Cmc08g0224351 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224351
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 14334071 .. 14334760 (+)
RNA-Seq Expression	Cmc08g0224351
Synteny	Cmc08g0224351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTATGTATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAATATTCTCTAAGATCGACCTTCGGTCGAGATATCATCAGCTGAGGATTAAGAATAGGGATTTACCGAAGACAGCCTTTTATTCCAGATATGGATATAATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGAGTTCCTGGACACTTTTGTGATCGTGTTTATTGATGATATTTTGACATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTAGAGACAATAAATTGTATGCAAAGTTCTCGAAATCTGAGTTTTGGTTGATGGAGGTATCCTTTCTAGGCCATGTGGTTTCTAAGGCTAGAGTTTCTGTGGATCCAGCTAAGATAGAGGGAGTCACCAGTTGGCCCCAACCTTCCACGGTCAGTGAGGTTCATAGCTTTCTTGGTTTAGTAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTCCTCAGTTGACCAGGAAGGGAGATCCTTTTGTTTGGAGAAAGGCACGTGAGGACAGTTTCCAGAACCTTAAATAG

mRNA sequence

ATGCGCCTATGTATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAATATTCTCTAAGATCGACCTTCGGTCGAGATATCATCAGCTGAGGATTAAGAATAGGGATTTACCGAAGACAGCCTTTTATTCCAGATATGGATATAATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGAGTTCCTGGACACTTTTGTGATCGTGTTTATTGATGATATTTTGACATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTAGAGACAATAAATTGTATGCAAAGTTCTCGAAATCTGAGTTTTGGTTGATGGAGGTATCCTTTCTAGGCCATGTGGTTTCTAAGGCTAGAGTTTCTGTGGATCCAGCTAAGATAGAGGGAGTCACCAGTTGGCCCCAACCTTCCACGGTCAGTGAGGTTCATAGCTTTCTTGGTTTAGTAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTCCTCAGTTGACCAGGAAGGGAGATCCTTTTGTTTGGAGAAAGGCACGTGAGGACAGTTTCCAGAACCTTAAATAG

Coding sequence (CDS)

ATGCGCCTATGTATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAATATTCTCTAAGATCGACCTTCGGTCGAGATATCATCAGCTGAGGATTAAGAATAGGGATTTACCGAAGACAGCCTTTTATTCCAGATATGGATATAATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGAGTTCCTGGACACTTTTGTGATCGTGTTTATTGATGATATTTTGACATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTACAAACCCTTAGAGACAATAAATTGTATGCAAAGTTCTCGAAATCTGAGTTTTGGTTGATGGAGGTATCCTTTCTAGGCCATGTGGTTTCTAAGGCTAGAGTTTCTGTGGATCCAGCTAAGATAGAGGGAGTCACCAGTTGGCCCCAACCTTCCACGGTCAGTGAGGTTCATAGCTTTCTTGGTTTAGTAGGTTATTATCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTCCTCAGTTGACCAGGAAGGGAGATCCTTTTGTTTGGAGAAAGGCACGTGAGGACAGTTTCCAGAACCTTAAATAG

Protein sequence

MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAFYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEVHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK

Homology

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BLAST of Cmc08g0224351 vs. NCBI nr
Match: KAA0033210.1 (pol protein [Cucumis melo var. makuwa] >TYK07510.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 450.7 bits (1158), Expect = 7.7e-123
Identity = 221/222 (99.55%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH
Sbjct: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKARE 223
           VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAR+
Sbjct: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKARK 222

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BLAST of Cmc08g0224351 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 414.5 bits (1064), Expect = 6.1e-112
Identity = 206/229 (89.96%), Postives = 212/229 (92.58%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIKN D+PKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           F SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFIDDIL YSKTEAEHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VTSW +PSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
           V SFLGL GYYRRFVENFSRIATPL QLTRKG PFVW KA EDSFQNLK
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 229

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BLAST of Cmc08g0224351 vs. NCBI nr
Match: KAA0062265.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.4e-111
Identity = 205/229 (89.52%), Postives = 211/229 (92.14%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIK+ D+PKTA
Sbjct: 494 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 553

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           F SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFIDDIL YSKTEAEHEEH
Sbjct: 554 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 613

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VT W QPSTVSE
Sbjct: 614 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSE 673

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
           V SFLGL GYYRRFVENFSRIATPL QLTRKG PFVW KA EDSFQNLK
Sbjct: 674 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 722

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BLAST of Cmc08g0224351 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 411.8 bits (1057), Expect = 4.0e-111
Identity = 204/229 (89.08%), Postives = 211/229 (92.14%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIK+ D+PKTA
Sbjct: 622 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 681

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           F SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFIDDIL YSKTEAEHEEH
Sbjct: 682 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 741

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VT W +PSTVSE
Sbjct: 742 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 801

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
           V SFLGL GYYRRFVENFSRIATPL QLTRKG PFVW KA EDSFQNLK
Sbjct: 802 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 850

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BLAST of Cmc08g0224351 vs. NCBI nr
Match: KAA0051357.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 411.8 bits (1057), Expect = 4.0e-111
Identity = 204/229 (89.08%), Postives = 212/229 (92.58%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS Y+QLRIK+ D+PKTA
Sbjct: 612 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYNQLRIKDEDVPKTA 671

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           F SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFIDDIL YSKTEAEHEEH
Sbjct: 672 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 731

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKARVSVDPAKIE VT W +PSTVSE
Sbjct: 732 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKARVSVDPAKIEAVTGWTRPSTVSE 791

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
           V SFLGL GYYRRFVENFSRIATPL QLTRKG PFVW KA EDSFQNLK
Sbjct: 792 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 840

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BLAST of Cmc08g0224351 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.8e-43
Identity = 81/229 (35.37%), Postives = 137/229 (59.83%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAF 61
           R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL   +HQ+ +    + KTAF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  YSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEHL 121
            ++ G+ E++ M FGL NAP  F   MN + +  L+   +V++DDI+ +S +  EH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 RMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEV 181
           ++V   L D  L  +  K EF   E +FLGH+V+   +  +P K++ + S+P P+   E+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEI 441

Query: 182 HSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKARE-DSFQNLK 230
            +FLGL GYYR+F+ N++ IA P+    +K      +K    ++F+ LK
Sbjct: 442 RAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLK 490

[Close]

BLAST of Cmc08g0224351 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-42
Identity = 89/228 (39.04%), Postives = 135/228 (59.21%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAF 61
           RLC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DL S YHQ+ ++ +D  KTAF
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  YSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEHL 121
            +  G  E+ VM FGL NAP+ F   M   F++    FV V++DDIL +S++  EH +HL
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 792

Query: 122 RMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEV 181
             VL+ L++  L  K  K +F   E  FLG+ +   +++    K   +  +P P TV + 
Sbjct: 793 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQA 852

Query: 182 HSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
             FLG++ YYRRF+ N S+IA P+       D   W + ++ + + LK
Sbjct: 853 QRFLGMINYYRRFIPNCSKIAQPIQLFI--CDKSQWTEKQDKAIEKLK 896

[Close]

BLAST of Cmc08g0224351 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-42
Identity = 89/228 (39.04%), Postives = 134/228 (58.77%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAF 61
           RLC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DL S YHQ+ ++ +D  KTAF
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  YSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEHL 121
            +  G  E+ VM FGL NAP+ F   M   F++    FV V++DDIL +S++  EH +HL
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 766

Query: 122 RMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEV 181
             VL+ L++  L  K  K +F   E  FLG+ +   +++    K   +  +P P TV + 
Sbjct: 767 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQA 826

Query: 182 HSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
             FLG++ YYRRF+ N S+IA P+       D   W + ++ +   LK
Sbjct: 827 QRFLGMINYYRRFIPNCSKIAQPIQLFI--CDKSQWTEKQDKAIDKLK 870

[Close]

BLAST of Cmc08g0224351 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.4e-42
Identity = 84/229 (36.68%), Postives = 136/229 (59.39%), Query Frame = 0


Query: 2   RLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTAF 61
           R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL   +HQ+ +    + KTAF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  YSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEHL 121
            +++G+ E++ M FGL NAP  F   MN + +  L+   +V++DDI+ +S +  EH + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 RMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSEV 181
            +V + L    L  +  K EF   E +FLGHV++   +  +P KIE +  +P P+   E+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442

Query: 182 HSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDS-FQNLK 230
            +FLGL GYYR+F+ NF+ IA P+ +  +K           DS F+ LK
Sbjct: 443 KAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLK 491

[Close]

BLAST of Cmc08g0224351 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.9e-42
Identity = 83/229 (36.24%), Postives = 136/229 (59.39%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           +R+ +DY+ LNK    N YPLP I+ L  ++QG+TIF+K+DL+S YH +R++  D  K A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           F    G  E++VM +G++ AP  F   +N +  E  ++ V+ ++DDIL +SK+E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           ++ VLQ L++  L    +K EF   +V F+G+ +S+   +     I+ V  W QP    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
           +  FLG V Y R+F+   S++  PL  L +K   + W   +  + +N+K
Sbjct: 642 LRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIK 690

[Close]

BLAST of Cmc08g0224351 vs. ExPASy TrEMBL
Match: A0A5D3C850 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00280 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 3.7e-123
Identity = 221/222 (99.55%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH
Sbjct: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKARE 223
           VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAR+
Sbjct: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKARK 222

[Close]

BLAST of Cmc08g0224351 vs. ExPASy TrEMBL
Match: A0A5A7TLA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 3.0e-112
Identity = 206/229 (89.96%), Postives = 212/229 (92.58%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIKN D+PKTA
Sbjct: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKNGDVPKTA 60

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           F SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFIDDIL YSKTEAEHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VTSW +PSTVSE
Sbjct: 121 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSE 180

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
           V SFLGL GYYRRFVENFSRIATPL QLTRKG PFVW KA EDSFQNLK
Sbjct: 181 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 229

[Close]

BLAST of Cmc08g0224351 vs. ExPASy TrEMBL
Match: A0A5A7V8N8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00350 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.6e-112
Identity = 205/229 (89.52%), Postives = 211/229 (92.14%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIK+ D+PKTA
Sbjct: 494 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 553

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           F SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFIDDIL YSKTEAEHEEH
Sbjct: 554 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 613

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VT W QPSTVSE
Sbjct: 614 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSE 673

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
           V SFLGL GYYRRFVENFSRIATPL QLTRKG PFVW KA EDSFQNLK
Sbjct: 674 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 722

[Close]

BLAST of Cmc08g0224351 vs. ExPASy TrEMBL
Match: A0A5A7UAA8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00800 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.9e-111
Identity = 204/229 (89.08%), Postives = 212/229 (92.58%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS Y+QLRIK+ D+PKTA
Sbjct: 612 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYNQLRIKDEDVPKTA 671

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           F SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFIDDIL YSKTEAEHEEH
Sbjct: 672 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 731

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKARVSVDPAKIE VT W +PSTVSE
Sbjct: 732 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKARVSVDPAKIEAVTGWTRPSTVSE 791

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
           V SFLGL GYYRRFVENFSRIATPL QLTRKG PFVW KA EDSFQNLK
Sbjct: 792 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 840

[Close]

BLAST of Cmc08g0224351 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.9e-111
Identity = 204/229 (89.08%), Postives = 211/229 (92.14%), Query Frame = 0


Query: 1   MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSRYHQLRIKNRDLPKTA 60
           MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLRS YHQLRIK+ D+PKTA
Sbjct: 622 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA 681

Query: 61  FYSRYGYNEFIVMSFGLTNAPTVFMDLMNRVFKEFLDTFVIVFIDDILTYSKTEAEHEEH 120
           F SRYG+ EFIVMSFGLTNAP VFMDLMNRVF+EFLDTFVIVFIDDIL YSKTEAEHEEH
Sbjct: 682 FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEH 741

Query: 121 LRMVLQTLRDNKLYAKFSKSEFWLMEVSFLGHVVSKARVSVDPAKIEGVTSWPQPSTVSE 180
           LRMVLQTLRDNKLYAKFSK EFWL +VSFLGHVVSKA VSVDPAKIE VT W +PSTVSE
Sbjct: 742 LRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSE 801

Query: 181 VHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
           V SFLGL GYYRRFVENFSRIATPL QLTRKG PFVW KA EDSFQNLK
Sbjct: 802 VRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 850

[Close]

BLAST of Cmc08g0224351 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 5.9e-20
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 120 HLRMVLQTLRDNKLYAKFSKSEFWLMEVSFLG--HVVSKARVSVDPAKIEGVTSWPQPST 179
           HL MVLQ    ++ YA   K  F   ++++LG  H++S   VS DPAK+E +  WP+P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEVHSFLGLVGYYRRFVENFSRIATPLPQLTRKGDPFVWRKAREDSFQNLK 230
            +E+  FLGL GYYRRFV+N+ +I  PL +L +K +   W +    +F+ LK
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWTEMAALAFKALK 113

The following BLAST results are available for this feature:

BLAST of Cmc08g0224351 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033210.1	7.7e-123	99.55	pol protein [Cucumis melo var. makuwa] >TYK07510.1 pol protein [Cucumis melo var...	[more]
KAA0042119.1	6.1e-112	89.96	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062265.1	1.4e-111	89.52	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	4.0e-111	89.08	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051357.1	4.0e-111	89.08	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0224351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	4.8e-43	35.37	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q7LHG5	1.1e-42	39.04	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	1.8e-42	39.04	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	2.4e-42	36.68	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P0CT41	6.9e-42	36.24	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc08g0224351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C850	3.7e-123	99.55	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00280 P...	[more]
A0A5A7TLA3	3.0e-112	89.96	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005990 PE...	[more]
A0A5A7V8N8	6.6e-112	89.52	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UAA8	1.9e-111	89.08	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7U330	1.9e-111	89.08	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]

BLAST of Cmc08g0224351 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.9e-20	41.07	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 164..229 e-value: 7.3E-22 score: 79.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 7.3E-62 score: 210.4
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 7.3E-62 score: 210.4
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..228
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..228
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..154 e-value: 1.34888E-72 score: 216.693
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..153 e-value: 5.8E-22 score: 78.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..154 score: 10.208052
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224351.1	Cmc08g0224351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding