Cmc08g0225431 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0225431
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	CesA-4
Location	CMiso1.1chr08: 16350074 .. 16351496 (+)
RNA-Seq Expression	Cmc08g0225431
Synteny	Cmc08g0225431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGAAGAGATCAAGATCATCATCAACTTCTGAAATCAATCTCTTTTGTAACTTCAAACTCTAAAACACAGCACCGAATAAAATAAATTAAATACGATCGTCCATAGATAAGCTATAGGTTTGTACCTGCATTAGCTTCCAGATACCAATTCAGGGACGATAACAGAAAATAAATTGCCTGATCTGGATCATGTTTTCGTTTGAGACTATTGTTTCCTTTCTTCATCTTATCTGTATAAAATATAAACTCCCTTTAGCAGTTGATTCCACACTGTTCGACATCAGGACCAGTTACCCGAGTTGTGAAGGGATCGATCCGAACCCATAAAAGAGAGAAGATTGAGGCAAGGAGGATAGACCATACAACCACAATTGTGGGAGTTCGGTTCTGGCGACCCATCAGACCCTTAAGGAAGGGATACAGATGAATAATCACCCAGAAAGCAAAGAACAGTTTGCCGAAAAGGGGTCCCCAAGATTGATAACCACTGTTGATGGCATAAGAAATTCCAGCAACAACTCCAACTATGTTGATAATTAGGAGAGTAGTTGGGGGAATGAGAAGAGTGGTCCACTTGAACATGTAGAGCTCAGCAAAATCTCCATCTTCGTCGGATGCTTTCGAAGTAACCGTGAAGTTTGTGTCAATTCCCGCAAGAACTTTAAGAAGACCTTGGAAGACAGCAAAAAGATGGGCCGACACACCTCCAATAACCCAGAATTGTTCGTTTCTCCACCATTCATCAATTCCAACACCACTCCATCTCATTTCCAGAATACCGGTAGCAAAGATGGAAAGAAAGAGAGAGATGAACCAGATGCTAGCAAGGTTGCTGATCTGTAATGAAAGAACAAACAACAAAATACACATTGATTCAGTGATACTTGAGCAAAAGGATTGTATTTGTAGCACAGTTTTTATAAACTAAATGCATCTTTAACATAGAAATCACTGATTAACTGATGGATTCCAAAAAAAATGTAATCCTTCTTACCTGAGGAATGATAAACTTTCCAGTGAGTAAACATATGGCAGGTAAGGTACAATAGGCAAGAAGAGGAATGGATGTTATTGGATAAATGGTTGTGTTAACATAAGCAAATCTCTCTAGCCATTTCAACCGTCCACCATAACCGTACCACATAGGACAATGCCGACTGAAAAGAATTTCAACTGAACCTAACGCCCACCGAAGCACTTGGTTAAGACGATCAGAAAGATTAATGGGAGCAGATCCTTTAAATGCAGGACGGTCTGGGATGCAATAGATTGATCTCCAGCCACGGGCATGCATCTTGAACCCTGTCAAAATATCTTCTGTGACGGAACCATAGATCCATCCAATCTGCACCACCAAATGTTAACACATCTCTTAGAACAGAAAATTTCATCAAAAAATTATGAGCGCAAACAATTGTTGCT

mRNA sequence

TTTGAAGAGATCAAGATCATCATCAACTTCTGAAATCAATCTCTTTTGTAACTTCAAACTCTAAAACACAGCACCGAATAAAATAAATTAAATACGATCGTCCATAGATAAGCTATAGGTTTGTACCTGCATTAGCTTCCAGATACCAATTCAGGGACGATAACAGAAAATAAATTGCCTGATCTGGATCATGTTTTCGTTTGAGACTATTGTTTCCTTTCTTCATCTTATCTGTATAAAATATAAACTCCCTTTAGCAGTTGATTCCACACTGTTCGACATCAGGACCAGTTACCCGAGTTGTGAAGGGATCGATCCGAACCCATAAAAGAGAGAAGATTGAGGCAAGGAGGATAGACCATACAACCACAATTGTGGGAGTTCGGTTCTGGCGACCCATCAGACCCTTAAGGAAGGGATACAGATGAATAATCACCCAGAAAGCAAAGAACAGTTTGCCGAAAAGGGGTCCCCAAGATTGATAACCACTGTTGATGGCATAAGAAATTCCAGCAACAACTCCAACTATGTTGATAATTAGGAGAGTAGTTGGGGGAATGAGAAGAGTGGTCCACTTGAACATGTAGAGCTCAGCAAAATCTCCATCTTCGTCGGATGCTTTCGAAGTAACCGTGAAGTTTGTGTCAATTCCCGCAAGAACTTTAAGAAGACCTTGGAAGACAGCAAAAAGATGGGCCGACACACCTCCAATAACCCAGAATTGTTCGTTTCTCCACCATTCATCAATTCCAACACCACTCCATCTCATTTCCAGAATACCGGTAGCAAAGATGGAAAGAAAGAGAGAGATGAACCAGATGCTAGCAAGGTTGCTGATCTGTAATGAAAGAACAAACAACAAAATACACATTGATTCAGTGATACTTGAGCAAAAGGATTGTATTTGTAGCACAGTTTTTATAAACTAAATGCATCTTTAACATAGAAATCACTGATTAACTGATGGATTCCAAAAAAAATGTAATCCTTCTTACCTGAGGAATGATAAACTTTCCAGTGAGTAAACATATGGCAGGTAAGGTACAATAGGCAAGAAGAGGAATGGATGTTATTGGATAAATGGTTGTGTTAACATAAGCAAATCTCTCTAGCCATTTCAACCGTCCACCATAACCGTACCACATAGGACAATGCCGACTGAAAAGAATTTCAACTGAACCTAACGCCCACCGAAGCACTTGGTTAAGACGATCAGAAAGATTAATGGGAGCAGATCCTTTAAATGCAGGACGGTCTGGGATGCAATAGATTGATCTCCAGCCACGGGCATGCATCTTGAACCCTGTCAAAATATCTTCTGTGACGGAACCATAGATCCATCCAATCTGCACCACCAAATGTTAACACATCTCTTAGAACAGAAAATTTCATCAAAAAATTATGAGCGCAAACAATTGTTGCT

Coding sequence (CDS)

ATGGGCCGACACACCTCCAATAACCCAGAATTGTTCGTTTCTCCACCATTCATCAATTCCAACACCACTCCATCTCATTTCCAGAATACCGGTAGCAAAGATGGAAAGAAAGAGAGAGATGAACCAGATGCTAGCAAGGTTGCTGATCTGTAA

Protein sequence

MGRHTSNNPELFVSPPFINSNTTPSHFQNTGSKDGKKERDEPDASKVADL

Homology

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BLAST of Cmc08g0225431 vs. ExPASy TrEMBL
Match: A0A0A9I9I7 (CesA-4 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.4e-04
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1  MGRHTSNNPELFVSPPFINSNTTPSHFQNTGSKD 35
          MGR TSNNPELF+ PP +N+NTTP H ++T  K+
Sbjct: 1  MGRDTSNNPELFIPPPLVNANTTPPHLKDTSGKN 34

The following BLAST results are available for this feature:

BLAST of Cmc08g0225431 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc08g0225431 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc08g0225431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9I9I7	8.4e-04	61.76	CesA-4 OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of Cmc08g0225431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0225431.1	Cmc08g0225431.1	mRNA