Cmc08g0224191 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0224191
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDEAD-box ATP-dependent RNA helicase 32
LocationCMiso1.1chr08: 14054857 .. 14056240 (-)
RNA-Seq ExpressionCmc08g0224191
SyntenyCmc08g0224191
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTCTTCATCTTCTTCTCTAAGATAACCCTCTGCTGTCGCCGCCTCATCAGTTGAAGTTAAGATTGGTCTCATCAGTTGAAGTTAAGATTGGTCTCTTTGGAAGCTTGATGATTTAAAGGGATGAGTTTTTCCATCAAGGATAAGAGGATTTTCCAACCTCCATCTGAGTAACCTTGGTAAGCCAATGAAATTAAATTAATATTTTATTAATTTAATTTTGGATCTATTTGGGGTTTCTGTAAATGTTTAATTGGCTAAACTTTTTAAGATCTAAATCTTGGATTTTTCCCAATCAAGGTTGAATTGGTTTCAACCCCAATTTTTAGAAAGTTAATTAATTTGGGAGGATTTTTGGATGTTAACCAATTGCTAATTTCATTAATTAAGATACTAAGTTTTCCTTTTATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCTAGGTAAGAGATTCTCCTACTAGACCTTCGAACTGAATTCAAGAGACCGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGCATAATTTGATGCTATTGATAATGACTGTCATTTTATGTTGATGATTGTTGATGACTGATGTTATGTTAATGACCGGTAGTATGTTGTTGATGACTGTTGATGATTGTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATTAATACTCATGCCATGTTATGATGTTATGTTATGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTACATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTCCGACGGGACGCAAGTCTAGCATGGATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCCTGATTGGTTCACTACAGACCAGCATGTCCTAGGTGCTCCCCCGGGACACTGAAGACCAGATTATCGTTCCTACGGGAGCGTATGTTGCACGTGTTCGGGAACGTGCCAGAGATTGGGTACCATTTTCAGGACTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAATATTTCAGGCAAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGGATCCGTGACATGCCATATGGGGATTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTATTGTCATTGTTTCTCCTTAGTAATGACTTCGACTCAGTATAAGGAGTTGGGTCGTTACAGTTCGTTAATATAATATATATATATATATA

mRNA sequence

GGTTCTTCATCTTCTTCTCTAAGATAACCCTCTGCTGTCGCCGCCTCATCAGTTGAAGTTAAGATTGGTCTCATCAGTTGAAGTTAAGATTGGTCTCTTTGGAAGCTTGATGATTTAAAGGGATGAGTTTTTCCATCAAGGATAAGAGGATTTTCCAACCTCCATCTGAGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCTAGGCAAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGGATCCGTGACATGCCATATGGGGATTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTATTGTCATTGTTTCTCCTTAGTAATGACTTCGACTCAGTATAAGGAGTTGGGTCGTTACAGTTCGTTAATATAATATATATATATATATA

Coding sequence (CDS)

ATGAGTTTTTCCATCAAGGATAAGAGGATTTTCCAACCTCCATCTGAGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCTAGGCAAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAAAGAAGGATCCGTGACATGCCATATGGGGATTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAA

Protein sequence

MSFSIKDKRIFQPPSEIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF
Homology
[Close]
BLAST of Cmc08g0224191 vs. NCBI nr
Match: KAA0051087.1 (transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 48/110 (43.64%), Postives = 50/110 (45.45%), Query Frame = 0 

Query: 16  EIKLIGEFLLSTREYLVWLKS--------------------------------------- 72
           EIKLIGEFLLS REY VWLKS                                       
Sbjct: 724 EIKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRD 783

[Close]
BLAST of Cmc08g0224191 vs. NCBI nr
Match: KAA0053369.1 (hypothetical protein E6C27_scaffold428G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 6.1e-10
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 37  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF 72
           LGKGKGRGKLASD+EGSVTCHMG QFCFRVYVSVF
Sbjct: 131 LGKGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 165

[Close]
BLAST of Cmc08g0224191 vs. NCBI nr
Match: TYJ99939.1 (hypothetical protein E5676_scaffold701G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 7.9e-10
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 37 LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF 72
          LG+GKGRGKLASDKEGSVTCHMG QFCFRVYVSVF
Sbjct: 50 LGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVSVF 84

[Close]
BLAST of Cmc08g0224191 vs. NCBI nr
Match: KAA0045385.1 (hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 16 EIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF 72
          +I +I       R  +V +   G+GKGRGKLASDKEGSVTCHMG QFCFRVYV+VF
Sbjct: 2  DINMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]
BLAST of Cmc08g0224191 vs. NCBI nr
Match: KAA0035872.1 (hypothetical protein E6C27_scaffold56G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 12 QPPSEIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF 71
          Q   +I +I       R  +V +   G+GKGRGKLASD+EGSVTCHMG QFCFRVYVSVF
Sbjct: 4  QSSMDIDMIRVIRRGPRIPIVLVLPRGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 63

[Close]
BLAST of Cmc08g0224191 vs. ExPASy TrEMBL
Match: A0A5D3CKP0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 48/110 (43.64%), Postives = 50/110 (45.45%), Query Frame = 0 

Query: 16  EIKLIGEFLLSTREYLVWLKS--------------------------------------- 72
           EIKLIGEFLLS REY VWLKS                                       
Sbjct: 724 EIKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRD 783

[Close]
BLAST of Cmc08g0224191 vs. ExPASy TrEMBL
Match: A0A5A7UIS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00250 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 37  LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF 72
           LGKGKGRGKLASD+EGSVTCHMG QFCFRVYVSVF
Sbjct: 131 LGKGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 165

[Close]
BLAST of Cmc08g0224191 vs. ExPASy TrEMBL
Match: A0A5D3BLS1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00700 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-10
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 37 LGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF 72
          LG+GKGRGKLASDKEGSVTCHMG QFCFRVYVSVF
Sbjct: 50 LGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVSVF 84

[Close]
BLAST of Cmc08g0224191 vs. ExPASy TrEMBL
Match: A0A5A7TVG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold442G00010 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 16 EIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF 72
          +I +I       R  +V +   G+GKGRGKLASDKEGSVTCHMG QFCFRVYV+VF
Sbjct: 2  DINMIRVIRRDPRSLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]
BLAST of Cmc08g0224191 vs. ExPASy TrEMBL
Match: A0A5A7SXE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00360 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-10
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 12 QPPSEIKLIGEFLLSTREYLVWLKSLGKGKGRGKLASDKEGSVTCHMGIQFCFRVYVSVF 71
          Q   +I +I       R  +V +   G+GKGRGKLASD+EGSVTCHMG QFCFRVYVSVF
Sbjct: 4  QSSMDIDMIRVIRRGPRIPIVLVLPRGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 63

The following BLAST results are available for this feature:
BLAST of Cmc08g0224191 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051087.12.5e-1143.64transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var... [more]
KAA0053369.16.1e-1094.29hypothetical protein E6C27_scaffold428G00250 [Cucumis melo var. makuwa][more]
TYJ99939.17.9e-1094.29hypothetical protein E5676_scaffold701G00700 [Cucumis melo var. makuwa][more]
KAA0045385.11.0e-0962.50hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa][more]
KAA0035872.11.0e-0960.00hypothetical protein E6C27_scaffold56G00360 [Cucumis melo var. makuwa][more]
BLAST of Cmc08g0224191 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc08g0224191 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CKP01.2e-1143.64Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE... [more]
A0A5A7UIS72.9e-1094.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BLS13.8e-1094.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TVG75.0e-1062.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SXE75.0e-1060.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Cmc08g0224191 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0224191.1Cmc08g0224191.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000470 maturation of LSU-rRNA
biological_process GO:0000027 ribosomal large subunit assembly
cellular_component GO:0005730 nucleolus
molecular_function GO:0019843 rRNA binding