Cmc08g0224991 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224991
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-glucosidase
Location	CMiso1.1chr08: 15504612 .. 15504899 (+)
RNA-Seq Expression	Cmc08g0224991
Synteny	Cmc08g0224991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTGTTTTTGAATACTTTTGTTCTTAATGATCATTATTTCTTTCTTTACCTCAGAAATAATGTAATTGCATGTGCAAAACATTTTGTTGGAGATGGAGGAACTGATAAAGGTTTGAATGAAGGAAATACCATTATTGATTCTTATGATGAATTGGAAAGGATCCATGTGGCTCCTTACTTGGACTTTTTTGCTCAAGGAGTTTCAACTGTTATGACATCTTATTCCAGCTGGAATGGAAATCCCCTTCATGCTCACCATTTTCTACTTACTCAAGTTCTATAA

mRNA sequence

ATGTTTTTGTTTTTGAATACTTTTGTTCTTAATGATCATTATTTCTTTCTTTACCTCAGAAATAATGTAATTGCATGTGCAAAACATTTTGTTGGAGATGGAGGAACTGATAAAGGTTTGAATGAAGGAAATACCATTATTGATTCTTATGATGAATTGGAAAGGATCCATGTGGCTCCTTACTTGGACTTTTTTGCTCAAGGAGTTTCAACTGTTATGACATCTTATTCCAGCTGGAATGGAAATCCCCTTCATGCTCACCATTTTCTACTTACTCAAGTTCTATAA

Coding sequence (CDS)

ATGTTTTTGTTTTTGAATACTTTTGTTCTTAATGATCATTATTTCTTTCTTTACCTCAGAAATAATGTAATTGCATGTGCAAAACATTTTGTTGGAGATGGAGGAACTGATAAAGGTTTGAATGAAGGAAATACCATTATTGATTCTTATGATGAATTGGAAAGGATCCATGTGGCTCCTTACTTGGACTTTTTTGCTCAAGGAGTTTCAACTGTTATGACATCTTATTCCAGCTGGAATGGAAATCCCCTTCATGCTCACCATTTTCTACTTACTCAAGTTCTATAA

Protein sequence

MFLFLNTFVLNDHYFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVMTSYSSWNGNPLHAHHFLLTQVL

Homology

[Close]

BLAST of Cmc08g0224991 vs. NCBI nr
Match: XP_008457398.2 (PREDICTED: beta-glucosidase BoGH3B-like [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIH+APYLD  AQGVSTVM
Sbjct: 204 YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHMAPYLDCIAQGVSTVM 263

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNGNPLHAHHFLLTQVL
Sbjct: 264 ASYSSWNGNPLHAHHFLLTQVL 285

[Close]

BLAST of Cmc08g0224991 vs. NCBI nr
Match: TYJ97332.1 (beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIH+APYLD  AQGVSTVM
Sbjct: 196 YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHMAPYLDCIAQGVSTVM 255

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNGNPLHAHHFLLTQVL
Sbjct: 256 ASYSSWNGNPLHAHHFLLTQVL 277

[Close]

BLAST of Cmc08g0224991 vs. NCBI nr
Match: KAA0031800.1 (beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIH+APYLD  AQGVSTVM
Sbjct: 20  YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHMAPYLDCIAQGVSTVM 79

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNGNPLHAHHFLLTQVL
Sbjct: 80  ASYSSWNGNPLHAHHFLLTQVL 101

[Close]

BLAST of Cmc08g0224991 vs. NCBI nr
Match: XP_004150629.2 (uncharacterized protein LOC101214999 isoform X1 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 4.7e-34
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIH+APYLD  AQG+STVM
Sbjct: 209 YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHIAPYLDCIAQGLSTVM 268

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNGNPLH HHFLLTQVL
Sbjct: 269 ASYSSWNGNPLHTHHFLLTQVL 290

[Close]

BLAST of Cmc08g0224991 vs. NCBI nr
Match: KAE8653276.1 (hypothetical protein Csa_023195 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 4.7e-34
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIH+APYLD  AQG+STVM
Sbjct: 189 YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHIAPYLDCIAQGLSTVM 248

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNGNPLH HHFLLTQVL
Sbjct: 249 ASYSSWNGNPLHTHHFLLTQVL 270

[Close]

BLAST of Cmc08g0224991 vs. ExPASy Swiss-Prot
Match: A7LXU3 (Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) OX=411476 GN=BACOVA_02659 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.2e-05
Identity = 29/74 (39.19%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 22  NVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVMTSYSSWNG 81
           NV AC KH++G G    G +   + I   D  E+ H AP+L    QG  +VM +    NG
Sbjct: 229 NVAACMKHYMGYGVPVSGKDRTPSSISRSDMREK-HFAPFLAAVRQGALSVMVNSGVDNG 288

Query: 82  NPLHAHHFLLTQVL 96
            P HA+  LLT+ L
Sbjct: 289 LPFHANRELLTEWL 301

[Close]

BLAST of Cmc08g0224991 vs. ExPASy Swiss-Prot
Match: T2KMH0 (Beta-xylosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901) OX=1347342 GN=BN863_22130 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-04
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 21  NNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQ-GVSTVMTSYSSW 80
           N+VIA AKHFVG     +G+N G + + S   L  +++ P+     + GV +VM  +  +
Sbjct: 174 NHVIATAKHFVGYPENRRGINGGFSDM-SERRLREVYLPPFEAAVKEAGVGSVMPGHQDF 233

Query: 81  NGNPLHAHHFLLTQVL 96
           NG P H + +LL  +L
Sbjct: 234 NGVPCHMNTWLLKDIL 248

[Close]

BLAST of Cmc08g0224991 vs. ExPASy TrEMBL
Match: A0A5D3BBX9 (Beta-glucosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001380 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.0e-35
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIH+APYLD  AQGVSTVM
Sbjct: 196 YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHMAPYLDCIAQGVSTVM 255

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNGNPLHAHHFLLTQVL
Sbjct: 256 ASYSSWNGNPLHAHHFLLTQVL 277

[Close]

BLAST of Cmc08g0224991 vs. ExPASy TrEMBL
Match: A0A5A7SM16 (Beta-glucosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00430 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.0e-35
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIH+APYLD  AQGVSTVM
Sbjct: 20  YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHMAPYLDCIAQGVSTVM 79

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNGNPLHAHHFLLTQVL
Sbjct: 80  ASYSSWNGNPLHAHHFLLTQVL 101

[Close]

BLAST of Cmc08g0224991 vs. ExPASy TrEMBL
Match: A0A1S3C6Q1 (Beta-glucosidase OS=Cucumis melo OX=3656 GN=LOC107990298 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.0e-35
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIH+APYLD  AQGVSTVM
Sbjct: 204 YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHMAPYLDCIAQGVSTVM 263

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNGNPLHAHHFLLTQVL
Sbjct: 264 ASYSSWNGNPLHAHHFLLTQVL 285

[Close]

BLAST of Cmc08g0224991 vs. ExPASy TrEMBL
Match: A0A0A0LXK2 (Beta-glucosidase OS=Cucumis sativus OX=3659 GN=Csa_1G528540 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.3e-34
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIH+APYLD  AQG+STVM
Sbjct: 196 YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHIAPYLDCIAQGLSTVM 255

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNGNPLH HHFLLTQVL
Sbjct: 256 ASYSSWNGNPLHTHHFLLTQVL 277

[Close]

BLAST of Cmc08g0224991 vs. ExPASy TrEMBL
Match: A0A0A0LV38 (Beta-glucosidase OS=Cucumis sativus OX=3659 GN=Csa_1G528550 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 69/82 (84.15%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNVIACAKHFVGDGGTDKGLNEGNTI  SYDELERIH+APYLD  AQGVSTVM
Sbjct: 195 YPFVAGRNNVIACAKHFVGDGGTDKGLNEGNTIA-SYDELERIHMAPYLDCIAQGVSTVM 254

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNG PLHA HFLLTQ+L
Sbjct: 255 ASYSSWNGRPLHADHFLLTQIL 275

[Close]

BLAST of Cmc08g0224991 vs. TAIR 10
Match: AT3G47040.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 130.6 bits (327), Expect = 6.8e-31
Identity = 61/82 (74.39%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y FL  RNNV+ACAKHFVGDGGTDKG+NEGNTI+ SY+ELE+IH+APYL+  AQGVSTVM
Sbjct: 222 YPFLAGRNNVVACAKHFVGDGGTDKGINEGNTIV-SYEELEKIHLAPYLNCLAQGVSTVM 281

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNG+ LH+ +FLLT++L
Sbjct: 282 ASYSSWNGSKLHSDYFLLTELL 302

[Close]

BLAST of Cmc08g0224991 vs. TAIR 10
Match: AT3G47040.2 (Glycosyl hydrolase family protein )

HSP 1 Score: 130.6 bits (327), Expect = 6.8e-31
Identity = 61/82 (74.39%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y FL  RNNV+ACAKHFVGDGGTDKG+NEGNTI+ SY+ELE+IH+APYL+  AQGVSTVM
Sbjct: 230 YPFLAGRNNVVACAKHFVGDGGTDKGINEGNTIV-SYEELEKIHLAPYLNCLAQGVSTVM 289

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNG+ LH+ +FLLT++L
Sbjct: 290 ASYSSWNGSKLHSDYFLLTELL 310

[Close]

BLAST of Cmc08g0224991 vs. TAIR 10
Match: AT3G47010.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-29
Identity = 61/82 (74.39%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y FL  RNNVIACAKHFVGDGGT+KGL+EGNT I SY++LE+IHVAPYL+  AQGVSTVM
Sbjct: 198 YPFLAGRNNVIACAKHFVGDGGTEKGLSEGNT-ITSYEDLEKIHVAPYLNCIAQGVSTVM 257

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            S+SSWNG+ LH+ +FLLT+VL
Sbjct: 258 ASFSSWNGSRLHSDYFLLTEVL 278

[Close]

BLAST of Cmc08g0224991 vs. TAIR 10
Match: AT3G47010.2 (Glycosyl hydrolase family protein )

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-29
Identity = 61/82 (74.39%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y FL  RNNVIACAKHFVGDGGT+KGL+EGNT I SY++LE+IHVAPYL+  AQGVSTVM
Sbjct: 198 YPFLAGRNNVIACAKHFVGDGGTEKGLSEGNT-ITSYEDLEKIHVAPYLNCIAQGVSTVM 257

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            S+SSWNG+ LH+ +FLLT+VL
Sbjct: 258 ASFSSWNGSRLHSDYFLLTEVL 278

[Close]

BLAST of Cmc08g0224991 vs. TAIR 10
Match: AT3G47000.1 (Glycosyl hydrolase family protein )

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-29
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 14  YFFLYLRNNVIACAKHFVGDGGTDKGLNEGNTIIDSYDELERIHVAPYLDFFAQGVSTVM 73
           Y F+  RNNV+AC KHFVGDGGTDKG+NEGNTI  SY+ELE+IH+ PYL   AQGVSTVM
Sbjct: 197 YPFVAGRNNVVACVKHFVGDGGTDKGINEGNTIA-SYEELEKIHIPPYLKCLAQGVSTVM 256

Query: 74  TSYSSWNGNPLHAHHFLLTQVL 96
            SYSSWNG  LHA  FLLT++L
Sbjct: 257 ASYSSWNGTRLHADRFLLTEIL 277

The following BLAST results are available for this feature:

BLAST of Cmc08g0224991 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457398.2	1.2e-34	90.24	PREDICTED: beta-glucosidase BoGH3B-like [Cucumis melo]	[more]
TYJ97332.1	1.2e-34	90.24	beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa]	[more]
KAA0031800.1	1.2e-34	90.24	beta-glucosidase BoGH3B-like [Cucumis melo var. makuwa]	[more]
XP_004150629.2	4.7e-34	87.80	uncharacterized protein LOC101214999 isoform X1 [Cucumis sativus]	[more]
KAE8653276.1	4.7e-34	87.80	hypothetical protein Csa_023195 [Cucumis sativus]	[more]

BLAST of Cmc08g0224991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7LXU3	2.2e-05	39.19	Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM...	[more]
T2KMH0	1.4e-04	35.53	Beta-xylosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005...	[more]

BLAST of Cmc08g0224991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BBX9	6.0e-35	90.24	Beta-glucosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001...	[more]
A0A5A7SM16	6.0e-35	90.24	Beta-glucosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G004...	[more]
A0A1S3C6Q1	6.0e-35	90.24	Beta-glucosidase OS=Cucumis melo OX=3656 GN=LOC107990298 PE=3 SV=1	[more]
A0A0A0LXK2	2.3e-34	87.80	Beta-glucosidase OS=Cucumis sativus OX=3659 GN=Csa_1G528540 PE=3 SV=1	[more]
A0A0A0LV38	1.5e-30	84.15	Beta-glucosidase OS=Cucumis sativus OX=3659 GN=Csa_1G528550 PE=3 SV=1	[more]

BLAST of Cmc08g0224991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47040.1	6.8e-31	74.39	Glycosyl hydrolase family protein	[more]
AT3G47040.2	6.8e-31	74.39	Glycosyl hydrolase family protein	[more]
AT3G47010.1	2.2e-29	74.39	Glycosyl hydrolase family protein	[more]
AT3G47010.2	2.2e-29	74.39	Glycosyl hydrolase family protein	[more]
AT3G47000.1	3.7e-29	71.95	Glycosyl hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001764	Glycoside hydrolase, family 3, N-terminal	PFAM	PF00933	Glyco_hydro_3	coord: 21..95 e-value: 2.9E-14 score: 53.3
IPR036962	Glycoside hydrolase, family 3, N-terminal domain superfamily	GENE3D	3.20.20.300		coord: 13..95 e-value: 1.1E-21 score: 79.2
None	No IPR available	PANTHER	PTHR30620:SF92	BETA-GLUCOSIDASE BOGH3B-LIKE	coord: 13..95
None	No IPR available	PANTHER	PTHR30620	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	coord: 13..95
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 19..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224991.1	Cmc08g0224991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009251	glucan catabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008422	beta-glucosidase activity
molecular_function	GO:0102483	scopolin beta-glucosidase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds