Cmc08g0226931 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0226931
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase domain-containing protein
Location	CMiso1.1chr08: 19490581 .. 19492046 (-)
RNA-Seq Expression	Cmc08g0226931
Synteny	Cmc08g0226931

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTGGTTTTTCTTGTATTTCAGAGTGTATCGGTGGACTTAGAATTTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTACTACAACTTTCATGAAGAAATTGTAAACCAAAAACGACTAAAAATTGGTTAAATGGTAGGAACAAGTTAAAGAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTGTTTTGAGGGTTATATGTGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGGTAAGTTTTAGAGGATCTCAAAATGCAGAGTTTGATATAAAGAACACTCATTTTGGTTAAGTATTGAGAAAGTTATAGTTCTTTGAAGTTTATGTTAGAAATCTGGAAATTTTAGAGAATTGTTGAAATAGGATTTTATTTCTTAAGCTTTGTTTTTGAGCGTCATCTTTGGTGCGACATGTTATGTATATCTTTAGGAAACCAGAATGTTTAAGGTTTTAATACTCGGTTGGGTTGTTGGCAGGCCGAGAAGAATTAAACCGAGCTTATAGACCAAGGATCTAGCCCAAGACTGTGAGTGATAAAACCAACTTTGAAATATTTTCCATAATTGTTATTATGATTGAATGCGATAAATGTTTATTTACGAAGCCATGAAAGGTATTTGAATTTCATGACTATTTTCAAGTATACATTTGGAGACTAGATTTCTTAAAGAAATTTATGCTAGCACGTAGATATTAAATGTTTGGAAAGTATTTAAACCACAATATTTTAAGCAAAGCATGAATTAGTATGAAGTTTTGTTTTAAGAACTACAATTTTCCACGAAAGAGCTGAGTAAAGTTCGAGCTTTGTGTAAAATTTATAAGCAGGCATGTTTTAATATTTTATGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTTAGATTTCGTTGTTGACGTTGAGTGTACTCCGTAACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGTGCTTGTAAACGTTGTTGTACTAGGTGTACCCTACACAACGTAGATTCGTCATGTTAGTTAAAATGCTTCGATATACTTGATATGCCTTGCTAGATTTGAATGATGAACATGCTGAGTATTTAAGGAAGCTATTCTTACTATTACACATTTACATTTACGACTTGTGTAAACAGATTTATATGTGTAAAGTTTTCACGTGCTCTTATCTTTAAATTCATAGTTTTAAACTGAGTCACTCACTGAGCTCCATAGCTCACCCTTTCCAAAATGTTTTACCCATTTTCCAGGTAGAGATCGACTTCCCGGTGCCTGATAGACTGCCTTAGTCTGCGGAAGCTTCATTATCGATTGCCAGTACGTGTTTTGAGTTG

mRNA sequence

ATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTGGTTTTTCTTGTATTTCAGAGTGTATCGGTGGACTTAGAATTTCTATTTGGCCGAGAAGAATTAAACCGAGCTTATAGACCAAGGATCTAGCCCAAGACTGTAGAGATCGACTTCCCGGTGCCTGATAGACTGCCTTAGTCTGCGGAAGCTTCATTATCGATTGCCAGTACGTGTTTTGAGTTG

Coding sequence (CDS)

ATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTGGTTTTTCTTGTATTTCAGAGTGTATCGGTGGACTTAGAATTTCTATTTGGCCGAGAAGAATTAAACCGAGCTTATAG

Protein sequence

MKKTGQLVFTRNQEVSGFSCISECIGGLRISIWPRRIKPSL

Homology

[Close]

BLAST of Cmc08g0226931 vs. NCBI nr
Match: KAA0056684.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1   MKKTGQLVFTRNQEVSGFSCISECIGGLRISIW 34
           MKKTGQLVFTRNQEVSGFSCISECIGG+RISIW
Sbjct: 104 MKKTGQLVFTRNQEVSGFSCISECIGGVRISIW 136

[Close]

BLAST of Cmc08g0226931 vs. NCBI nr
Match: KAA0042134.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MKKTGQLVFTRNQEVSGFSCISECIGGLRISIWPR 36
          MKKTGQLVFTRNQEVSG SCISECIGG+RISIW +
Sbjct: 1  MKKTGQLVFTRNQEVSGSSCISECIGGVRISIWDK 35

[Close]

BLAST of Cmc08g0226931 vs. NCBI nr
Match: KAA0043123.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 1   MKKTGQLVFTRNQEVSGFSCISECIGGLRISIW 34
           ++  GQLVFTRNQEVSGFSCISECIGG+RISIW
Sbjct: 613 LQTAGQLVFTRNQEVSGFSCISECIGGVRISIW 645

[Close]

BLAST of Cmc08g0226931 vs. NCBI nr
Match: KAA0032946.1 (uncharacterized protein E6C27_scaffold269G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 3   KTGQLVFTRNQEVSGFSCISECIGGLRISIW 34
           KTGQLVFTRNQEVSGF+CISECI G+RISIW
Sbjct: 235 KTGQLVFTRNQEVSGFACISECISGVRISIW 265

[Close]

BLAST of Cmc08g0226931 vs. NCBI nr
Match: KAA0035073.1 (uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 6  QLVFTRNQEVSGFSCISECIGGLRISIW 34
          QLVFTRNQEVSGFSCISECIGG+RISIW
Sbjct: 67 QLVFTRNQEVSGFSCISECIGGVRISIW 94

[Close]

BLAST of Cmc08g0226931 vs. ExPASy TrEMBL
Match: A0A5A7UNA3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00100 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1   MKKTGQLVFTRNQEVSGFSCISECIGGLRISIW 34
           MKKTGQLVFTRNQEVSGFSCISECIGG+RISIW
Sbjct: 104 MKKTGQLVFTRNQEVSGFSCISECIGGVRISIW 136

[Close]

BLAST of Cmc08g0226931 vs. ExPASy TrEMBL
Match: A0A5A7TFC5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006220 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-09
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MKKTGQLVFTRNQEVSGFSCISECIGGLRISIWPR 36
          MKKTGQLVFTRNQEVSG SCISECIGG+RISIW +
Sbjct: 1  MKKTGQLVFTRNQEVSGSSCISECIGGVRISIWDK 35

[Close]

BLAST of Cmc08g0226931 vs. ExPASy TrEMBL
Match: A0A5A7TIE3 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold332G00080 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-08
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 1   MKKTGQLVFTRNQEVSGFSCISECIGGLRISIW 34
           ++  GQLVFTRNQEVSGFSCISECIGG+RISIW
Sbjct: 613 LQTAGQLVFTRNQEVSGFSCISECIGGVRISIW 645

[Close]

BLAST of Cmc08g0226931 vs. ExPASy TrEMBL
Match: A0A5A7SSI1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00200 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-08
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 3   KTGQLVFTRNQEVSGFSCISECIGGLRISIW 34
           KTGQLVFTRNQEVSGF+CISECI G+RISIW
Sbjct: 235 KTGQLVFTRNQEVSGFACISECISGVRISIW 265

[Close]

BLAST of Cmc08g0226931 vs. ExPASy TrEMBL
Match: A0A5A7SX02 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001380 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-07
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 6  QLVFTRNQEVSGFSCISECIGGLRISIW 34
          QLVFTRNQEVSGFSCISECIGG+RISIW
Sbjct: 67 QLVFTRNQEVSGFSCISECIGGVRISIW 94

The following BLAST results are available for this feature:

BLAST of Cmc08g0226931 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056684.1	1.0e-09	96.97	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0042134.1	5.1e-09	88.57	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0043123.1	1.2e-07	84.85	transposase [Cucumis melo var. makuwa]	[more]
KAA0032946.1	1.6e-07	90.32	uncharacterized protein E6C27_scaffold269G00200 [Cucumis melo var. makuwa]	[more]
KAA0035073.1	1.1e-06	96.43	uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0226931 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0226931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNA3	4.9e-10	96.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73...	[more]
A0A5A7TFC5	2.5e-09	88.57	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7TIE3	6.0e-08	84.85	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold332G00080 PE...	[more]
A0A5A7SSI1	7.9e-08	90.32	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7SX02	5.1e-07	96.43	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of Cmc08g0226931 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0226931.1	Cmc08g0226931.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding