Cmc08g0226861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0226861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 19356404 .. 19356751 (+)
RNA-Seq Expression	Cmc08g0226861
Synteny	Cmc08g0226861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAGCAAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAGTGCTATTTATGAAAAAGAAAGATGGTACCCTCAAATTATGTATTGACTGTAGACAGTTAAACAAGGTTATAATACGTGACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACGAAGGGGAGCAGCATTGTTTTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTCAGAACGAGGTATGGGCATTATGAGTTTCGAATGTGCTAG

mRNA sequence

ATGGCTCCAAGCAAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAGTGCTATTTATGAAAAAGAAAGATGGTACCCTCAAATTATGTATTGACTGTAGACAGTTAAACAAGGTTATAATACGTGACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACGAAGGGGAGCAGCATTGTTTTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTCAGAACGAGGTATGGGCATTATGAGTTTCGAATGTGCTAG

Coding sequence (CDS)

ATGGCTCCAAGCAAGCTTAAAGAATTGAAGATGCAGTTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAGTGCTATTTATGAAAAAGAAAGATGGTACCCTCAAATTATGTATTGACTGTAGACAGTTAAACAAGGTTATAATACGTGACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACGAAGGGGAGCAGCATTGTTTTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTCAGAACGAGGTATGGGCATTATGAGTTTCGAATGTGCTAG

Protein sequence

MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRMC

Homology

[Close]

BLAST of Cmc08g0226861 vs. NCBI nr
Match: TYK21915.1 (putative 22 kDa kafirin cluster [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           M PSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCI  RQLNKV IRDK
Sbjct: 244 MTPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIGYRQLNKVTIRDK 303

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM 115
           YPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFR+
Sbjct: 304 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRV 357

[Close]

BLAST of Cmc08g0226861 vs. NCBI nr
Match: KAA0026295.1 (putative Gag-pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 6.5e-54
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+K
Sbjct: 627 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 686

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM 115
           YPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFR+
Sbjct: 687 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRV 740

[Close]

BLAST of Cmc08g0226861 vs. NCBI nr
Match: KAA0041120.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK
Sbjct: 232 MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 291

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGH 110
           YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR  H
Sbjct: 292 YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRIFH 340

[Close]

BLAST of Cmc08g0226861 vs. NCBI nr
Match: TYK27290.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+K
Sbjct: 594 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 653

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM 115
           YPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAKT FRTRYGHYEFR+
Sbjct: 654 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 707

[Close]

BLAST of Cmc08g0226861 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+K
Sbjct: 665 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM 115
           YPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAKT FRTRYGHYEFR+
Sbjct: 725 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 778

[Close]

BLAST of Cmc08g0226861 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-22
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 7   KELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRI 66
           +E+   +Q+L+D  +I PS SP  +PV+ + KKDGT +LC+D R LNK  I D +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEF 113
           D+L  +   A +F+ +DL SGYHQ+ +   D  KT F T  G YE+
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 715

[Close]

BLAST of Cmc08g0226861 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-22
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 7   KELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDKYPLPRI 66
           +E+   +Q+L+D  +I PS SP  +PV+ + KKDGT +LC+D R LNK  I D +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEF 113
           D+L  +   A +F+ +DL SGYHQ+ +   D  KT F T  G YE+
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 741

[Close]

BLAST of Cmc08g0226861 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.1e-19
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 4   SKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDG------TLKLCIDCRQLNKVII 63
           S+++E++ Q+Q+L+    + PSVS + +P+L + KK          +L ID RQ+NK ++
Sbjct: 325 SQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLL 384

Query: 64  RDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEF 113
            DK+PLPRIDD+ DQ   A  FS +DL SG+HQ+++ E     T+F T  G Y F
Sbjct: 385 ADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRF 439

[Close]

BLAST of Cmc08g0226861 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-17
Identity = 41/110 (37.27%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 8   ELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKD-----GTLKLCIDCRQLNKVIIRDKYP 67
           E++ Q+QE++++G IR S SP+ +P   + KK         ++ ID R+LN++ I D+YP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEF 113
           +P +D++  +      F+ IDL  G+HQ+++ E  I+KT F T+ GHYE+
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEY 330

[Close]

BLAST of Cmc08g0226861 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-17
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 42  TLKLCIDCRQLNKVIIRDKYPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKT 101
           +L++CID R L KV I++KYP+PR+DDLFD+   A  F+K+DLRSGY Q+++ + D  KT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 TFRTRYGHYEFRM 115
           T  TRYG +EFR+
Sbjct: 65  TCVTRYGSFEFRV 77

[Close]

BLAST of Cmc08g0226861 vs. ExPASy TrEMBL
Match: A0A5D3DEE2 (Putative 22 kDa kafirin cluster OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00560 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.3e-55
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           M PSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCI  RQLNKV IRDK
Sbjct: 244 MTPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIGYRQLNKVTIRDK 303

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM 115
           YPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFR+
Sbjct: 304 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRV 357

[Close]

BLAST of Cmc08g0226861 vs. ExPASy TrEMBL
Match: A0A5A7SPH3 (Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003020 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.2e-54
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+K
Sbjct: 627 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 686

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM 115
           YPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFR+
Sbjct: 687 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRV 740

[Close]

BLAST of Cmc08g0226861 vs. ExPASy TrEMBL
Match: A0A5A7TCW4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00280 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.4e-54
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK
Sbjct: 232 MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 291

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGH 110
           YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR  H
Sbjct: 292 YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRIFH 340

[Close]

BLAST of Cmc08g0226861 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+K
Sbjct: 627 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 686

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM 115
           YPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAKT FRTRYGHYEFR+
Sbjct: 687 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 740

[Close]

BLAST of Cmc08g0226861 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 105/114 (92.11%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAPSKLKELKMQLQELVDKGYIRPSVSPWGAPVLFMKKKDGTLKLCIDCRQLNKVIIRDK 60
           MAPS+LKELKMQLQELVDKGYIRPSVSPWGAPVLF+KKKDGTL+LCID RQLNKV IR+K
Sbjct: 665 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61  YPLPRIDDLFDQRRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRM 115
           YPLPRIDDLFDQ RGAALFSKIDLRSGYHQLKVRESDIAKT FRTRYGHYEFR+
Sbjct: 725 YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRV 778

The following BLAST results are available for this feature:

BLAST of Cmc08g0226861 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21915.1	1.7e-54	94.74	putative 22 kDa kafirin cluster [Cucumis melo var. makuwa]	[more]
KAA0026295.1	6.5e-54	92.98	putative Gag-pol protein [Cucumis melo var. makuwa]	[more]
KAA0041120.1	1.1e-53	98.17	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK27290.1	2.5e-53	92.11	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	2.5e-53	92.11	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]

BLAST of Cmc08g0226861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.1e-22	46.23	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.1e-22	46.23	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	7.1e-19	40.87	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
P20825	1.0e-17	37.27	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P31843	1.0e-17	54.79	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]

BLAST of Cmc08g0226861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DEE2	8.3e-55	94.74	Putative 22 kDa kafirin cluster OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SPH3	3.2e-54	92.98	Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7TCW4	5.4e-54	98.17	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7U2V7	1.2e-53	92.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	1.2e-53	92.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]

BLAST of Cmc08g0226861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..114 e-value: 2.7E-46 score: 159.5
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 12..112
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 12..112
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..115 e-value: 3.32631E-45 score: 142.349
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..88 e-value: 2.7E-46 score: 159.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0226861.1	Cmc08g0226861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding