Cmc08g0226811 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0226811
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	NBS-LRR type resistance protein
Location	CMiso1.1chr08: 19246290 .. 19246658 (+)
RNA-Seq Expression	Cmc08g0226811
Synteny	Cmc08g0226811

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAATCATGGACGAACAAGGATGCTAGACAAAAGTAGCCTTACAATTATAGTAGTGGGTCCAAGTCGTTTCTACAACGACGACATGAGCTCATTGAGAAACGAGGTCAGCCAGTTAACCATGTGGAGTTATTTAGAGAAACACACAATCGGAGTGGTCAATTTGTTTCAAAAGTGGCATAGGATGCACATGTAAGTTCATGCAGTACTCTTGTCTTATTTTGTATTTTTATTTATACCTTCATAGCTTAATTACAAAATTTGGTGCAGAATCAAATGTTGGAACTCTAGTCCTAGCCCACCTCAGAGGTTTCTTAGCCAGTCGAGATCGTTTTGTGCTAGTAGTTTTTCGACCTCATTTTCGTAA

mRNA sequence

ATGAGCAATCATGGACGAACAAGGATGCTAGACAAAAGTAGCCTTACAATTATAGTAGTGGGTCCAAGTCGTTTCTACAACGACGACATGAGCTCATTGAGAAACGAGGTCAGCCAGTTAACCATGTGGAGTTATTTAGAGAAACACACAATCGGAGTGGTCAATTTGTTTCAAAAGTGGCATAGGATGCACATAATCAAATGTTGGAACTCTAGTCCTAGCCCACCTCAGAGGTTTCTTAGCCAGTCGAGATCGTTTTGTGCTAGTAGTTTTTCGACCTCATTTTCGTAA

Coding sequence (CDS)

ATGAGCAATCATGGACGAACAAGGATGCTAGACAAAAGTAGCCTTACAATTATAGTAGTGGGTCCAAGTCGTTTCTACAACGACGACATGAGCTCATTGAGAAACGAGGTCAGCCAGTTAACCATGTGGAGTTATTTAGAGAAACACACAATCGGAGTGGTCAATTTGTTTCAAAAGTGGCATAGGATGCACATAATCAAATGTTGGAACTCTAGTCCTAGCCCACCTCAGAGGTTTCTTAGCCAGTCGAGATCGTTTTGTGCTAGTAGTTTTTCGACCTCATTTTCGTAA

Protein sequence

MSNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWHRMHIIKCWNSSPSPPQRFLSQSRSFCASSFSTSFS

Homology

[Close]

BLAST of Cmc08g0226811 vs. NCBI nr
Match: TYK23153.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 7.2e-22
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           +NH RTR+LDKSSLTIIV GPSRFYND  SSL NEVSQLT+WSY  KH +GV   F++  
Sbjct: 104 TNHRRTRLLDKSSLTIIVAGPSRFYNDSTSSLSNEVSQLTVWSYSRKHMLGVARSFRR-- 163

Query: 62  RMHIIKCWNSSPSPPQRFL 81
               IKCWNSSPSPPQR L
Sbjct: 164 ----IKCWNSSPSPPQRIL 176

[Close]

BLAST of Cmc08g0226811 vs. NCBI nr
Match: KAA0062189.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-19
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1   MSNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKW 60
           MSNHGRTR+LD+SSLTII VG +RFYND  S LR + SQ TMWS  +KHT  +    ++ 
Sbjct: 29  MSNHGRTRLLDRSSLTIIAVGKNRFYNDSTSLLRRKESQSTMWSCFKKHTFELGRSCRRP 88

Query: 61  HRMHIIKCWNSSPSPPQRFLSQS 84
            RMHIIKCWNS+P+ PQR +S S
Sbjct: 89  QRMHIIKCWNSNPNLPQRVVSHS 111

[Close]

BLAST of Cmc08g0226811 vs. NCBI nr
Match: KAA0058246.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 7.4e-19
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           SNHGRTR+LD+SSLTIIV GPSRFYND+ SS R + S   +WS  EKHT  +    ++  
Sbjct: 171 SNHGRTRLLDRSSLTIIVAGPSRFYNDNTSSQREKESWSIVWSCSEKHTFELERSCRRPP 230

Query: 62  RMHIIKCWNSSPSPPQRFLSQS 84
           RMHIIKCWNS+PS PQR +S S
Sbjct: 231 RMHIIKCWNSNPSLPQRVVSHS 252

[Close]

BLAST of Cmc08g0226811 vs. NCBI nr
Match: TYK28852.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           SNHG+TR+LD+SSLTIIV GPSRFYND MSSL+ E SQ  +W+   KHT  + +  ++  
Sbjct: 111 SNHGQTRLLDRSSLTIIVAGPSRFYNDSMSSLKEEDSQSIVWNCFGKHTFELGHSCRRPP 170

Query: 62  RMHIIKCWNSSPSPPQRFLSQS 84
           RM IIKCWNS+PS PQR +S S
Sbjct: 171 RMRIIKCWNSNPSLPQRVVSHS 192

[Close]

BLAST of Cmc08g0226811 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 2  SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
          SNH RTR+LD+SSLTIIV GPS FYND MSSL+ E S+  +W+  EKHT  + +  ++  
Sbjct: 18 SNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRLP 77

Query: 62 RMHIIKCWNSSPSPPQRFLSQS 84
          RM IIKCWNS+PS PQR ++ S
Sbjct: 78 RMRIIKCWNSNPSLPQRIVTHS 99

[Close]

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: A0A5D3DHV0 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001660 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.5e-22
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           +NH RTR+LDKSSLTIIV GPSRFYND  SSL NEVSQLT+WSY  KH +GV   F++  
Sbjct: 104 TNHRRTRLLDKSSLTIIVAGPSRFYNDSTSSLSNEVSQLTVWSYSRKHMLGVARSFRR-- 163

Query: 62  RMHIIKCWNSSPSPPQRFL 81
               IKCWNSSPSPPQR L
Sbjct: 164 ----IKCWNSSPSPPQRIL 176

[Close]

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: A0A5A7V928 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005820 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.2e-20
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1   MSNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKW 60
           MSNHGRTR+LD+SSLTII VG +RFYND  S LR + SQ TMWS  +KHT  +    ++ 
Sbjct: 29  MSNHGRTRLLDRSSLTIIAVGKNRFYNDSTSLLRRKESQSTMWSCFKKHTFELGRSCRRP 88

Query: 61  HRMHIIKCWNSSPSPPQRFLSQS 84
            RMHIIKCWNS+P+ PQR +S S
Sbjct: 89  QRMHIIKCWNSNPNLPQRVVSHS 111

[Close]

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: A0A5A7UVP6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005710 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.6e-19
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           SNHGRTR+LD+SSLTIIV GPSRFYND+ SS R + S   +WS  EKHT  +    ++  
Sbjct: 171 SNHGRTRLLDRSSLTIIVAGPSRFYNDNTSSQREKESWSIVWSCSEKHTFELERSCRRPP 230

Query: 62  RMHIIKCWNSSPSPPQRFLSQS 84
           RMHIIKCWNS+PS PQR +S S
Sbjct: 231 RMHIIKCWNSNPSLPQRVVSHS 252

[Close]

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: A0A5D3DZ15 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00610 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.1e-19
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 2   SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
           SNHG+TR+LD+SSLTIIV GPSRFYND MSSL+ E SQ  +W+   KHT  + +  ++  
Sbjct: 111 SNHGQTRLLDRSSLTIIVAGPSRFYNDSMSSLKEEDSQSIVWNCFGKHTFELGHSCRRPP 170

Query: 62  RMHIIKCWNSSPSPPQRFLSQS 84
           RM IIKCWNS+PS PQR +S S
Sbjct: 171 RMRIIKCWNSNPSLPQRVVSHS 192

[Close]

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL
Match: E5GCP2 (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.2e-18
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 2  SNHGRTRMLDKSSLTIIVVGPSRFYNDDMSSLRNEVSQLTMWSYLEKHTIGVVNLFQKWH 61
          SNH RTR+LD+SSLTIIV GPS FYND MSSL+ E S+  +W+  EKHT  + +  ++  
Sbjct: 18 SNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRLP 77

Query: 62 RMHIIKCWNSSPSPPQRFLSQS 84
          RM IIKCWNS+PS PQR ++ S
Sbjct: 78 RMRIIKCWNSNPSLPQRIVTHS 99

The following BLAST results are available for this feature:

BLAST of Cmc08g0226811 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23153.1	7.2e-22	69.62	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0062189.1	1.5e-19	61.45	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0058246.1	7.4e-19	62.20	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
TYK28852.1	1.3e-18	60.98	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
ADN34241.1	1.1e-17	58.54	NBS-LRR type resistance protein [Cucumis melo subsp. melo]	[more]

BLAST of Cmc08g0226811 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHV0	3.5e-22	69.62	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V928	7.2e-20	61.45	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UVP6	3.6e-19	62.20	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DZ15	6.1e-19	60.98	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
E5GCP2	5.2e-18	58.54	NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Cmc08g0226811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0226811.1	Cmc08g0226811.1	mRNA