTCTCATTCCAGTAATCGAAGAATTACTAGATGAACTGTATGGAGCTGCTGTATTCTCTAAATTGGACCTCAAATCAGGATACCACCAAATTAGAATGAAGGAGGAAGATATAGAAAAGACAACATTCCGCACCCATGAAGGCCACTATGAATTTCTGGTGATGCCTTTCGGTCTCACAAACGCTCCAGCAACATTCCAATCATTGATGAATAAGGTTTTTAAACCCTTCCTTAGACGTTGTGTTTTGGTATTCTTTGACGATATCTTAGTGTACAACAGTGACATAACTGAACACGAGAAACACCTAGGAATGGTTTTCGCCATGCTAAGGGATAATCGGCTCTATGCAAATCACAAGAAATGTGTCTTTGCTCATTCTAGAATCCAATATTTGGGACACCAAATATCCAAGGCAGGGGTGAAGCGGATGATGATAAAATTAGAAGTATGGTAA

mRNA sequence

ATGCCCAACCAAAGACCGATCAATGTACGACCATATAAATATGGACATGTCCAGAAAGAAGAGATAGAGAATTTAGTGATTGAAATGCTACAAGATGGAATCATCCGACCAAGTCGTAGCCCGTATTCAAGCCCTGTTCTATTGGTTAAAAAGAAAGATGGAGGGTGGCGATTTTGTGTGGACTACCGAAAGTTGAATCAAGCTACAGTTTCAGACAAGTTTCTCATTCCAGTAATCGAAGAATTACTAGATGAACTGTATGGAGCTGCTGTATTCTCTAAATTGGACCTCAAATCAGGATACCACCAAATTAGAATGAAGGAGGAAGATATAGAAAAGACAACATTCCGCACCCATGAAGGCCACTATGAATTTCTGGTGATGCCTTTCGGTCTCACAAACGCTCCAGCAACATTCCAATCATTGATGAATAAGGTTTTTAAACCCTTCCTTAGACGTTGTGTTTTGGTATTCTTTGACGATATCTTAGTGTACAACAGTGACATAACTGAACACGAGAAACACCTAGGAATGGTTTTCGCCATGCTAAGGGATAATCGGCTCTATGCAAATCACAAGAAATGTGTCTTTGCTCATTCTAGAATCCAATATTTGGGACACCAAATATCCAAGGCAGGGGTGAAGCGGATGATGATAAAATTAGAAGTATGGTAA

Coding sequence (CDS)

ATGCCCAACCAAAGACCGATCAATGTACGACCATATAAATATGGACATGTCCAGAAAGAAGAGATAGAGAATTTAGTGATTGAAATGCTACAAGATGGAATCATCCGACCAAGTCGTAGCCCGTATTCAAGCCCTGTTCTATTGGTTAAAAAGAAAGATGGAGGGTGGCGATTTTGTGTGGACTACCGAAAGTTGAATCAAGCTACAGTTTCAGACAAGTTTCTCATTCCAGTAATCGAAGAATTACTAGATGAACTGTATGGAGCTGCTGTATTCTCTAAATTGGACCTCAAATCAGGATACCACCAAATTAGAATGAAGGAGGAAGATATAGAAAAGACAACATTCCGCACCCATGAAGGCCACTATGAATTTCTGGTGATGCCTTTCGGTCTCACAAACGCTCCAGCAACATTCCAATCATTGATGAATAAGGTTTTTAAACCCTTCCTTAGACGTTGTGTTTTGGTATTCTTTGACGATATCTTAGTGTACAACAGTGACATAACTGAACACGAGAAACACCTAGGAATGGTTTTCGCCATGCTAAGGGATAATCGGCTCTATGCAAATCACAAGAAATGTGTCTTTGCTCATTCTAGAATCCAATATTTGGGACACCAAATATCCAAGGCAGGGGTGAAGCGGATGATGATAAAATTAGAAGTATGGTAA

Protein sequence

MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIKLEVW

Homology

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BLAST of Cmc08g0227261 vs. NCBI nr
Match: KAA0041185.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 456.1 bits (1172), Expect = 1.8e-124
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV
Sbjct: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE
Sbjct: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVY+SDITEHEKHLGMVF
Sbjct: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVF 180

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIKLEV 224
           AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIKLEV
Sbjct: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIKLEV 223

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BLAST of Cmc08g0227261 vs. NCBI nr
Match: TYK14624.1 (uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 420.6 bits (1080), Expect = 8.3e-114
Identity = 202/215 (93.95%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           +PNQRPINVRPYKYGHVQK EIENLV EMLQDGIIRPSRSPYSS VLLVKKKDGGWRFCV
Sbjct: 347 LPNQRPINVRPYKYGHVQKGEIENLVAEMLQDGIIRPSRSPYSSLVLLVKKKDGGWRFCV 406

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DYRKLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKT FRTHE
Sbjct: 407 DYRKLNQATVSDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHE 466

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDILVY+SD+TEHEKHLGM+F
Sbjct: 467 GHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDLTEHEKHLGMIF 526

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVK 216
           A+LRDN+LYANHKKCVFAHSRIQYLGHQISKAGV+
Sbjct: 527 AVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVE 561

[Close]

BLAST of Cmc08g0227261 vs. NCBI nr
Match: TYK29308.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 420.6 bits (1080), Expect = 8.3e-114
Identity = 202/215 (93.95%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           +PNQRPINVRPYKYGHVQK EIENLV EMLQDGIIRPSRSPYSS VLLVKKKDGGWRFCV
Sbjct: 347 LPNQRPINVRPYKYGHVQKGEIENLVAEMLQDGIIRPSRSPYSSLVLLVKKKDGGWRFCV 406

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DYRKLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKT FRTHE
Sbjct: 407 DYRKLNQATVSDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHE 466

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDILVY+SD+TEHEKHLGM+F
Sbjct: 467 GHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDLTEHEKHLGMIF 526

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVK 216
           A+LRDN+LYANHKKCVFAHSRIQYLGHQISKAGV+
Sbjct: 527 AVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVE 561

[Close]

BLAST of Cmc08g0227261 vs. NCBI nr
Match: TYK28905.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 415.6 bits (1067), Expect = 2.7e-112
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           MPNQRPINVRPYKYGHVQK EIE LV EMLQDGIIRPSRSPYSSPVLLVKKKDGGW FCV
Sbjct: 525 MPNQRPINVRPYKYGHVQKGEIEKLVTEMLQDGIIRPSRSPYSSPVLLVKKKDGGWWFCV 584

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DYRKLNQATVSDKF IP+IEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKT FRTHE
Sbjct: 585 DYRKLNQATVSDKFPIPIIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHE 644

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAP TFQSLMN+VFKPFLRRCVLVFFDDILVY+SDITEHEKHLGMVF
Sbjct: 645 GHYEFLVMPFGLTNAPTTFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVF 704

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVK 216
             LRDN+LYANHKKCVFAHS+IQYLGHQISKAGV+
Sbjct: 705 VELRDNQLYANHKKCVFAHSKIQYLGHQISKAGVE 739

[Close]

BLAST of Cmc08g0227261 vs. NCBI nr
Match: KAA0039128.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26985.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 415.2 bits (1066), Expect = 3.5e-112
Identity = 199/215 (92.56%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           +PNQ+PINVRPYKYGH+QK EIE LV EMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV
Sbjct: 592 LPNQKPINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 651

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DY KLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKT FRTHE
Sbjct: 652 DYWKLNQATVSDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHE 711

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDIL Y+SDITEH+KHLGMVF
Sbjct: 712 GHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILAYSSDITEHKKHLGMVF 771

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVK 216
           A+LRDN LYANHKKCVFAHSRIQYLGHQISKAGV+
Sbjct: 772 AVLRDNHLYANHKKCVFAHSRIQYLGHQISKAGVE 806

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BLAST of Cmc08g0227261 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-48
Identity = 95/222 (42.79%), Postives = 133/222 (59.91%), Query Frame = 0


Query: 6   PINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGG-----WRFCV 65
           PI  + Y      + E+EN V EML  G+IR S SPY+SP  +V KK        +R  +
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 66  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 125
           DYRKLN+ T+ D++ IP ++E+L +L     F+ +DL  G+HQI M EE I KT F T  
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 126 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 185
           GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+ DDI+++++ +TEH   + +VF
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

Query: 186 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIKLE 223
             L D  L     KC F      +LGH ++  G+K   IK++
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVK 427

[Close]

BLAST of Cmc08g0227261 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.0e-46
Identity = 92/216 (42.59%), Postives = 130/216 (60.19%), Query Frame = 0


Query: 12  YKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLN 71
           Y Y    ++E+E+ + +ML  GIIR S SPY+SP+ +V KK        +R  +DYRKLN
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 72  QATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFL 131
           + TV D+  IP ++E+L +L     F+ +DL  G+HQI M  E + KT F T  GHYE+L
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 132 VMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFAMLRDN 191
            MPFGL NAPATFQ  MN + +P L +  LV+ DDI+V+++ + EH + LG+VF  L   
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392

Query: 192 RLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIKLE 223
            L     KC F      +LGH ++  G+K    K+E
Sbjct: 393 NLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIE 428

[Close]

BLAST of Cmc08g0227261 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 186.4 bits (472), Expect = 3.5e-46
Identity = 96/208 (46.15%), Postives = 128/208 (61.54%), Query Frame = 0


Query: 2   PNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVD 61
           P  R   ++PY      ++EI  +V ++L +  I PS+SP SSPV+LV KKDG +R CVD
Sbjct: 592 PGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVD 651

Query: 62  YRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHEG 121
           YR LN+AT+SD F +P I+ LL  +  A +F+ LDL SGYHQI M+ +D  KT F T  G
Sbjct: 652 YRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSG 711

Query: 122 HYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFA 181
            YE+ VMPFGL NAP+TF   M   F+    R V V+ DDIL+++    EH KHL  V  
Sbjct: 712 KYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLE 771

Query: 182 MLRDNRLYANHKKCVFAHSRIQYLGHQI 210
            L++  L    KKC FA    ++LG+ I
Sbjct: 772 RLKNENLIVKKKKCKFASEETEFLGYSI 797

[Close]

BLAST of Cmc08g0227261 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 3.5e-46
Identity = 96/208 (46.15%), Postives = 128/208 (61.54%), Query Frame = 0


Query: 2   PNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCVD 61
           P  R   ++PY      ++EI  +V ++L +  I PS+SP SSPV+LV KKDG +R CVD
Sbjct: 618 PGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVD 677

Query: 62  YRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHEG 121
           YR LN+AT+SD F +P I+ LL  +  A +F+ LDL SGYHQI M+ +D  KT F T  G
Sbjct: 678 YRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSG 737

Query: 122 HYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVFA 181
            YE+ VMPFGL NAP+TF   M   F+    R V V+ DDIL+++    EH KHL  V  
Sbjct: 738 KYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLE 797

Query: 182 MLRDNRLYANHKKCVFAHSRIQYLGHQI 210
            L++  L    KKC FA    ++LG+ I
Sbjct: 798 RLKNENLIVKKKKCKFASEETEFLGYSI 823

[Close]

BLAST of Cmc08g0227261 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.5e-44
Identity = 91/217 (41.94%), Postives = 132/217 (60.83%), Query Frame = 0


Query: 4   QRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKK-----DGGWRF 63
           Q PI  + Y Y    + E+E  + E+LQDGIIRPS SPY+SP+ +V KK     +  +R 
Sbjct: 121 QDPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRM 180

Query: 64  CVDYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRT 123
            VD+++LN  T+ D + IP I   L  L  A  F+ LDL SG+HQI MKE DI KT F T
Sbjct: 181 VVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFST 240

Query: 124 HEGHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGM 183
             G YEFL +PFGL NAPA FQ +++ + +  + +   V+ DDI+V++ D   H K+L +
Sbjct: 241 LNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRL 300

Query: 184 VFAMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVK 216
           V A L    L  N +K  F  +++++LG+ ++  G+K
Sbjct: 301 VLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIK 337

[Close]

BLAST of Cmc08g0227261 vs. ExPASy TrEMBL
Match: A0A5A7TIE4 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001300 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 8.7e-125
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV
Sbjct: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE
Sbjct: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVY+SDITEHEKHLGMVF
Sbjct: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVF 180

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIKLEV 224
           AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIKLEV
Sbjct: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVKRMMIKLEV 223

[Close]

BLAST of Cmc08g0227261 vs. ExPASy TrEMBL
Match: A0A5D3E0Q7 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00130 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.0e-114
Identity = 202/215 (93.95%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           +PNQRPINVRPYKYGHVQK EIENLV EMLQDGIIRPSRSPYSS VLLVKKKDGGWRFCV
Sbjct: 347 LPNQRPINVRPYKYGHVQKGEIENLVAEMLQDGIIRPSRSPYSSLVLLVKKKDGGWRFCV 406

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DYRKLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKT FRTHE
Sbjct: 407 DYRKLNQATVSDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHE 466

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDILVY+SD+TEHEKHLGM+F
Sbjct: 467 GHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDLTEHEKHLGMIF 526

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVK 216
           A+LRDN+LYANHKKCVFAHSRIQYLGHQISKAGV+
Sbjct: 527 AVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVE 561

[Close]

BLAST of Cmc08g0227261 vs. ExPASy TrEMBL
Match: A0A5D3CUL0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1275G00160 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.0e-114
Identity = 202/215 (93.95%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           +PNQRPINVRPYKYGHVQK EIENLV EMLQDGIIRPSRSPYSS VLLVKKKDGGWRFCV
Sbjct: 347 LPNQRPINVRPYKYGHVQKGEIENLVAEMLQDGIIRPSRSPYSSLVLLVKKKDGGWRFCV 406

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DYRKLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKT FRTHE
Sbjct: 407 DYRKLNQATVSDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHE 466

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDILVY+SD+TEHEKHLGM+F
Sbjct: 467 GHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDLTEHEKHLGMIF 526

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVK 216
           A+LRDN+LYANHKKCVFAHSRIQYLGHQISKAGV+
Sbjct: 527 AVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVE 561

[Close]

BLAST of Cmc08g0227261 vs. ExPASy TrEMBL
Match: A0A5D3DZZ7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3695G00060 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.3e-112
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           MPNQRPINVRPYKYGHVQK EIE LV EMLQDGIIRPSRSPYSSPVLLVKKKDGGW FCV
Sbjct: 525 MPNQRPINVRPYKYGHVQKGEIEKLVTEMLQDGIIRPSRSPYSSPVLLVKKKDGGWWFCV 584

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DYRKLNQATVSDKF IP+IEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKT FRTHE
Sbjct: 585 DYRKLNQATVSDKFPIPIIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHE 644

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAP TFQSLMN+VFKPFLRRCVLVFFDDILVY+SDITEHEKHLGMVF
Sbjct: 645 GHYEFLVMPFGLTNAPTTFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVF 704

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVK 216
             LRDN+LYANHKKCVFAHS+IQYLGHQISKAGV+
Sbjct: 705 VELRDNQLYANHKKCVFAHSKIQYLGHQISKAGVE 739

[Close]

BLAST of Cmc08g0227261 vs. ExPASy TrEMBL
Match: A0A5A7T8C0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00570 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 199/215 (92.56%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 1   MPNQRPINVRPYKYGHVQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 60
           +PNQ+PINVRPYKYGH+QK EIE LV EMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV
Sbjct: 592 LPNQKPINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSSPVLLVKKKDGGWRFCV 651

Query: 61  DYRKLNQATVSDKFLIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTTFRTHE 120
           DY KLNQATVSDKF IPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKT FRTHE
Sbjct: 652 DYWKLNQATVSDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHE 711

Query: 121 GHYEFLVMPFGLTNAPATFQSLMNKVFKPFLRRCVLVFFDDILVYNSDITEHEKHLGMVF 180
           GHYEFLVMPFGLTNAPATFQSLMN+VFKPFLRRCVLVFFDDIL Y+SDITEH+KHLGMVF
Sbjct: 712 GHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILAYSSDITEHKKHLGMVF 771

Query: 181 AMLRDNRLYANHKKCVFAHSRIQYLGHQISKAGVK 216
           A+LRDN LYANHKKCVFAHSRIQYLGHQISKAGV+
Sbjct: 772 AVLRDNHLYANHKKCVFAHSRIQYLGHQISKAGVE 806

[Close]

BLAST of Cmc08g0227261 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-07
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 17 VQKEEIENLVIEMLQDGIIRPSRSPYSSPVLLVKKKDGGW 57
          +++  ++N + EML+  II+PS SPYSSPVLLV+KKDGGW
Sbjct: 40 LRRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Cmc08g0227261 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041185.1	1.8e-124	99.55	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK14624.1	8.3e-114	93.95	uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa]	[more]
TYK29308.1	8.3e-114	93.95	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK28905.1	2.7e-112	93.02	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0039128.1	3.5e-112	92.56	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26985.1 Ty3/gyp...	[more]

BLAST of Cmc08g0227261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.7e-48	42.79	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.0e-46	42.59	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q99315	3.5e-46	46.15	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.5e-46	46.15	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	5.5e-44	41.94	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc08g0227261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIE4	8.7e-125	99.55	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3E0Q7	4.0e-114	93.95	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3CUL0	4.0e-114	93.95	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DZZ7	1.3e-112	93.02	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T8C0	1.7e-112	92.56	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc08g0227261 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	1.9e-07	60.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..134 e-value: 5.0E-87 score: 292.7
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 1..160
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..160
None	No IPR available	CDD	cd01647	RT_LTR	coord: 33..207 e-value: 5.39743E-94 score: 270.621
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 74..209 e-value: 5.0E-87 score: 292.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 49..209 e-value: 1.2E-31 score: 110.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 30..209 score: 15.865776
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227261.1	Cmc08g0227261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding