Cmc08g0225001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0225001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-glucosidase
Location	CMiso1.1chr08: 15505930 .. 15506154 (+)
RNA-Seq Expression	Cmc08g0225001
Synteny	Cmc08g0225001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATTCATATGCATGGTTATGGTGCCCTTTAGATATGAAGAATTTATCAAGGACTTGCTATCATTGGTTGAATCTGGGGAGATTCCAATCACTAGGATTGATAATGCTGTTGAACGGATACTGAGAGTGAAGTTTGTTGCTGGTCTTTTTGGACATCCTTTGAGTGATAGATCATTGATAGGTGTCGTCGGTTGCAAGGCAAGTTTCCGACATCTATGGTAA

mRNA sequence

ATGATATTCATATGCATGGTTATGGTGCCCTTTAGATATGAAGAATTTATCAAGGACTTGCTATCATTGGTTGAATCTGGGGAGATTCCAATCACTAGGATTGATAATGCTGTTGAACGGATACTGAGAGTGAAGTTTGTTGCTGGTCTTTTTGGACATCCTTTGAGTGATAGATCATTGATAGGTGTCGTCGGTTGCAAGGCAAGTTTCCGACATCTATGGTAA

Coding sequence (CDS)

ATGATATTCATATGCATGGTTATGGTGCCCTTTAGATATGAAGAATTTATCAAGGACTTGCTATCATTGGTTGAATCTGGGGAGATTCCAATCACTAGGATTGATAATGCTGTTGAACGGATACTGAGAGTGAAGTTTGTTGCTGGTCTTTTTGGACATCCTTTGAGTGATAGATCATTGATAGGTGTCGTCGGTTGCAAGGCAAGTTTCCGACATCTATGGTAA

Protein sequence

MIFICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGVVGCKASFRHLW

Homology

[Close]

BLAST of Cmc08g0225001 vs. NCBI nr
Match: KAA0045425.1 (glycosyl hydrolase family 3 protein [Cucumis melo var. makuwa] >TYK04277.1 glycosyl hydrolase family 3 protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.3e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 12  RYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGVVGCKASFR 71
           RYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGVVGCKASFR
Sbjct: 69  RYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGVVGCKASFR 128

Query: 72  HLW 75
           HLW
Sbjct: 129 HLW 131

[Close]

BLAST of Cmc08g0225001 vs. NCBI nr
Match: TYJ97332.1 (beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPFRYEEFIKDLLSLVESGEIPI RID+AVERILRVKFVAGLF HP SDRSLI V
Sbjct: 317 IDMVMVPFRYEEFIKDLLSLVESGEIPIARIDDAVERILRVKFVAGLFEHPFSDRSLIDV 376

Query: 64  VGCKASFRHL 74
           VGCKASFRHL
Sbjct: 377 VGCKASFRHL 386

[Close]

BLAST of Cmc08g0225001 vs. NCBI nr
Match: KAE8653276.1 (hypothetical protein Csa_023195 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPFRYEEFIKDLLSLVESGEIPI RID+AVERILRVKFVAGLF HP SDRSLI V
Sbjct: 310 IDMVMVPFRYEEFIKDLLSLVESGEIPIARIDDAVERILRVKFVAGLFEHPFSDRSLIDV 369

Query: 64  VGCKASFRHLW 75
           VGCKASF+ LW
Sbjct: 370 VGCKASFQCLW 380

[Close]

BLAST of Cmc08g0225001 vs. NCBI nr
Match: KAA0031800.1 (beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 7.0e-25
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPFRYEEFIKDLLSLVESGEIPI RID+AVERILRVKFVAGLF HP SDRSLI V
Sbjct: 141 IDMVMVPFRYEEFIKDLLSLVESGEIPIARIDDAVERILRVKFVAGLFEHPFSDRSLIDV 200

Query: 64  VGCKASFRHL 74
           VGCKASF HL
Sbjct: 201 VGCKASFPHL 210

[Close]

BLAST of Cmc08g0225001 vs. NCBI nr
Match: XP_004150629.2 (uncharacterized protein LOC101214999 isoform X1 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 5.5e-22
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPFRYEEFIKDLLSLVESGEIPI RID+AVERILRVKFVAGLF HP SDRSLI V
Sbjct: 330 IDMVMVPFRYEEFIKDLLSLVESGEIPIARIDDAVERILRVKFVAGLFEHPFSDRSLIDV 389

Query: 64  VGCK 68
           VGCK
Sbjct: 390 VGCK 393

[Close]

BLAST of Cmc08g0225001 vs. ExPASy Swiss-Prot
Match: A7LXU3 (Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) OX=411476 GN=BACOVA_02659 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSD 58
           I M MVP+    F   L  LVE GE+ + RID+AV R+LR+K+  GLF HP  D
Sbjct: 343 IDMSMVPYEV-SFCDYLKELVEEGEVSMERIDDAVARVLRLKYRLGLFDHPYWD 395

[Close]

BLAST of Cmc08g0225001 vs. ExPASy TrEMBL
Match: A0A5D3BXN0 (Glycosyl hydrolase family 3 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4559G00310 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 12  RYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGVVGCKASFR 71
           RYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGVVGCKASFR
Sbjct: 69  RYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGVVGCKASFR 128

Query: 72  HLW 75
           HLW
Sbjct: 129 HLW 131

[Close]

BLAST of Cmc08g0225001 vs. ExPASy TrEMBL
Match: A0A5D3BBX9 (Beta-glucosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001380 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.2e-26
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPFRYEEFIKDLLSLVESGEIPI RID+AVERILRVKFVAGLF HP SDRSLI V
Sbjct: 317 IDMVMVPFRYEEFIKDLLSLVESGEIPIARIDDAVERILRVKFVAGLFEHPFSDRSLIDV 376

Query: 64  VGCKASFRHL 74
           VGCKASFRHL
Sbjct: 377 VGCKASFRHL 386

[Close]

BLAST of Cmc08g0225001 vs. ExPASy TrEMBL
Match: A0A5A7SM16 (Beta-glucosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00430 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.4e-25
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPFRYEEFIKDLLSLVESGEIPI RID+AVERILRVKFVAGLF HP SDRSLI V
Sbjct: 141 IDMVMVPFRYEEFIKDLLSLVESGEIPIARIDDAVERILRVKFVAGLFEHPFSDRSLIDV 200

Query: 64  VGCKASFRHL 74
           VGCKASF HL
Sbjct: 201 VGCKASFPHL 210

[Close]

BLAST of Cmc08g0225001 vs. ExPASy TrEMBL
Match: A0A0A0LXK2 (Beta-glucosidase OS=Cucumis sativus OX=3659 GN=Csa_1G528540 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPFRYEEFIKDLLSLVESGEIPI RID+AVERILRVKFVAGLF HP SDRSLI V
Sbjct: 317 IDMVMVPFRYEEFIKDLLSLVESGEIPIARIDDAVERILRVKFVAGLFEHPFSDRSLIDV 376

Query: 64  VGCK 68
           VGCK
Sbjct: 377 VGCK 380

[Close]

BLAST of Cmc08g0225001 vs. ExPASy TrEMBL
Match: A0A1S3C6Q1 (Beta-glucosidase OS=Cucumis melo OX=3656 GN=LOC107990298 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPFRYEEFIKDLLSLVESGEIPI RID+AVERILRVKFVAGLF HP SDRSLI V
Sbjct: 325 IDMVMVPFRYEEFIKDLLSLVESGEIPIARIDDAVERILRVKFVAGLFEHPFSDRSLIDV 384

Query: 64  VGCK 68
           VGCK
Sbjct: 385 VGCK 388

[Close]

BLAST of Cmc08g0225001 vs. TAIR 10
Match: AT3G47040.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-23
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 6   MVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGVVG 65
           MVMVPF+YE+FIKDL  LVESGE+ ++RID+AVERILRVKFVAGLF HPL+DRSL+G VG
Sbjct: 344 MVMVPFKYEQFIKDLTDLVESGEVTMSRIDDAVERILRVKFVAGLFEHPLTDRSLLGTVG 403

Query: 66  CK 68
           CK
Sbjct: 404 CK 405

[Close]

BLAST of Cmc08g0225001 vs. TAIR 10
Match: AT3G47040.2 (Glycosyl hydrolase family protein )

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-23
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 6   MVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGVVG 65
           MVMVPF+YE+FIKDL  LVESGE+ ++RID+AVERILRVKFVAGLF HPL+DRSL+G VG
Sbjct: 352 MVMVPFKYEQFIKDLTDLVESGEVTMSRIDDAVERILRVKFVAGLFEHPLTDRSLLGTVG 411

Query: 66  CK 68
           CK
Sbjct: 412 CK 413

[Close]

BLAST of Cmc08g0225001 vs. TAIR 10
Match: AT3G47000.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 103.6 bits (257), Expect = 7.0e-23
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPF+YE+FI+D+  LVESGEIP+ RI++AVERILRVKFVAGLFGHPL+DRSL+  
Sbjct: 317 IDMVMVPFKYEQFIQDMTDLVESGEIPMARINDAVERILRVKFVAGLFGHPLTDRSLLPT 376

Query: 64  VGCK 68
           VGCK
Sbjct: 377 VGCK 380

[Close]

BLAST of Cmc08g0225001 vs. TAIR 10
Match: AT3G47010.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 103.2 bits (256), Expect = 9.1e-23
Identity = 48/64 (75.00%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPF+YE+FI+D+  LVESGEIP+ R+++AVERILRVKFVAGLF HPL+DRSL+G 
Sbjct: 318 IDMVMVPFKYEQFIQDMTDLVESGEIPMARVNDAVERILRVKFVAGLFEHPLADRSLLGT 377

Query: 64  VGCK 68
           VGCK
Sbjct: 378 VGCK 381

[Close]

BLAST of Cmc08g0225001 vs. TAIR 10
Match: AT3G47010.2 (Glycosyl hydrolase family protein )

HSP 1 Score: 103.2 bits (256), Expect = 9.1e-23
Identity = 48/64 (75.00%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 4   ICMVMVPFRYEEFIKDLLSLVESGEIPITRIDNAVERILRVKFVAGLFGHPLSDRSLIGV 63
           I MVMVPF+YE+FI+D+  LVESGEIP+ R+++AVERILRVKFVAGLF HPL+DRSL+G 
Sbjct: 318 IDMVMVPFKYEQFIQDMTDLVESGEIPMARVNDAVERILRVKFVAGLFEHPLADRSLLGT 377

Query: 64  VGCK 68
           VGCK
Sbjct: 378 VGCK 381

The following BLAST results are available for this feature:

BLAST of Cmc08g0225001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045425.1	3.3e-27	100.00	glycosyl hydrolase family 3 protein [Cucumis melo var. makuwa] >TYK04277.1 glyco...	[more]
TYJ97332.1	1.1e-25	91.43	beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa]	[more]
KAE8653276.1	2.4e-25	88.73	hypothetical protein Csa_023195 [Cucumis sativus]	[more]
KAA0031800.1	7.0e-25	90.00	beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa]	[more]
XP_004150629.2	5.5e-22	90.63	uncharacterized protein LOC101214999 isoform X1 [Cucumis sativus]	[more]

BLAST of Cmc08g0225001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7LXU3	2.2e-05	50.00	Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM...	[more]

BLAST of Cmc08g0225001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXN0	1.6e-27	100.00	Glycosyl hydrolase family 3 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3BBX9	5.2e-26	91.43	Beta-glucosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001...	[more]
A0A5A7SM16	3.4e-25	90.00	Beta-glucosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G004...	[more]
A0A0A0LXK2	2.7e-22	90.63	Beta-glucosidase OS=Cucumis sativus OX=3659 GN=Csa_1G528540 PE=3 SV=1	[more]
A0A1S3C6Q1	2.7e-22	90.63	Beta-glucosidase OS=Cucumis melo OX=3656 GN=LOC107990298 PE=3 SV=1	[more]

BLAST of Cmc08g0225001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47040.1	3.1e-23	79.03	Glycosyl hydrolase family protein	[more]
AT3G47040.2	3.1e-23	79.03	Glycosyl hydrolase family protein	[more]
AT3G47000.1	7.0e-23	76.56	Glycosyl hydrolase family protein	[more]
AT3G47010.1	9.1e-23	75.00	Glycosyl hydrolase family protein	[more]
AT3G47010.2	9.1e-23	75.00	Glycosyl hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036962	Glycoside hydrolase, family 3, N-terminal domain superfamily	GENE3D	3.20.20.300		coord: 4..65 e-value: 2.9E-12 score: 48.4
None	No IPR available	PANTHER	PTHR30620:SF33	BETA-D-GLUCAN EXOHYDROLASE-LIKE PROTEIN	coord: 4..68
None	No IPR available	PANTHER	PTHR30620	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	coord: 4..68
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 6..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0225001.1	Cmc08g0225001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009251	glucan catabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008422	beta-glucosidase activity
molecular_function	GO:0102483	scopolin beta-glucosidase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds