Cmc08g0224281 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0224281
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 14166875 .. 14167624 (+)
RNA-Seq Expression	Cmc08g0224281
Synteny	Cmc08g0224281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAAGCCGCTGTGTCAGTAGGCAAGTTGGAAAGTTTAGTTGCACATTTCCAAGTGCGACCTTTTTTGATAGACCGTATTATTAAAGCCCAGCTAGATGATGCAAGACTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTGATGAAATGTGATAGGTTGTGTGTACCCAGTGACCAAACGATAAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAGTGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATAAAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGGACTCCTAAATCCTCTTCCAGTACCGGAATGGAAATGGGAGCATGTTACCATGGACTTTCATTTGGGACTACCCCGCACAACGAATGGGAATGATGGCATTTGGGTGATAGTTGACAGACTTACGAAGACAGCAAGATTTCTACCAGTCAAGGTCACTTTCACTTTGGATAAGCTGGCCAAATTGTATGTTGATAAAATTGTGAGTGCGTATGGAGCCCCAATATCTATTGTGTCTGATCGAGACTCCAAGTTTACCTCAAAGTTTTGGCCAAGTTTACAACAAGCCTTAGGTACCAAGTTACATTTTAGTACCGCATTTCATCCTCAGATAGATGGCCAGTAA

mRNA sequence

ATGGGTGAAGCCGCTGTGTCAGTAGGCAAGTTGGAAAGTTTAGTTGCACATTTCCAAGTGCGACCTTTTTTGATAGACCGTATTATTAAAGCCCAGCTAGATGATGCAAGACTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTGATGAAATGTGATAGGTTGTGTGTACCCAGTGACCAAACGATAAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAGTGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATAAAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGGACTCCTAAATCCTCTTCCAGTACCGGAATGGAAATGGGAGCATGTTACCATGGACTTTCATTTGGGACTACCCCGCACAACGAATGGGAATGATGGCATTTGGGTGATAGTTGACAGACTTACGAAGACAGCAAGATTTCTACCAGTCAAGGTCACTTTCACTTTGGATAAGCTGGCCAAATTGTATGTTGATAAAATTGTGAGTGCGTATGGAGCCCCAATATCTATTGTGTCTGATCGAGACTCCAAGTTTACCTCAAAGTTTTGGCCAAGTTTACAACAAGCCTTAGGTACCAAGTTACATTTTAGTACCGCATTTCATCCTCAGATAGATGGCCAGTAA

Coding sequence (CDS)

ATGGGTGAAGCCGCTGTGTCAGTAGGCAAGTTGGAAAGTTTAGTTGCACATTTCCAAGTGCGACCTTTTTTGATAGACCGTATTATTAAAGCCCAGCTAGATGATGCAAGACTGAGGAAGTTAGCAGAAGAGGTAAGACAAAACCAAAGATTGAATTATAGCTTGAGGGGTGATGGTGCCTTGATGAAATGTGATAGGTTGTGTGTACCCAGTGACCAAACGATAAAAGATCAAATTTTAGAGGAAGCACATAGTTCTGCATATGCAATGCATCCTGGTAGTACGAAAGTGTATAGAACTTTGAAGAAACACTATTGGTGGCCAGGTATAAAGCGTGAGATTGCAGATTATGTGGCTAAGTGTTTGATATGTCAGCAAGTTAAACCTGAACGTCAGAGACCAGCGGGACTCCTAAATCCTCTTCCAGTACCGGAATGGAAATGGGAGCATGTTACCATGGACTTTCATTTGGGACTACCCCGCACAACGAATGGGAATGATGGCATTTGGGTGATAGTTGACAGACTTACGAAGACAGCAAGATTTCTACCAGTCAAGGTCACTTTCACTTTGGATAAGCTGGCCAAATTGTATGTTGATAAAATTGTGAGTGCGTATGGAGCCCCAATATCTATTGTGTCTGATCGAGACTCCAAGTTTACCTCAAAGTTTTGGCCAAGTTTACAACAAGCCTTAGGTACCAAGTTACATTTTAGTACCGCATTTCATCCTCAGATAGATGGCCAGTAA

Protein sequence

MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ

Homology

[Close]

BLAST of Cmc08g0224281 vs. NCBI nr
Match: KAA0056222.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04055.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 477.2 bits (1227), Expect = 8.4e-131
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA
Sbjct: 298 MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 357

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK
Sbjct: 358 LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 417

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
           CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA
Sbjct: 418 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 477

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL 233
           RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL
Sbjct: 478 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL 529

[Close]

BLAST of Cmc08g0224281 vs. NCBI nr
Match: KAA0036812.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95880.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 451.4 bits (1160), Expect = 4.9e-123
Identity = 221/249 (88.76%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           MGE AVSVGKL SL+AHFQV+P LIDRIIK QLDDA LRKLAE+VRQNQR NYSLRG GA
Sbjct: 1   MGEVAVSVGKLGSLIAHFQVQPILIDRIIKVQLDDAMLRKLAEKVRQNQRFNYSLRGHGA 60

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMK DRLCVPSDQ IKDQILEEAHS AYA HPGSTK+YRTLKKHYWWPG+K EIADYVAK
Sbjct: 61  LMKYDRLCVPSDQGIKDQILEEAHSFAYATHPGSTKMYRTLKKHYWWPGMKHEIADYVAK 120

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
           CLICQQVKPERQRPAGLLNPLPVPEWK EHVTMDF  GLP TTNG+DGIWVIVDRLTKTA
Sbjct: 121 CLICQQVKPERQRPAGLLNPLPVPEWKREHVTMDFLFGLPHTTNGHDGIWVIVDRLTKTA 180

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFST 240
           RFL VKVTFTLDKLAKLYVDKIVSAYGA ISIVS+RDS+FTSKFWPSLQQALGTKLHFST
Sbjct: 181 RFLLVKVTFTLDKLAKLYVDKIVSAYGATISIVSNRDSRFTSKFWPSLQQALGTKLHFST 240

Query: 241 AFHPQIDGQ 250
           AFHP+ DGQ
Sbjct: 241 AFHPRTDGQ 249

[Close]

BLAST of Cmc08g0224281 vs. NCBI nr
Match: KAA0042141.1 (hypothetical protein E6C27_scaffold67G006300 [Cucumis melo var. makuwa])

HSP 1 Score: 397.5 bits (1020), Expect = 8.4e-107
Identity = 203/249 (81.53%), Postives = 207/249 (83.13%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           MGE A+SVGKL SLVAHFQVRP LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA
Sbjct: 541 MGEVAMSVGKLGSLVAHFQVRPILIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 600

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMK DRLCVPSDQTIKDQI EEAHSSAYAMHPGSTKVYRTLKKHYWWPG+KREIADY   
Sbjct: 601 LMKYDRLCVPSDQTIKDQISEEAHSSAYAMHPGSTKVYRTLKKHYWWPGMKREIADY--- 660

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
                                       EHVTMDF  GLPRTTNGNDGIWVIVDRLTKTA
Sbjct: 661 ----------------------------EHVTMDFLFGLPRTTNGNDGIWVIVDRLTKTA 720

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFST 240
           RFLPVK+TFTLDKLAKLYVDKIVSAYGAPISIV DRD +FTSKFWPSLQQALGTKLHFST
Sbjct: 721 RFLPVKLTFTLDKLAKLYVDKIVSAYGAPISIVFDRDFRFTSKFWPSLQQALGTKLHFST 758

Query: 241 AFHPQIDGQ 250
            FHPQ DGQ
Sbjct: 781 TFHPQTDGQ 758

[Close]

BLAST of Cmc08g0224281 vs. NCBI nr
Match: TYK18080.1 (hypothetical protein E5676_scaffold306G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 396.0 bits (1016), Expect = 2.4e-106
Identity = 202/249 (81.12%), Postives = 207/249 (83.13%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           MGE A+SVGKL SLVAHFQVRP LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA
Sbjct: 541 MGEVAMSVGKLGSLVAHFQVRPILIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 600

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMK DRLCVPSDQTIKDQI EEAHSSAYAMHPGSTKVYRTLKKHYWWPG+KREIADY   
Sbjct: 601 LMKYDRLCVPSDQTIKDQISEEAHSSAYAMHPGSTKVYRTLKKHYWWPGMKREIADY--- 660

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
                                       EHVTMDF  GLPRTTNGNDGIWVIVDRLTKTA
Sbjct: 661 ----------------------------EHVTMDFLFGLPRTTNGNDGIWVIVDRLTKTA 720

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFST 240
           RFLPVK+TFTLDKLAKLYVDKIVSAYGAPISIV D+D +FTSKFWPSLQQALGTKLHFST
Sbjct: 721 RFLPVKLTFTLDKLAKLYVDKIVSAYGAPISIVFDQDFRFTSKFWPSLQQALGTKLHFST 758

Query: 241 AFHPQIDGQ 250
            FHPQ DGQ
Sbjct: 781 TFHPQTDGQ 758

[Close]

BLAST of Cmc08g0224281 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 379.0 bits (972), Expect = 3.1e-101
Identity = 195/249 (78.31%), Postives = 202/249 (81.12%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           M EAAVSVGKL SL+AHFQV+P LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSL+ D A
Sbjct: 700 MDEAAVSVGKLGSLIAHFQVQPILIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLKDDVA 759

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMK DRLCVPSDQTIKDQIL+EAHSSAYAMHPGSTKVY TLKKHYWW G+KREIADYVAK
Sbjct: 760 LMKYDRLCVPSDQTIKDQILKEAHSSAYAMHPGSTKVYITLKKHYWWLGMKREIADYVAK 819

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
           CLICQQVKPERQRPAGLLNPLPV EWKWEH                              
Sbjct: 820 CLICQQVKPERQRPAGLLNPLPVLEWKWEH------------------------------ 879

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFST 240
                 VTFTLDK AKLYVDKIVSAYGAP+SIVSDRDS+FTSKFWPSLQQALGTKLHFST
Sbjct: 880 ------VTFTLDKQAKLYVDKIVSAYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFST 912

Query: 241 AFHPQIDGQ 250
           AFHPQ DGQ
Sbjct: 940 AFHPQKDGQ 912

[Close]

BLAST of Cmc08g0224281 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-30
Identity = 78/206 (37.86%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 44   EVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKK 103
            E+ +  R NYSL  D  +   DRL VP  Q      L   H + +  H G T     +  
Sbjct: 1067 ELSETFRKNYSLE-DEMIYYQDRLVVPIKQQNAVMRLYHDH-TLFGGHFGVTVTLAKISP 1126

Query: 104  HYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTT 163
             Y+WP ++  I  Y+  C+ CQ +K  R R  GLL PLP+ E +W  ++MDF  GLP T+
Sbjct: 1127 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 1186

Query: 164  NGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSK 223
            N  + I V+VDR +K A F+  + T    +L  L    I S +G P +I SDRD + T+ 
Sbjct: 1187 NNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTAD 1246

Query: 224  FWPSLQQALGTKLHFSTAFHPQIDGQ 250
             +  L + LG K   S+A HPQ DGQ
Sbjct: 1247 KYQELTKRLGIKSTMSSANHPQTDGQ 1270

[Close]

BLAST of Cmc08g0224281 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-30
Identity = 78/206 (37.86%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 44   EVRQNQRLNYSLRGDGALMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKK 103
            E+ +  R NYSL  D  +   DRL VP  Q      L   H + +  H G T     +  
Sbjct: 1093 ELSETFRKNYSLE-DEMIYYQDRLVVPIKQQNAVMRLYHDH-TLFGGHFGVTVTLAKISP 1152

Query: 104  HYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTT 163
             Y+WP ++  I  Y+  C+ CQ +K  R R  GLL PLP+ E +W  ++MDF  GLP T+
Sbjct: 1153 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 1212

Query: 164  NGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSK 223
            N  + I V+VDR +K A F+  + T    +L  L    I S +G P +I SDRD + T+ 
Sbjct: 1213 NNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTAD 1272

Query: 224  FWPSLQQALGTKLHFSTAFHPQIDGQ 250
             +  L + LG K   S+A HPQ DGQ
Sbjct: 1273 KYQELTKRLGIKSTMSSANHPQTDGQ 1296

[Close]

BLAST of Cmc08g0224281 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 65/225 (28.89%), Postives = 119/225 (52.89%), Query Frame = 0


Query: 26   DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAH 85
            ++++    +D +L  L     +    N  L+ DG L+   D++ +P+D  +   I+++ H
Sbjct: 862  NQVVTEYTNDTKLLNLLNNEDKRVEENIQLK-DGLLINSKDQILLPNDTQLTRTIIKKYH 921

Query: 86   SSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVP 145
                 +HPG   +   + + + W GI+++I +YV  C  CQ  K    +P G L P+P  
Sbjct: 922  EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 981

Query: 146  EWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVS 205
            E  WE ++MDF   LP  ++G + ++V+VDR +K A  +P   + T ++ A+++  ++++
Sbjct: 982  ERPWESLSMDFITALPE-SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIA 1041

Query: 206  AYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ 250
             +G P  I++D D  FTS+ W          + FS  + PQ DGQ
Sbjct: 1042 YFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQ 1084

[Close]

BLAST of Cmc08g0224281 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 65/225 (28.89%), Postives = 119/225 (52.89%), Query Frame = 0


Query: 26   DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAH 85
            ++++    +D +L  L     +    N  L+ DG L+   D++ +P+D  +   I+++ H
Sbjct: 862  NQVVTEYTNDTKLLNLLNNEDKRVEENIQLK-DGLLINSKDQILLPNDTQLTRTIIKKYH 921

Query: 86   SSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVP 145
                 +HPG   +   + + + W GI+++I +YV  C  CQ  K    +P G L P+P  
Sbjct: 922  EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 981

Query: 146  EWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVS 205
            E  WE ++MDF   LP  ++G + ++V+VDR +K A  +P   + T ++ A+++  ++++
Sbjct: 982  ERPWESLSMDFITALPE-SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIA 1041

Query: 206  AYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ 250
             +G P  I++D D  FTS+ W          + FS  + PQ DGQ
Sbjct: 1042 YFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQ 1084

[Close]

BLAST of Cmc08g0224281 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 65/225 (28.89%), Postives = 119/225 (52.89%), Query Frame = 0


Query: 26   DRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGALMKC-DRLCVPSDQTIKDQILEEAH 85
            ++++    +D +L  L     +    N  L+ DG L+   D++ +P+D  +   I+++ H
Sbjct: 862  NQVVTEYTNDTKLLNLLNNEDKRVEENIQLK-DGLLINSKDQILLPNDTQLTRTIIKKYH 921

Query: 86   SSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAKCLICQQVKPERQRPAGLLNPLPVP 145
                 +HPG   +   + + + W GI+++I +YV  C  CQ  K    +P G L P+P  
Sbjct: 922  EEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 981

Query: 146  EWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTARFLPVKVTFTLDKLAKLYVDKIVS 205
            E  WE ++MDF   LP  ++G + ++V+VDR +K A  +P   + T ++ A+++  ++++
Sbjct: 982  ERPWESLSMDFITALPE-SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIA 1041

Query: 206  AYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFSTAFHPQIDGQ 250
             +G P  I++D D  FTS+ W          + FS  + PQ DGQ
Sbjct: 1042 YFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQ 1084

[Close]

BLAST of Cmc08g0224281 vs. ExPASy TrEMBL
Match: A0A5A7UK27 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold460G00120 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 4.0e-131
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA
Sbjct: 298 MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 357

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK
Sbjct: 358 LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 417

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
           CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA
Sbjct: 418 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 477

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL 233
           RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL
Sbjct: 478 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQAL 529

[Close]

BLAST of Cmc08g0224281 vs. ExPASy TrEMBL
Match: A0A5A7T060 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001750 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 2.4e-123
Identity = 221/249 (88.76%), Postives = 230/249 (92.37%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           MGE AVSVGKL SL+AHFQV+P LIDRIIK QLDDA LRKLAE+VRQNQR NYSLRG GA
Sbjct: 1   MGEVAVSVGKLGSLIAHFQVQPILIDRIIKVQLDDAMLRKLAEKVRQNQRFNYSLRGHGA 60

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMK DRLCVPSDQ IKDQILEEAHS AYA HPGSTK+YRTLKKHYWWPG+K EIADYVAK
Sbjct: 61  LMKYDRLCVPSDQGIKDQILEEAHSFAYATHPGSTKMYRTLKKHYWWPGMKHEIADYVAK 120

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
           CLICQQVKPERQRPAGLLNPLPVPEWK EHVTMDF  GLP TTNG+DGIWVIVDRLTKTA
Sbjct: 121 CLICQQVKPERQRPAGLLNPLPVPEWKREHVTMDFLFGLPHTTNGHDGIWVIVDRLTKTA 180

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFST 240
           RFL VKVTFTLDKLAKLYVDKIVSAYGA ISIVS+RDS+FTSKFWPSLQQALGTKLHFST
Sbjct: 181 RFLLVKVTFTLDKLAKLYVDKIVSAYGATISIVSNRDSRFTSKFWPSLQQALGTKLHFST 240

Query: 241 AFHPQIDGQ 250
           AFHP+ DGQ
Sbjct: 241 AFHPRTDGQ 249

[Close]

BLAST of Cmc08g0224281 vs. ExPASy TrEMBL
Match: A0A5A7TKQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006300 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 4.1e-107
Identity = 203/249 (81.53%), Postives = 207/249 (83.13%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           MGE A+SVGKL SLVAHFQVRP LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA
Sbjct: 541 MGEVAMSVGKLGSLVAHFQVRPILIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 600

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMK DRLCVPSDQTIKDQI EEAHSSAYAMHPGSTKVYRTLKKHYWWPG+KREIADY   
Sbjct: 601 LMKYDRLCVPSDQTIKDQISEEAHSSAYAMHPGSTKVYRTLKKHYWWPGMKREIADY--- 660

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
                                       EHVTMDF  GLPRTTNGNDGIWVIVDRLTKTA
Sbjct: 661 ----------------------------EHVTMDFLFGLPRTTNGNDGIWVIVDRLTKTA 720

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFST 240
           RFLPVK+TFTLDKLAKLYVDKIVSAYGAPISIV DRD +FTSKFWPSLQQALGTKLHFST
Sbjct: 721 RFLPVKLTFTLDKLAKLYVDKIVSAYGAPISIVFDRDFRFTSKFWPSLQQALGTKLHFST 758

Query: 241 AFHPQIDGQ 250
            FHPQ DGQ
Sbjct: 781 TFHPQTDGQ 758

[Close]

BLAST of Cmc08g0224281 vs. ExPASy TrEMBL
Match: A0A5D3D2Y2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004160 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.2e-106
Identity = 202/249 (81.12%), Postives = 207/249 (83.13%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           MGE A+SVGKL SLVAHFQVRP LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA
Sbjct: 541 MGEVAMSVGKLGSLVAHFQVRPILIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 600

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMK DRLCVPSDQTIKDQI EEAHSSAYAMHPGSTKVYRTLKKHYWWPG+KREIADY   
Sbjct: 601 LMKYDRLCVPSDQTIKDQISEEAHSSAYAMHPGSTKVYRTLKKHYWWPGMKREIADY--- 660

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
                                       EHVTMDF  GLPRTTNGNDGIWVIVDRLTKTA
Sbjct: 661 ----------------------------EHVTMDFLFGLPRTTNGNDGIWVIVDRLTKTA 720

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFST 240
           RFLPVK+TFTLDKLAKLYVDKIVSAYGAPISIV D+D +FTSKFWPSLQQALGTKLHFST
Sbjct: 721 RFLPVKLTFTLDKLAKLYVDKIVSAYGAPISIVFDQDFRFTSKFWPSLQQALGTKLHFST 758

Query: 241 AFHPQIDGQ 250
            FHPQ DGQ
Sbjct: 781 TFHPQTDGQ 758

[Close]

BLAST of Cmc08g0224281 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.5e-101
Identity = 195/249 (78.31%), Postives = 202/249 (81.12%), Query Frame = 0


Query: 1   MGEAAVSVGKLESLVAHFQVRPFLIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLRGDGA 60
           M EAAVSVGKL SL+AHFQV+P LIDRIIKAQLDDARLRKLAEEVRQNQRLNYSL+ D A
Sbjct: 700 MDEAAVSVGKLGSLIAHFQVQPILIDRIIKAQLDDARLRKLAEEVRQNQRLNYSLKDDVA 759

Query: 61  LMKCDRLCVPSDQTIKDQILEEAHSSAYAMHPGSTKVYRTLKKHYWWPGIKREIADYVAK 120
           LMK DRLCVPSDQTIKDQIL+EAHSSAYAMHPGSTKVY TLKKHYWW G+KREIADYVAK
Sbjct: 760 LMKYDRLCVPSDQTIKDQILKEAHSSAYAMHPGSTKVYITLKKHYWWLGMKREIADYVAK 819

Query: 121 CLICQQVKPERQRPAGLLNPLPVPEWKWEHVTMDFHLGLPRTTNGNDGIWVIVDRLTKTA 180
           CLICQQVKPERQRPAGLLNPLPV EWKWEH                              
Sbjct: 820 CLICQQVKPERQRPAGLLNPLPVLEWKWEH------------------------------ 879

Query: 181 RFLPVKVTFTLDKLAKLYVDKIVSAYGAPISIVSDRDSKFTSKFWPSLQQALGTKLHFST 240
                 VTFTLDK AKLYVDKIVSAYGAP+SIVSDRDS+FTSKFWPSLQQALGTKLHFST
Sbjct: 880 ------VTFTLDKQAKLYVDKIVSAYGAPVSIVSDRDSRFTSKFWPSLQQALGTKLHFST 912

Query: 241 AFHPQIDGQ 250
           AFHPQ DGQ
Sbjct: 940 AFHPQKDGQ 912

The following BLAST results are available for this feature:

BLAST of Cmc08g0224281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056222.1	8.4e-131	100.00	reverse transcriptase [Cucumis melo var. makuwa] >TYK04055.1 reverse transcripta...	[more]
KAA0036812.1	4.9e-123	88.76	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95880.1 reverse transcripta...	[more]
KAA0042141.1	8.4e-107	81.53	hypothetical protein E6C27_scaffold67G006300 [Cucumis melo var. makuwa]	[more]
TYK18080.1	2.4e-106	81.12	hypothetical protein E5676_scaffold306G004160 [Cucumis melo var. makuwa]	[more]
KAA0035225.1	3.1e-101	78.31	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]

BLAST of Cmc08g0224281 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.7e-30	37.86	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.7e-30	37.86	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	1.1e-29	28.89	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.1e-29	28.89	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.1e-29	28.89	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0224281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UK27	4.0e-131	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46...	[more]
A0A5A7T060	2.4e-123	88.76	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7TKQ0	4.1e-107	81.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D2Y2	1.2e-106	81.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DES5	1.5e-101	78.31	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Cmc08g0224281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 73..129 e-value: 2.8E-19 score: 68.9
None	No IPR available	GENE3D	1.10.340.70		coord: 37..128 e-value: 7.5E-20 score: 73.0
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 64..249
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 138..249 e-value: 2.7E-21 score: 77.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 138..249 score: 12.75701
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 139..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0224281.1	Cmc08g0224281.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding