Cmc08g0226871 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0226871
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA/RNA polymerases superfamily protein
Location	CMiso1.1chr08: 19356760 .. 19357107 (+)
RNA-Seq Expression	Cmc08g0226871
Synteny	Cmc08g0226871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTCATGAACAGGATCTTCCATCAATATTTAGATCAGTTTGTGATCGTATTCATTGATGATATATTAGTTTACTCGGTTAACAAAGAAGCCCATGAGAAATATCTGAGGCTTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTCTTGGGACATGTAGTTTCAGAAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTCAATTGGGAAAGACTAACTAGTGCCACAGAAGTACATAGTTTCCTGGGTTTGGTAGGATACTATATGCGTTTTATTGAAGATTTCTCATGA

mRNA sequence

ATGGATCTCATGAACAGGATCTTCCATCAATATTTAGATCAGTTTGTGATCGTATTCATTGATGATATATTAGTTTACTCGGTTAACAAAGAAGCCCATGAGAAATATCTGAGGCTTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTCTTGGGACATGTAGTTTCAGAAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTCAATTGGGAAAGACTAACTAGTGCCACAGAAGTACATAGTTTCCTGGGTTTGGTAGGATACTATATGCGTTTTATTGAAGATTTCTCATGA

Coding sequence (CDS)

ATGGATCTCATGAACAGGATCTTCCATCAATATTTAGATCAGTTTGTGATCGTATTCATTGATGATATATTAGTTTACTCGGTTAACAAAGAAGCCCATGAGAAATATCTGAGGCTTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTCTTGGGACATGTAGTTTCAGAAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTCAATTGGGAAAGACTAACTAGTGCCACAGAAGTACATAGTTTCCTGGGTTTGGTAGGATACTATATGCGTTTTATTGAAGATTTCTCATGA

Protein sequence

MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS

Homology

[Close]

BLAST of Cmc08g0226871 vs. NCBI nr
Match: KAA0038417.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.2e-51
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 756 MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 815

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 816 EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFS 870

[Close]

BLAST of Cmc08g0226871 vs. NCBI nr
Match: TYJ96975.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.2e-51
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 544 MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 603

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 604 EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFS 658

[Close]

BLAST of Cmc08g0226871 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.2e-51
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 674 MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 733

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 734 EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFS 788

[Close]

BLAST of Cmc08g0226871 vs. NCBI nr
Match: KAA0061419.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 13  MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 72

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 73  EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYRRFIEDFS 127

[Close]

BLAST of Cmc08g0226871 vs. NCBI nr
Match: TYK28679.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 465 MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 524

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 525 EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYRRFIEDFS 579

[Close]

BLAST of Cmc08g0226871 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-17
Identity = 42/112 (37.50%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 4   MNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWLEQV 63
           MN I    L++  +V++DDI+V+S + + H + L LV + L    L  +  KCEF  ++ 
Sbjct: 349 MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQET 408

Query: 64  VFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
            FLGHV++  G+  +P+K+EA+  +   T   E+ +FLGL GYY +FI +F+
Sbjct: 409 TFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

[Close]

BLAST of Cmc08g0226871 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.6e-17
Identity = 41/112 (36.61%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 4   MNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWLEQV 63
           MN I    L++  +V++DDI+++S +   H   ++LV   L D  L  +  KCEF  ++ 
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEA 407

Query: 64  VFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
            FLGH+V+  G+  +P KV+A+V++   T   E+ +FLGL GYY +FI +++
Sbjct: 408 NFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYA 459

[Close]

BLAST of Cmc08g0226871 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.5e-16
Identity = 42/113 (37.17%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 3   LMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWLEQ 62
           +++ I  +++ +   V+IDDI+V+S + + H K LRLVL +L    L     K  F   Q
Sbjct: 264 MIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQ 323

Query: 63  VVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           V FLG++V+  G+  DP+KV A+      TS  E+  FLG+  YY +FI+D++
Sbjct: 324 VEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYA 376

[Close]

BLAST of Cmc08g0226871 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 36  YLRLVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSEKGVSVDPQKVEAVVNWERLTS 95
           +L +VLQ     Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W    +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 96  ATEVHSFLGLVGYYMRFIEDF 115
            TE+  FLGL GYY RF++++
Sbjct: 63  TTELRGFLGLTGYYRRFVKNY 83

[Close]

BLAST of Cmc08g0226871 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 37/108 (34.26%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 4   MNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWLEQV 63
           +N I  +  +  V+ ++DDIL++S ++  H K+++ VLQ L++  L    +KCEF   QV
Sbjct: 549 INTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQV 608

Query: 64  VFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFI 112
            F+G+ +SEKG +   + ++ V+ W++  +  E+  FLG V Y  +FI
Sbjct: 609 KFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656

[Close]

BLAST of Cmc08g0226871 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 674 MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 733

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 734 EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFS 788

[Close]

BLAST of Cmc08g0226871 vs. ExPASy TrEMBL
Match: A0A5A7TA17 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003160 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 756 MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 815

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 816 EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFS 870

[Close]

BLAST of Cmc08g0226871 vs. ExPASy TrEMBL
Match: A0A5D3BEU1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00190 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 544 MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 603

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 604 EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFS 658

[Close]

BLAST of Cmc08g0226871 vs. ExPASy TrEMBL
Match: A0A5D3DZ50 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00500 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.6e-51
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 465 MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 524

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 525 EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYRRFIEDFS 579

[Close]

BLAST of Cmc08g0226871 vs. ExPASy TrEMBL
Match: A0A5A7V6X5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G001180 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.6e-51
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MDLMNRIFHQYLDQFVIVFIDDILVYSVNKEAHEKYLRLVLQTLRDKQLYAKFSKCEFWL 60
           MDLMNRIFHQYLDQFVIVFIDDILVYSV++E+HE++LR+VLQTLRDKQLYAKFSKCEFWL
Sbjct: 13  MDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQLYAKFSKCEFWL 72

Query: 61  EQVVFLGHVVSEKGVSVDPQKVEAVVNWERLTSATEVHSFLGLVGYYMRFIEDFS 116
           EQVVFLGHVVS KGVSVDPQKVEAVVNWER TSATEV SFLGL GYY RFIEDFS
Sbjct: 73  EQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYRRFIEDFS 127

[Close]

BLAST of Cmc08g0226871 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 36  YLRLVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSEKGVSVDPQKVEAVVNWERLTS 95
           +L +VLQ     Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W    +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 96  ATEVHSFLGLVGYYMRFIEDF 115
            TE+  FLGL GYY RF++++
Sbjct: 63  TTELRGFLGLTGYYRRFVKNY 83

The following BLAST results are available for this feature:

BLAST of Cmc08g0226871 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038417.1	5.2e-51	90.43	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ96975.1	5.2e-51	90.43	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0053222.1	5.2e-51	90.43	hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]	[more]
KAA0061419.1	1.1e-50	90.43	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK28679.1	1.1e-50	90.43	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0226871 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	3.0e-17	37.50	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	8.6e-17	36.61	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	9.5e-16	37.17	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P92523	1.5e-13	44.44	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0CT41	2.0e-13	34.26	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc08g0226871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBV9	2.5e-51	90.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TA17	2.5e-51	90.43	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BEU1	2.5e-51	90.43	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DZ50	5.6e-51	90.43	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V6X5	5.6e-51	90.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74...	[more]

BLAST of Cmc08g0226871 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.1e-14	44.44	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 80..115 e-value: 4.4E-10 score: 41.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..76 e-value: 6.5E-25 score: 89.6
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 4..69 e-value: 1.3E-10 score: 41.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..70 score: 9.695578
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 10..115
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 10..115
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..70 e-value: 4.87449E-27 score: 96.1253
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0226871.1	Cmc08g0226871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding