Cmc08g0223571 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0223571
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	50S ribosomal protein 5, chloroplastic
Location	CMiso1.1chr08: 13139094 .. 13140846 (+)
RNA-Seq Expression	Cmc08g0223571
Synteny	Cmc08g0223571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATCCAGAGATAGTGAGGGGCTCCCAGTTCACGCCATGGCTTCGTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTTGCACCCATGTTTTCCACCCACTTCTGCCATCCCTAGTAAGTCTCTCCTCGTGAACTTTCCTTTCCCTTCCTCTGCTCGACGGGATCGAATGAATGTCTTTGTCTAATTCTAATTTTTATCTTCCTTTCTCTTTCTACTTATTGTTTGTTGTGCGATTTATTCAAATGGGTAATTTTTTTTGGTCGAACTCGATAAACTATGTGGTGTTTGAGAGAATTTTCTTGCTTGCAGTCATTTGTCCGTCAGGCATTTTGTCAAACAGTTGGTGTCTTTATTTTGAGACTCGATTTTTTAAGCTTCTCTTTTGATGTGCACTGGATCTCGATCTCGCTCGCTTGAATGTGTTTGTGTTCTCTATATTGTGTTTTATATGCTGGTTGCTCTGTTTCTTGTTCGTCATCCTCAATTTCACATATAGTCTACAAGTTTCCTTGTCTTGAATTAGGGTTGAATTTCATTGAAGAGATTGTTTTGAGTGAATTTCATGAATATTAATTTGATTCATAATAGCAAATAGAAGAAAATAACATTATCAGGATCCCTAGCCCCAAACGCTGTGCTAGAATACATATTAAAAAACAAACTCAATCAAAAGCCCTTTAAATAGATTACAGTCTGTTTATTCTTTGGTTATATTACAACTAAGCAAGCTATTTAAACTTGGGTTATATTAATAAAAGAAAGTATTACAAGCTTGTCGGCGAAACTTTAAAGTTTGTTTACTAACTAATAGTCCATTAAGTGTTTATTAAGTCTCTAAACTTTTAAACAATATCTGGTAGGTCTTTAAAATATTAGTCTTAAACTTTTAACTGTCTTTGTTTGGCGCTGAATTTTTGTAGAGATCTCATATATCATCAGGTTTACAATCTATTAAACACTCGTTTAAATTAAGGGCTCTCTTAGACACAATTCGATGAGCTTAGAGACCAAAATAATACATATTGGCTTTAATTGGAATGATTATTTCCTTGGTTTTTATGAATCTCAGTCCAATTTCTATTCCTTTATTGTGGTTTCGATTTCAGGCTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAAACCTTTAATGGAGTCCGGCTACGGAACCACCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAATTGATAGTAGTGAAGTTCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTACGGAGGAAGCGGCTGGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCCTTTTAGCTCCTTGAATTCAATTCTTGCAGATCGAGAGATGCCATTTCTGCTCATCGCTTCCAATTTACTGTCTTATTTCTTTATGCTTTCAAGGAAATGTATTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATTGTTCTTAGTTTTGAACGACTAAATTGGGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTATTGGTAATCTTGCAAAGAAAACCTT

mRNA sequence

CTTATCCAGAGATAGTGAGGGGCTCCCAGTTCACGCCATGGCTTCGTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTTGCACCCATGTTTTCCACCCACTTCTGCCATCCCTAGCTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAAACCTTTAATGGAGTCCGGCTACGGAACCACCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAATTGATAGTAGTGAAGTTCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTACGGAGGAAGCGGCTGGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCCTTTTAGCTCCTTGAATTCAATTCTTGCAGATCGAGAGATGCCATTTCTGCTCATCGCTTCCAATTTACTGTCTTATTTCTTTATGCTTTCAAGGAAATGTATTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATTGTTCTTAGTTTTGAACGACTAAATTGGGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTATTGGTAATCTTGCAAAGAAAACCTT

Coding sequence (CDS)

ATGGCTTCGTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTTGCACCCATGTTTTCCACCCACTTCTGCCATCCCTAGCTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAAACCTTTAATGGAGTCCGGCTACGGAACCACCCTTTTGTTGAAAATACAGCATCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAATTGATAGTAGTGAAGTTCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTACGGAGGAAGCGGCTGGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Protein sequence

MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Homology

[Close]

BLAST of Cmc08g0223571 vs. NCBI nr
Match: XP_008455762.1 (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 4.1e-72
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN 60
           MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN
Sbjct: 1   MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN 60

Query: 61  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKK 120
           TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKK
Sbjct: 61  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKK 120

Query: 121 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of Cmc08g0223571 vs. NCBI nr
Match: XP_004144312.1 (50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypothetical protein Csa_012356 [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 5.3e-64
Identity = 143/153 (93.46%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of Cmc08g0223571 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-54
Identity = 129/158 (81.65%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 1   MASFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLR 60
           MASFLLCSNPLSTS H     P       CFP TSA PS MLLMKPIGFQPK FNGVRL 
Sbjct: 1   MASFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPSPMLLMKPIGFQPKHFNGVRLG 60

Query: 61  NHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 120
              FVEN ASL+VKAASE DA G+ DSSE QP AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 61  KPSFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA 120

Query: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 158

[Close]

BLAST of Cmc08g0223571 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 221.1 bits (562), Expect = 6.5e-54
Identity = 124/156 (79.49%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 3   SFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNH 62
           +FLLCSNPLSTS + S   P       CFP TSA PSS+LLM+P+GFQPK FNGVRLRN 
Sbjct: 2   AFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  PFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
            FVENTASL+VKA SE D TGE DS+E QP AEAKKEDVPVDKLPLESKLQERLEQK RM
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Cmc08g0223571 vs. NCBI nr
Match: KAA0025776.1 (50S ribosomal protein 5 [Cucumis melo var. makuwa] >TYK09678.1 50S ribosomal protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 2.7e-52
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 34  MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED 93
           MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED
Sbjct: 1   MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED 60

Query: 94  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 61  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 118

[Close]

BLAST of Cmc08g0223571 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-15
Identity = 67/148 (45.27%), Postives = 85/148 (57.43%), Query Frame = 0


Query: 5   LLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTASL 64
           LLC N  +T+   ++    FP  +A P S +    IG       G R+   P V+     
Sbjct: 3   LLCFNSFTTT-PVTSSSSLFPHPTANPISRV---RIGLPTNCLKGFRILT-PIVQKPRKN 62

Query: 65  VVKAASETDATGEIDSSEVQPAAEAKKED-VPVDKLPLESKLQERLEQKARMKLAKKIRL 124
            +  AS         +  V+ +   K+ D V VDKLPLESKL+ER E+  +MKLAKKIRL
Sbjct: 63  SIFIASAAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRL 122

Query: 125 RRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           +RKRLVQKR LRKKG WPPSKMKKL+ V
Sbjct: 123 KRKRLVQKRRLRKKGNWPPSKMKKLEGV 145

[Close]

BLAST of Cmc08g0223571 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 61  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKK 120
           T   +V AA+E  A  + D S+V+ A      ++ V  LPLESKLQ +LEQK +MK+AKK
Sbjct: 58  TVVAMVSAAAEETAGEDGDQSKVEEA------NISVQNLPLESKLQLKLEQKIKMKMAKK 117

Query: 121 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           IRLRR RL++KR LRK+G WPPSKMKKLKNV
Sbjct: 118 IRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of Cmc08g0223571 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 73/153 (47.71%), Postives = 91/153 (59.48%), Query Frame = 0


Query: 5   LLCSNPL-STSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTAS 64
           LLC N L S S   S+       + +  S +L +KP   + K  N V L  +    +   
Sbjct: 3   LLCFNSLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNSSHGR 62

Query: 65  LVVKAASETDATGEIDSSEVQPAAEAKK--EDVPVDKLPLESKLQER---LEQKARMKLA 124
           +VVKAA    A+G +D +E +   E K     VPVDKLPLESK  +    LE + +MKLA
Sbjct: 63  IVVKAA----ASG-VDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLA 122

Query: 125 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           KKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 KKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of Cmc08g0223571 vs. ExPASy TrEMBL
Match: A0A1S3C2X0 (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN 60
           MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN
Sbjct: 1   MASFLLCSNPLSTSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVEN 60

Query: 61  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKK 120
           TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKK
Sbjct: 61  TASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKK 120

Query: 121 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of Cmc08g0223571 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.6e-64
Identity = 143/153 (93.46%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGE DSS+VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of Cmc08g0223571 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.2e-54
Identity = 124/156 (79.49%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 3   SFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNH 62
           +FLLCSNPLSTS + S   P       CFP TSA PSS+LLM+P+GFQPK FNGVRLRN 
Sbjct: 2   AFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  PFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
            FVENTASL+VKA SE D TGE DS+E QP AEAKKEDVPVDKLPLESKLQERLEQK RM
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Cmc08g0223571 vs. ExPASy TrEMBL
Match: A0A5D3CEM6 (50S ribosomal protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00820 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.3e-52
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 34  MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED 93
           MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED
Sbjct: 1   MLLMKPIGFQPKTFNGVRLRNHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKED 60

Query: 94  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 61  VPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 118

[Close]

BLAST of Cmc08g0223571 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.5e-51
Identity = 121/156 (77.56%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 3   SFLLCSNPLSTSFHFSTLHP-------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNH 62
           +FLLCSNPLS S H STL P       CFP   +  +SM LMKP GFQPK FNGVRLRN 
Sbjct: 2   AFLLCSNPLSISLHSSTLSPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRLRNP 61

Query: 63  PFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
            FVENT S +VKAASE D TGE DS+E +P+AEAKKEDVPVDKLPLESKLQERLEQKARM
Sbjct: 62  SFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKARM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of Cmc08g0223571 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 73/153 (47.71%), Postives = 91/153 (59.48%), Query Frame = 0


Query: 5   LLCSNPL-STSFHFSTLHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFVENTAS 64
           LLC N L S S   S+       + +  S +L +KP   + K  N V L  +    +   
Sbjct: 3   LLCFNSLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNSSHGR 62

Query: 65  LVVKAASETDATGEIDSSEVQPAAEAKK--EDVPVDKLPLESKLQER---LEQKARMKLA 124
           +VVKAA    A+G +D +E +   E K     VPVDKLPLESK  +    LE + +MKLA
Sbjct: 63  IVVKAA----ASG-VDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLA 122

Query: 125 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 152
           KKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 KKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:

BLAST of Cmc08g0223571 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455762.1	4.1e-72	100.00	PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]	[more]
XP_004144312.1	5.3e-64	93.46	50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypot...	[more]
XP_038881132.1	1.3e-54	81.65	50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r...	[more]
XP_022154476.1	6.5e-54	79.49	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]
KAA0025776.1	2.7e-52	100.00	50S ribosomal protein 5 [Cucumis melo var. makuwa] >TYK09678.1 50S ribosomal pro...	[more]

BLAST of Cmc08g0223571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11891	4.8e-15	45.27	50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV...	[more]
P27684	1.1e-14	58.24	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
Q9LER7	1.8e-14	47.71	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ...	[more]

BLAST of Cmc08g0223571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2X0	2.0e-72	100.00	50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P...	[more]
A0A0A0L3F4	2.6e-64	93.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
A0A6J1DNT9	3.2e-54	79.49	50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5D3CEM6	1.3e-52	100.00	50S ribosomal protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1HS41	1.5e-51	77.56	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Cmc08g0223571 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56910.1	1.3e-15	47.71	plastid-specific 50S ribosomal protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..95
None	No IPR available	PANTHER	PTHR34678:SF1	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 5..151
IPR040307	50S ribosomal protein 5, chloroplastic	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 5..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0223571.1	Cmc08g0223571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome