Cmc08g0226821 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0226821
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 19269470 .. 19270147 (+)
RNA-Seq Expression	Cmc08g0226821
Synteny	Cmc08g0226821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCATTAAAAATCTGGAGACACTATTTGTTCGGGGAAAAGTGCCATATTTTCACAGATCATAAAAGTTTGAAGTATATTTTTTATCAAAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCATCCAGGTAAGGCCAACGTAGTAGCAAATGCATTAAGTAGGAAGTCAAGACTTCCGAAGAGTGCCTTGTGTGGTATTCAAGTAGCTTTGTTGAATGAGTTAAAAGGATCCAAGGCAGTAGTAACTACAGAGGATTCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTGAGATTGTAAGAAGACAGTCAGAAGACAGTAATTTACAGAAGAAGTTTGAGAAATCCAAGAAAGGCTTAGAGGTGGAGTTTGAGCTGAGAACAGATGGAGCCATTGTTAAACAAGGAAGATTATGTGTTCCGAATATCAGTGAGCTTAAGAATGCTATTCTAGAAGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGGTAGCACCAAGATGTACAGAACTTTAAAGAAGACTTATTGA

mRNA sequence

ATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCATTAAAAATCTGGAGACACTATTTGTTCGGGGAAAAGTGCCATATTTTCACAGATCATAAAAGTTTGAAGTATATTTTTTATCAAAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCATCCAGGTAAGGCCAACGTAGTAGCAAATGCATTAAGTAGGAAGTCAAGACTTCCGAAGAGTGCCTTGTGTGGTATTCAAGTAGCTTTGTTGAATGAGTTAAAAGGATCCAAGGCAGTAGTAACTACAGAGGATTCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTGAGATTGTAAGAAGACAGTCAGAAGACAGTAATTTACAGAAGAAGTTTGAGAAATCCAAGAAAGGCTTAGAGGTGGAGTTTGAGCTGAGAACAGATGGAGCCATTGTTAAACAAGGAAGATTATGTGTTCCGAATATCAGTGAGCTTAAGAATGCTATTCTAGAAGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGGTAGCACCAAGATGTACAGAACTTTAAAGAAGACTTATTGA

Coding sequence (CDS)

ATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCATTAAAAATCTGGAGACACTATTTGTTCGGGGAAAAGTGCCATATTTTCACAGATCATAAAAGTTTGAAGTATATTTTTTATCAAAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCATCCAGGTAAGGCCAACGTAGTAGCAAATGCATTAAGTAGGAAGTCAAGACTTCCGAAGAGTGCCTTGTGTGGTATTCAAGTAGCTTTGTTGAATGAGTTAAAAGGATCCAAGGCAGTAGTAACTACAGAGGATTCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTGAGATTGTAAGAAGACAGTCAGAAGACAGTAATTTACAGAAGAAGTTTGAGAAATCCAAGAAAGGCTTAGAGGTGGAGTTTGAGCTGAGAACAGATGGAGCCATTGTTAAACAAGGAAGATTATGTGTTCCGAATATCAGTGAGCTTAAGAATGCTATTCTAGAAGAAGCTCACAGTTCAGCTTACGCTATGCATCCAGGTAGCACCAAGATGTACAGAACTTTAAAGAAGACTTATTGA

Protein sequence

MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFYQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELKGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY

Homology

[Close]

BLAST of Cmc08g0226821 vs. NCBI nr
Match: KAA0041109.1 (hypothetical protein E6C27_scaffold128G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 448.7 bits (1153), Expect = 2.9e-122
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1    MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
            MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 804  MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 863

Query: 61   YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
            YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK
Sbjct: 864  YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 923

Query: 121  GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
            GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 924  GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 983

Query: 181  IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
            IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 984  IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 1028

[Close]

BLAST of Cmc08g0226821 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.0e-119
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1   MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
           MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 523 MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 582

Query: 61  YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
            QKELNLRQRRWLELIKDYDCTIEYHPGKANVVA+ALSRKSRLPKSALCGI+VALLNEL+
Sbjct: 583 DQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELR 642

Query: 121 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
           GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 643 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 702

Query: 181 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
           IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 703 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 747

[Close]

BLAST of Cmc08g0226821 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.0e-119
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1   MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
           MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 630 MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 689

Query: 61  YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
            QKELNLRQRRWLELIKDYDCTIEYHPGKANVVA+ALSRKSRLPKSALCGI+VALLNEL+
Sbjct: 690 DQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELR 749

Query: 121 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
           GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 750 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 809

Query: 181 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
           IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 810 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 854

[Close]

BLAST of Cmc08g0226821 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.0e-119
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1    MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
            MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 969  MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 1028

Query: 61   YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
             QKELNLRQRRWLELIKDYDCTIEYHPGKANVVA+ALSRKSRLPKSALCGI+VALLNEL+
Sbjct: 1029 DQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELR 1088

Query: 121  GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
            GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 1089 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 1148

Query: 181  IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
            IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 1149 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 1193

[Close]

BLAST of Cmc08g0226821 vs. NCBI nr
Match: KAA0042295.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.3 bits (1131), Expect = 1.0e-119
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1    MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
            MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 921  MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 980

Query: 61   YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
             QKELNLRQRRWLELIKDYDCTIEYHPGKANVVA+ALSRKSRLPKSALCGI+VALLNEL+
Sbjct: 981  DQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELR 1040

Query: 121  GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
            GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 1041 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 1100

Query: 181  IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
            IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 1101 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 1145

[Close]

BLAST of Cmc08g0226821 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-17
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 2   QDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFY 61
           QDG+ ++Y SR L EHE NY T + EL A+V A K +RHYL G    I +DH+ L +++ 
Sbjct: 526 QDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYR 585

Query: 62  QKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSR 100
            K+ N +  RW   + ++D  I+Y  GK N VA+ALSR
Sbjct: 586 MKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc08g0226821 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 55/215 (25.58%), Postives = 98/215 (45.58%), Query Frame = 0


Query: 7   IAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFG--EKCHIFTDHKSL--KYIFYQ 66
           + Y S ++ + + NY   D E+ A++ +LK WRHYL    E   I TDH++L  +     
Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67  KELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSR----KSRLPKSALCGIQVALLNE 126
           +  N R  RW   ++D++  I Y PG AN +A+ALSR       +PK             
Sbjct: 795 EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD------------ 854

Query: 127 LKGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTD 186
                   + ++S + + Q  +      ++V   + D+ L        K +E   +L+  
Sbjct: 855 --------SEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDG 914

Query: 187 GAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPG 214
             I  + ++ +PN ++L   I+++ H     +HPG
Sbjct: 915 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Cmc08g0226821 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 55/215 (25.58%), Postives = 98/215 (45.58%), Query Frame = 0


Query: 7   IAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFG--EKCHIFTDHKSL--KYIFYQ 66
           + Y S ++ + + NY   D E+ A++ +LK WRHYL    E   I TDH++L  +     
Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67  KELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSR----KSRLPKSALCGIQVALLNE 126
           +  N R  RW   ++D++  I Y PG AN +A+ALSR       +PK             
Sbjct: 795 EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD------------ 854

Query: 127 LKGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTD 186
                   + ++S + + Q  +      ++V   + D+ L        K +E   +L+  
Sbjct: 855 --------SEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDG 914

Query: 187 GAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPG 214
             I  + ++ +PN ++L   I+++ H     +HPG
Sbjct: 915 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Cmc08g0226821 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 55/215 (25.58%), Postives = 98/215 (45.58%), Query Frame = 0


Query: 7   IAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFG--EKCHIFTDHKSL--KYIFYQ 66
           + Y S ++ + + NY   D E+ A++ +LK WRHYL    E   I TDH++L  +     
Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67  KELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSR----KSRLPKSALCGIQVALLNE 126
           +  N R  RW   ++D++  I Y PG AN +A+ALSR       +PK             
Sbjct: 795 EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD------------ 854

Query: 127 LKGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTD 186
                   + ++S + + Q  +      ++V   + D+ L        K +E   +L+  
Sbjct: 855 --------SEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDG 914

Query: 187 GAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPG 214
             I  + ++ +PN ++L   I+++ H     +HPG
Sbjct: 915 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Cmc08g0226821 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 55/215 (25.58%), Postives = 98/215 (45.58%), Query Frame = 0


Query: 7   IAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFG--EKCHIFTDHKSL--KYIFYQ 66
           + Y S ++ + + NY   D E+ A++ +LK WRHYL    E   I TDH++L  +     
Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67  KELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSR----KSRLPKSALCGIQVALLNE 126
           +  N R  RW   ++D++  I Y PG AN +A+ALSR       +PK             
Sbjct: 795 EPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKD------------ 854

Query: 127 LKGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTD 186
                   + ++S + + Q  +      ++V   + D+ L        K +E   +L+  
Sbjct: 855 --------SEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDG 914

Query: 187 GAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPG 214
             I  + ++ +PN ++L   I+++ H     +HPG
Sbjct: 915 LLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Cmc08g0226821 vs. ExPASy TrEMBL
Match: A0A5A7TIG0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00120 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.4e-122
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1    MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
            MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 804  MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 863

Query: 61   YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
            YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK
Sbjct: 864  YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 923

Query: 121  GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
            GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 924  GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 983

Query: 181  IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
            IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 984  IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 1028

[Close]

BLAST of Cmc08g0226821 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.0e-120
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1    MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
            MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 931  MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 990

Query: 61   YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
             QKELNLRQRRWLELIKDYDCTIEYHPGKANVVA+ALSRKSRLPKSALCGI+VALLNEL+
Sbjct: 991  DQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELR 1050

Query: 121  GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
            GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 1051 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 1110

Query: 181  IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
            IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 1111 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 1155

[Close]

BLAST of Cmc08g0226821 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.0e-120
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1    MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
            MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 969  MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 1028

Query: 61   YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
             QKELNLRQRRWLELIKDYDCTIEYHPGKANVVA+ALSRKSRLPKSALCGI+VALLNEL+
Sbjct: 1029 DQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELR 1088

Query: 121  GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
            GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 1089 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 1148

Query: 181  IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
            IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 1149 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 1193

[Close]

BLAST of Cmc08g0226821 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.0e-120
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1    MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
            MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 969  MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 1028

Query: 61   YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
             QKELNLRQRRWLELIKDYDCTIEYHPGKANVVA+ALSRKSRLPKSALCGI+VALLNEL+
Sbjct: 1029 DQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELR 1088

Query: 121  GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
            GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 1089 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 1148

Query: 181  IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
            IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 1149 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 1193

[Close]

BLAST of Cmc08g0226821 vs. ExPASy TrEMBL
Match: A0A5A7UUL6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00090 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.0e-120
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1   MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 60
           MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF
Sbjct: 601 MQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIF 660

Query: 61  YQKELNLRQRRWLELIKDYDCTIEYHPGKANVVANALSRKSRLPKSALCGIQVALLNELK 120
            QKELNLRQRRWLELIKDYDCTIEYHPGKANVVA+ALSRKSRLPKSALCGI+VALLNEL+
Sbjct: 661 DQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELR 720

Query: 121 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 180
           GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA
Sbjct: 721 GSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGA 780

Query: 181 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 226
           IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY
Sbjct: 781 IVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTY 825

The following BLAST results are available for this feature:

BLAST of Cmc08g0226821 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041109.1	2.9e-122	100.00	hypothetical protein E6C27_scaffold128G00120 [Cucumis melo var. makuwa]	[more]
KAA0050493.1	1.0e-119	98.22	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050527.1	1.0e-119	98.22	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066849.1	1.0e-119	98.22	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0042295.1	1.0e-119	98.22	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0226821 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.2e-17	44.90	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q9UR07	1.1e-15	25.58	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.1e-15	25.58	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.1e-15	25.58	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.1e-15	25.58	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0226821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIG0	1.4e-122	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12...	[more]
A0A5A7U2V7	5.0e-120	98.22	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BHI1	5.0e-120	98.22	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	5.0e-120	98.22	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]
A0A5A7UUL6	5.0e-120	98.22	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc08g0226821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 5..79 e-value: 1.3E-24 score: 86.5
None	No IPR available	GENE3D	3.10.20.370		coord: 2..50 e-value: 7.5E-6 score: 27.8
None	No IPR available	GENE3D	1.10.340.70		coord: 151..225 e-value: 1.2E-5 score: 27.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..218
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 1..218
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 6..100 e-value: 8.57491E-50 score: 156.499
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0226821.1	Cmc08g0226821.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding