Cmc08g0226761 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0226761
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-Pol
Location	CMiso1.1chr08: 19155120 .. 19155878 (+)
RNA-Seq Expression	Cmc08g0226761
Synteny	Cmc08g0226761

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCAATGTTGCATACTGTCTTCTAACCGAGGATGGAGAGCCATTAACTCTAAAAGATGCAATGACCAGTTCAGATGCTGCTCAGTGGATGACAGCTATGCAGGAAGAAATAGAAGCTCTTCATAAGAACAAGACTTGGGAACTCGTAATGCTACCACAAGGGAGAAAGCCCATTGGGAACAAGTGAGTGTATAAGATAAAACGCAATAATGATGACCAAGTAGAGCGATATCGTGCAAGATTGGTGATAAAGGGATATGCTCAGAAAAAAGGCATTGACTACAATGAAATATTTTCTCCAGTAGTTCGACTTACTACTGTTAGAATAGTTTTAGCAATATGTGCTACATTTGACTTACACTTGGAGCAGTTAGCTGTAAAAACTGCATTTCTCCATGGAGATCTTGAAGAAGAAATATATATGCTTCAACTAGAAGGCTTTGAAGCAAAAGGAAAAGATAAATTGGTTTGCAAGTTAAACAAGTCTCTATACGGTCTCAAACAGGCGTTAAGGTGTTGGTACAAGTCTCTAGACCCTTATGCATATTTTAAGAGGTTTGGAGAAAAAGACTTCATTGTCTTATTGTTGTACGTAGACGACATGTTGGTAGTAGGCTCTAACAAAGATCATATTGAAGAATTGAAGGCTCATTTGGCTAGGGAATTTGAAATGAAAGACTTGGGACTAGCAAACAAGATTCTAGGGATGCAAATTCACCGAGACATAAATAATAGGAAGATTTGGCTATCTTAG

mRNA sequence

ATGGAGAGCAATGTTGCATACTGTCTTCTAACCGAGGATGGAGAGCCATTAACTCTAAAAGATGCAATGACCAGTTCAGATGCTGCTCAGTGGATGACAGCTATGCAGGAAGAAATAGAAGCTCTTCATAAGAACAAGACTTGGGAACTCGTAATGCTACCACAAGGGAGAAAGCCCATTGGGAACAAATTGGTGATAAAGGGATATGCTCAGAAAAAAGGCATTGACTACAATGAAATATTTTCTCCAGTAGTTCGACTTACTACTGTTAGAATAGTTTTAGCAATATGTGCTACATTTGACTTACACTTGGAGCAGTTAGCTGTAAAAACTGCATTTCTCCATGGAGATCTTGAAGAAGAAATATATATGCTTCAACTAGAAGGCTTTGAAGCAAAAGGAAAAGATAAATTGGTTTGCAAGTTAAACAAGTCTCTATACGGTCTCAAACAGGCGTTAAGGTGTTGGTACAAGTCTCTAGACCCTTATGCATATTTTAAGAGGTTTGGAGAAAAAGACTTCATTGTCTTATTGTTGTACGTAGACGACATGTTGGTAGTAGGCTCTAACAAAGATCATATTGAAGAATTGAAGGCTCATTTGGCTAGGGAATTTGAAATGAAAGACTTGGGACTAGCAAACAAGATTCTAGGGATGCAAATTCACCGAGACATAAATAATAGGAAGATTTGGCTATCTTAG

Coding sequence (CDS)

ATGGAGAGCAATGTTGCATACTGTCTTCTAACCGAGGATGGAGAGCCATTAACTCTAAAAGATGCAATGACCAGTTCAGATGCTGCTCAGTGGATGACAGCTATGCAGGAAGAAATAGAAGCTCTTCATAAGAACAAGACTTGGGAACTCGTAATGCTACCACAAGGGAGAAAGCCCATTGGGAACAAATTGGTGATAAAGGGATATGCTCAGAAAAAAGGCATTGACTACAATGAAATATTTTCTCCAGTAGTTCGACTTACTACTGTTAGAATAGTTTTAGCAATATGTGCTACATTTGACTTACACTTGGAGCAGTTAGCTGTAAAAACTGCATTTCTCCATGGAGATCTTGAAGAAGAAATATATATGCTTCAACTAGAAGGCTTTGAAGCAAAAGGAAAAGATAAATTGGTTTGCAAGTTAAACAAGTCTCTATACGGTCTCAAACAGGCGTTAAGGTGTTGGTACAAGTCTCTAGACCCTTATGCATATTTTAAGAGGTTTGGAGAAAAAGACTTCATTGTCTTATTGTTGTACGTAGACGACATGTTGGTAGTAGGCTCTAACAAAGATCATATTGAAGAATTGAAGGCTCATTTGGCTAGGGAATTTGAAATGAAAGACTTGGGACTAGCAAACAAGATTCTAGGGATGCAAATTCACCGAGACATAAATAATAGGAAGATTTGGCTATCTTAG

Protein sequence

MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPIGNKLVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSLDPYAYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDINNRKIWLS

Homology

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BLAST of Cmc08g0226761 vs. NCBI nr
Match: TYK21895.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 443.7 bits (1140), Expect = 9.6e-121
Identity = 224/247 (90.69%), Postives = 228/247 (92.31%), Query Frame = 0


Query: 1   MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
           MESNVAY LL EDGEPLTLKDAMTSSD AQWMTAMQEEIEALHKNKTWELVMLP+GRKPI
Sbjct: 1   MESNVAYYLLIEDGEPLTLKDAMTSSDVAQWMTAMQEEIEALHKNKTWELVMLPRGRKPI 60

Query: 61  GNKLVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHGDLEE 120
           GNKLVIKGYAQK+GIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHGDLEE
Sbjct: 61  GNKLVIKGYAQKEGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHGDLEE 120

Query: 121 EIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK--------------SLDPYAYF 180
           EIYMLQLEGFE KGKDKLVCKLNKSLYGLK ALRCWYK              ++DPYAYF
Sbjct: 121 EIYMLQLEGFEVKGKDKLVCKLNKSLYGLKHALRCWYKRFDSFIVSLGYNRLNIDPYAYF 180

Query: 181 KRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDIN 234
           KRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDIN
Sbjct: 181 KRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDIN 240

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BLAST of Cmc08g0226761 vs. NCBI nr
Match: KAA0060044.1 (Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 400.2 bits (1027), Expect = 1.2e-107
Identity = 205/233 (87.98%), Postives = 205/233 (87.98%), Query Frame = 0


Query: 1   MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
           MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI
Sbjct: 1   MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60

Query: 61  GNKLVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHGDLEE 120
           GNK                            IVLAICATFDLHLEQLAVKTAFLHGDLEE
Sbjct: 61  GNK----------------------------IVLAICATFDLHLEQLAVKTAFLHGDLEE 120

Query: 121 EIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSLDPYAYFKRFGEKDFIVLLLY 180
           EIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSLDPYAYFKRFGEKDFIVLLLY
Sbjct: 121 EIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSLDPYAYFKRFGEKDFIVLLLY 180

Query: 181 VDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDINNRKIWLS 234
           VDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDINNRKIWLS
Sbjct: 181 VDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDINNRKIWLS 205

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BLAST of Cmc08g0226761 vs. NCBI nr
Match: BAD34493.1 (Gag-Pol [Ipomoea batatas])

HSP 1 Score: 368.2 bits (944), Expect = 5.1e-98
Identity = 189/266 (71.05%), Postives = 207/266 (77.82%), Query Frame = 0


Query: 1    MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
            ME NVAYCLLTEDGEP T ++A+ SSD +QW  AMQEEIEALHKN TW+LV LPQGRKPI
Sbjct: 766  MEGNVAYCLLTEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPI 825

Query: 61   GNK-------------------LVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFD 120
            GNK                   LV+KGYAQK+GID+NEIFSPVVRLTTVR+VLA+CATF+
Sbjct: 826  GNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFN 885

Query: 121  LHLEQLAVKTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK--- 180
            LHLEQL VKTAFLHGDLEEEIYMLQ EGFE K    LVC+LNKSLYGLKQA RCWYK   
Sbjct: 886  LHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFD 945

Query: 181  -----------SLDPYAYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEM 234
                       + DP AYFKRFG+ +F++LLLYVDDMLV G NKDHI+ELKA LAREFEM
Sbjct: 946  SFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEM 1005

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BLAST of Cmc08g0226761 vs. NCBI nr
Match: KAE8725385.1 (Desiccation-related protein PCC13-62 [Hibiscus syriacus])

HSP 1 Score: 364.8 bits (935), Expect = 5.7e-97
Identity = 187/266 (70.30%), Postives = 208/266 (78.20%), Query Frame = 0


Query: 1    MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
            +E N+AYCLLTEDGEP T ++A+ SSDA+ WM AMQEEIEALHKN TW+LV LPQGRKPI
Sbjct: 1091 IEGNIAYCLLTEDGEPSTYQEAINSSDASLWMMAMQEEIEALHKNNTWDLVPLPQGRKPI 1150

Query: 61   GNK-------------------LVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFD 120
            GNK                   LV+KGYAQK+GID+NEIFSPVVRLTTVR++LA+CAT +
Sbjct: 1151 GNKWVFKIKRNVDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVLLAMCATLN 1210

Query: 121  LHLEQLAVKTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK--- 180
            LHLEQL VKTAFLHG+LEEEIYMLQ EGFE K K  LVC+LNKSLYGLKQA RCWYK   
Sbjct: 1211 LHLEQLDVKTAFLHGNLEEEIYMLQPEGFEEKEKKNLVCRLNKSLYGLKQAPRCWYKRFD 1270

Query: 181  -----------SLDPYAYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEM 234
                       + DP AYFKR G+ DF++LLLYVDDMLV G NKDHIEELKA LAREFEM
Sbjct: 1271 SFIMCLGYNRLNADPCAYFKRSGDNDFVILLLYVDDMLVAGPNKDHIEELKAQLAREFEM 1330

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BLAST of Cmc08g0226761 vs. NCBI nr
Match: KAE8731597.1 (hypothetical protein F3Y22_tig00002793pilonHSYRG00074 [Hibiscus syriacus])

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96
Identity = 185/266 (69.55%), Postives = 207/266 (77.82%), Query Frame = 0


Query: 1   MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
           +E N+AYCLLTEDGEP T ++A+ SSDA+ WM AMQEEIEALHKN TW+LV LPQGRKPI
Sbjct: 704 IEGNIAYCLLTEDGEPSTYQEAINSSDASLWMMAMQEEIEALHKNNTWDLVPLPQGRKPI 763

Query: 61  GNK-------------------LVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFD 120
           GNK                   LV+KGYAQK+GID+NEIFSPVVRLTTVR+VLA+CATF+
Sbjct: 764 GNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFN 823

Query: 121 LHLEQLAVKTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK--- 180
           LHLEQL VKT FLHG+LEE+IYMLQ EGFE   K  LVC+LNKSLYGLKQA RCWYK   
Sbjct: 824 LHLEQLDVKTTFLHGNLEEDIYMLQPEGFEEDKKKNLVCRLNKSLYGLKQATRCWYKRFD 883

Query: 181 -----------SLDPYAYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEM 234
                      + DP AYFKR G+ DF++L+LYVDDMLV G NKDHIEELKA LAREFEM
Sbjct: 884 SFIMCLGYNRLNADPCAYFKRSGDNDFVILMLYVDDMLVAGPNKDHIEELKAQLAREFEM 943

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BLAST of Cmc08g0226761 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 9.8e-68
Identity = 136/260 (52.31%), Postives = 179/260 (68.85%), Query Frame = 0


Query: 7    YCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPIGNK--- 66
            Y L+++D EP +LK+ ++  +  Q M AMQEE+E+L KN T++LV LP+G++P+  K   
Sbjct: 802  YVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVF 861

Query: 67   ----------------LVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQL 126
                            LV+KG+ QKKGID++EIFSPVV++T++R +L++ A+ DL +EQL
Sbjct: 862  KLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQL 921

Query: 127  AVKTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSL------- 186
             VKTAFLHGDLEEEIYM Q EGFE  GK  +VCKLNKSLYGLKQA R WY          
Sbjct: 922  DVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQ 981

Query: 187  -------DPYAYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLA 234
                   DP  YFKRF E +FI+LLLYVDDML+VG +K  I +LK  L++ F+MKDLG A
Sbjct: 982  TYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPA 1041

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BLAST of Cmc08g0226761 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-29
Identity = 81/252 (32.14%), Postives = 128/252 (50.79%), Query Frame = 0


Query: 16   PLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGR-------------KPIGN 75
            P +  +     D + W  A+  E+ A   N TW +   P+ +               +GN
Sbjct: 891  PNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGN 950

Query: 76   ------KLVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHG 135
                  +LV +G+ QK  IDY E F+PV R+++ R +L++   ++L + Q+ VKTAFL+G
Sbjct: 951  PIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNG 1010

Query: 136  DLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK--------------SLDP 195
             L+EEIYM   +G      +  VCKLNK++YGLKQA RCW++              S+D 
Sbjct: 1011 TLKEEIYMRLPQGISCNSDN--VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDR 1070

Query: 196  YAYFKRFGE-KDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQI 234
              Y    G   + I +LLYVDD+++   +   +   K +L  +F M DL      +G++I
Sbjct: 1071 CIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI 1130

[Close]

BLAST of Cmc08g0226761 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.2e-29
Identity = 84/247 (34.01%), Postives = 118/247 (47.77%), Query Frame = 0


Query: 10   LTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPIGN------- 69
            L  + EP T   A+      +W  AM  EI A   N TW+LV  P     I         
Sbjct: 950  LAAESEPRTAIQALKDE---RWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTK 1009

Query: 70   -------------KLVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAV 129
                         +LV KGY Q+ G+DY E FSPV++ T++RIVL +       + QL V
Sbjct: 1010 KYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDV 1069

Query: 130  KTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSLDPY------ 189
              AFL G L +++YM Q  GF  K +   VCKL K+LYGLKQA R WY  L  Y      
Sbjct: 1070 NNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGF 1129

Query: 190  -------AYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKI 224
                   + F     K  + +L+YVDD+L+ G++   +     +L++ F +KD    +  
Sbjct: 1130 VNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYF 1189

[Close]

BLAST of Cmc08g0226761 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.2e-27
Identity = 83/247 (33.60%), Postives = 118/247 (47.77%), Query Frame = 0


Query: 10   LTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPIGN------- 69
            L  + EP T   AM      +W  AM  EI A   N TW+LV  P     I         
Sbjct: 933  LAANSEPRTAIQAMKDD---RWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTK 992

Query: 70   -------------KLVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAV 129
                         +LV KGY Q+ G+DY E FSPV++ T++RIVL +       + QL V
Sbjct: 993  KFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDV 1052

Query: 130  KTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSLDPY------ 189
              AFL G L +E+YM Q  GF  K +   VC+L K++YGLKQA R WY  L  Y      
Sbjct: 1053 NNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGF 1112

Query: 190  -------AYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKI 224
                   + F     +  I +L+YVDD+L+ G++   ++     L++ F +K+    +  
Sbjct: 1113 VNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYF 1172

[Close]

BLAST of Cmc08g0226761 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 43/131 (32.82%), Postives = 65/131 (49.62%), Query Frame = 0


Query: 109 VKTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK----SLDPYA 168
           V TAFL+  ++E IY+ Q  GF  +     V +L   +YGLKQA   W +    +L    
Sbjct: 3   VDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIG 62

Query: 169 YFKRFGEKDF---------IVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANK 227
           + +  GE            I + +YVDD+LV   +    + +K  L + + MKDLG  +K
Sbjct: 63  FCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDK 122

[Close]

BLAST of Cmc08g0226761 vs. ExPASy TrEMBL
Match: A0A5D3DEC2 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00310 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 4.6e-121
Identity = 224/247 (90.69%), Postives = 228/247 (92.31%), Query Frame = 0


Query: 1   MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
           MESNVAY LL EDGEPLTLKDAMTSSD AQWMTAMQEEIEALHKNKTWELVMLP+GRKPI
Sbjct: 1   MESNVAYYLLIEDGEPLTLKDAMTSSDVAQWMTAMQEEIEALHKNKTWELVMLPRGRKPI 60

Query: 61  GNKLVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHGDLEE 120
           GNKLVIKGYAQK+GIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHGDLEE
Sbjct: 61  GNKLVIKGYAQKEGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHGDLEE 120

Query: 121 EIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK--------------SLDPYAYF 180
           EIYMLQLEGFE KGKDKLVCKLNKSLYGLK ALRCWYK              ++DPYAYF
Sbjct: 121 EIYMLQLEGFEVKGKDKLVCKLNKSLYGLKHALRCWYKRFDSFIVSLGYNRLNIDPYAYF 180

Query: 181 KRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDIN 234
           KRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDIN
Sbjct: 181 KRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDIN 240

[Close]

BLAST of Cmc08g0226761 vs. ExPASy TrEMBL
Match: A0A5A7UYA7 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00040 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.9e-108
Identity = 205/233 (87.98%), Postives = 205/233 (87.98%), Query Frame = 0


Query: 1   MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
           MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI
Sbjct: 1   MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60

Query: 61  GNKLVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLHGDLEE 120
           GNK                            IVLAICATFDLHLEQLAVKTAFLHGDLEE
Sbjct: 61  GNK----------------------------IVLAICATFDLHLEQLAVKTAFLHGDLEE 120

Query: 121 EIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSLDPYAYFKRFGEKDFIVLLLY 180
           EIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSLDPYAYFKRFGEKDFIVLLLY
Sbjct: 121 EIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYKSLDPYAYFKRFGEKDFIVLLLY 180

Query: 181 VDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDINNRKIWLS 234
           VDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDINNRKIWLS
Sbjct: 181 VDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQIHRDINNRKIWLS 205

[Close]

BLAST of Cmc08g0226761 vs. ExPASy TrEMBL
Match: Q6BCY1 (Gag-Pol OS=Ipomoea batatas OX=4120 GN=Rtsp-1AA PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.5e-98
Identity = 189/266 (71.05%), Postives = 207/266 (77.82%), Query Frame = 0


Query: 1    MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
            ME NVAYCLLTEDGEP T ++A+ SSD +QW  AMQEEIEALHKN TW+LV LPQGRKPI
Sbjct: 766  MEGNVAYCLLTEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPI 825

Query: 61   GNK-------------------LVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFD 120
            GNK                   LV+KGYAQK+GID+NEIFSPVVRLTTVR+VLA+CATF+
Sbjct: 826  GNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFN 885

Query: 121  LHLEQLAVKTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK--- 180
            LHLEQL VKTAFLHGDLEEEIYMLQ EGFE K    LVC+LNKSLYGLKQA RCWYK   
Sbjct: 886  LHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFD 945

Query: 181  -----------SLDPYAYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEM 234
                       + DP AYFKRFG+ +F++LLLYVDDMLV G NKDHI+ELKA LAREFEM
Sbjct: 946  SFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEM 1005

[Close]

BLAST of Cmc08g0226761 vs. ExPASy TrEMBL
Match: A0A6A3C800 (Desiccation-related protein PCC13-62 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00008864pilonHSYRG00005 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.7e-97
Identity = 187/266 (70.30%), Postives = 208/266 (78.20%), Query Frame = 0


Query: 1    MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
            +E N+AYCLLTEDGEP T ++A+ SSDA+ WM AMQEEIEALHKN TW+LV LPQGRKPI
Sbjct: 1091 IEGNIAYCLLTEDGEPSTYQEAINSSDASLWMMAMQEEIEALHKNNTWDLVPLPQGRKPI 1150

Query: 61   GNK-------------------LVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFD 120
            GNK                   LV+KGYAQK+GID+NEIFSPVVRLTTVR++LA+CAT +
Sbjct: 1151 GNKWVFKIKRNVDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVLLAMCATLN 1210

Query: 121  LHLEQLAVKTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK--- 180
            LHLEQL VKTAFLHG+LEEEIYMLQ EGFE K K  LVC+LNKSLYGLKQA RCWYK   
Sbjct: 1211 LHLEQLDVKTAFLHGNLEEEIYMLQPEGFEEKEKKNLVCRLNKSLYGLKQAPRCWYKRFD 1270

Query: 181  -----------SLDPYAYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEM 234
                       + DP AYFKR G+ DF++LLLYVDDMLV G NKDHIEELKA LAREFEM
Sbjct: 1271 SFIMCLGYNRLNADPCAYFKRSGDNDFVILLLYVDDMLVAGPNKDHIEELKAQLAREFEM 1330

[Close]

BLAST of Cmc08g0226761 vs. ExPASy TrEMBL
Match: A0A6A3CSP3 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002793pilonHSYRG00074 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 8.0e-97
Identity = 185/266 (69.55%), Postives = 207/266 (77.82%), Query Frame = 0


Query: 1   MESNVAYCLLTEDGEPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPI 60
           +E N+AYCLLTEDGEP T ++A+ SSDA+ WM AMQEEIEALHKN TW+LV LPQGRKPI
Sbjct: 704 IEGNIAYCLLTEDGEPSTYQEAINSSDASLWMMAMQEEIEALHKNNTWDLVPLPQGRKPI 763

Query: 61  GNK-------------------LVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFD 120
           GNK                   LV+KGYAQK+GID+NEIFSPVVRLTTVR+VLA+CATF+
Sbjct: 764 GNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFN 823

Query: 121 LHLEQLAVKTAFLHGDLEEEIYMLQLEGFEAKGKDKLVCKLNKSLYGLKQALRCWYK--- 180
           LHLEQL VKT FLHG+LEE+IYMLQ EGFE   K  LVC+LNKSLYGLKQA RCWYK   
Sbjct: 824 LHLEQLDVKTTFLHGNLEEDIYMLQPEGFEEDKKKNLVCRLNKSLYGLKQATRCWYKRFD 883

Query: 181 -----------SLDPYAYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEM 234
                      + DP AYFKR G+ DF++L+LYVDDMLV G NKDHIEELKA LAREFEM
Sbjct: 884 SFIMCLGYNRLNADPCAYFKRSGDNDFVILMLYVDDMLVAGPNKDHIEELKAQLAREFEM 943

[Close]

BLAST of Cmc08g0226761 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-38
Identity = 94/245 (38.37%), Postives = 135/245 (55.10%), Query Frame = 0


Query: 15  EPLTLKDAMTSSDAAQWMTAMQEEIEALHKNKTWELVMLPQGRKPIGNK----------- 74
           EP T  +A    +   W  AM +EI A+    TWE+  LP  +KPIG K           
Sbjct: 85  EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 144

Query: 75  --------LVIKGYAQKKGIDYNEIFSPVVRLTTVRIVLAICATFDLHLEQLAVKTAFLH 134
                   LV KGY Q++GID+ E FSPV +LT+V+++LAI A ++  L QL +  AFL+
Sbjct: 145 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 204

Query: 135 GDLEEEIYMLQLEGFEAKGKDKL----VCKLNKSLYGLKQALRCWY-------------K 194
           GDL+EEIYM    G+ A+  D L    VC L KS+YGLKQA R W+             +
Sbjct: 205 GDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQ 264

Query: 195 SLDPYAYFKRFGEKDFIVLLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILG 224
           S   + YF +     F+ +L+YVDD+++  +N   ++ELK+ L   F+++DLG     LG
Sbjct: 265 SHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLG 324

[Close]

BLAST of Cmc08g0226761 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-08
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 31  WMTAMQEEIEALHKNKTWELVMLPQGRKPIGNK-------------------LVIKGYAQ 90
           W  AMQEE++AL +NKTW LV  P  +  +G K                   LV KG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 91  KKGIDYNEIFSPVVRLTTVRIVLAICATFDL 103
           ++GI + E +SPVVR  T+R +L +    ++
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVAQQLEV 130

[Close]

BLAST of Cmc08g0226761 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 6.0e-04
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 177 LLLYVDDMLVVGSNKDHIEELKAHLAREFEMKDLGLANKILGMQI 222
           LLLYVDD+L+ GS+   +  L   L+  F MKDLG  +  LG+QI
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQI 47

The following BLAST results are available for this feature:

BLAST of Cmc08g0226761 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21895.1	9.6e-121	90.69	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0060044.1	1.2e-107	87.98	Gag-Pol [Cucumis melo var. makuwa]	[more]
BAD34493.1	5.1e-98	71.05	Gag-Pol [Ipomoea batatas]	[more]
KAE8725385.1	5.7e-97	70.30	Desiccation-related protein PCC13-62 [Hibiscus syriacus]	[more]
KAE8731597.1	1.6e-96	69.55	hypothetical protein F3Y22_tig00002793pilonHSYRG00074 [Hibiscus syriacus]	[more]

BLAST of Cmc08g0226761 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.8e-68	52.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.8e-29	32.14	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	5.2e-29	34.01	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.2e-27	33.60	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	1.4e-10	32.82	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0226761 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DEC2	4.6e-121	90.69	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00310 PE...	[more]
A0A5A7UYA7	5.9e-108	87.98	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00040 PE=4 S...	[more]
Q6BCY1	2.5e-98	71.05	Gag-Pol OS=Ipomoea batatas OX=4120 GN=Rtsp-1AA PE=4 SV=1	[more]
A0A6A3C800	2.7e-97	70.30	Desiccation-related protein PCC13-62 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig...	[more]
A0A6A3CSP3	8.0e-97	69.55	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002793pilon...	[more]

BLAST of Cmc08g0226761 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.2e-38	38.37	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.4e-08	36.26	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	6.0e-04	48.89	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 45..230 e-value: 1.8E-47 score: 162.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 63..201
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 63..201
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 64..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0226761.1	Cmc08g0226761.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0046488	phosphatidylinositol metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016020	membrane
molecular_function	GO:0043168	anion binding
molecular_function	GO:0016757	glycosyltransferase activity
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0016307	phosphatidylinositol phosphate kinase activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0046914	transition metal ion binding