Cmc08g0223011 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0223011
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr08: 12205312 .. 12206627 (-)
RNA-Seq ExpressionCmc08g0223011
SyntenyCmc08g0223011
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTAGATGTAAAGGACTGGACATGGAACCTATAATAGGAAATGGAGATCCCACATCACTTGCAAGACTTTGGTTGCAAGGGACACTGTTAAAGAAGAAAAAATCCAAAACCATAACTAGTTAGTAGGGCAGAAAAGGACGTGGTAGCCAGTGGCACCAGTGGAGGGACACGTGAATGTGCTGGTTGCGTCATCGGTTGGGTAAGTATAAGCATCAGGGCACCTGTCTTTGAAAAACTTAGAATAATCTGTGGGCCTACACCTCTCCGTAACACTAAAACAACAATACTTCTCCGTTTTGAAGACTTGGCAGGGGTTGTTGCACCCACCATCTGCCTTCAACGCCTCTGGGCACTCCCCATTGATGTCAGCGGTGCAACCCACGACCCTGTTGCATCCCTTAGACTTGGGTTTCAATTCCACTGGTATATTGAACCCGTCCACTAGAGATATGCCAAATATATCCAAATTCTTGCCTTGGTTTAACGAAAATTCAACCAAAGTATTGGGTGGTGAGCCGGAGAATTGGCATTCAAGTTTGCCGCCGCAGTCGCCAGTTTCGCAAATTCCGTGCCCTGTACTGTCAAACTTGCAATTGGTTCTGCCCCAGATTCTTCCCGTTGTAGGGGAGGGTAATTTCAAGAGCCAAGTCTGGTTTGTGTCCAGACGTCGTCCACCGCCGGGGTAGGCCGCTGCCCATACTGTGTAGGGGCAGTTATTGAGAACAGTGAAAGTGGAGAAACTGTCTTGTGGAATTAATGCACATCTTGTGATGAAACCAACACCGGTGTTTGCCATTGAGCCGAAGGGGAGAAGGGATCGGTCAAAATTTGGATCCATTTTCATTATTTGAGCTTCAATTAAGTCATCCTTTATCATAACAGAAACAGAAATGAAAATGGAAATGGAAATGGAAATGGAAATGTGATGTTTGCAGCAAAACAAGAACATGGCTGGAATTTGGTGGATATCTGAGTTGACCCAATAATCACTAACAATTGAATTTGTGTTTTTAAACAACTTTAAAAAAAGAAAAATATGTGGTGGCGGTGGGATCCTATCTTTTCCCCACCAATTAAAAAATAAACCCTACATTTTGAATTTCGTTAACAAAAAAAAATTAAATTAAATGAATTACATGTTGATGAAAGTAACCAAAACCGGTCTGTTCATTACCTGTTCTAAAATGAAAATCCTACTTGTTTTTTTTTTTTATTAATTTAAAACAATATGTATTTAACTTTTAACAATCTGATCAATTAATTTTTCTCTATGATAATTTTTCTATATGATATGATATTTTTTTTTCATTTGAC

mRNA sequence

CCTTTAGATGTAAAGGACTGGACATGGAACCTATAATAGGAAATGGAGATCCCACATCACTTGCAAGACTTTGGTTGCAAGGGACACTGTTAAAGAAGAAAAAATCCAAAACCATAACTAGTTAGTAGGGCAGAAAAGGACGTGGTAGCCAGTGGCACCAGTGGAGGGACACGTGAATGTGCTGGTTGCGTCATCGGTTGGACTTGGCAGGGGTTGTTGCACCCACCATCTGCCTTCAACGCCTCTGGGCACTCCCCATTGATGTCAGCGGTGCAACCCACGACCCTGTTGCATCCCTTAGACTTGGGTTTCAATTCCACTGGTATATTGAACCCGTCCACTAGAGATATGCCAAATATATCCAAATTCTTGCCTTGGTTTAACGAAAATTCAACCAAAGTATTGGGTGGTGAGCCGGAGAATTGGCATTCAAGTTTGCCGCCGCAGTCGCCAGTTTCGCAAATTCCGTGCCCTGTACTGTCAAACTTGCAATTGGTTCTGCCCCAGATTCTTCCCGTTGTAGGGGAGGGTAATTTCAAGAGCCAAGTCTGGTTTGTGTCCAGACGTCGTCCACCGCCGGGGTAGGCCGCTGCCCATACTGTGTAGGGGCAGTTATTGAGAACAGTGAAAGTGGAGAAACTGTCTTGTGGAATTAATGCACATCTTGTGATGAAACCAACACCGGTGTTTGCCATTGAGCCGAAGGGGAGAAGGGATCGGTCAAAATTTGGATCCATTTTCATTATTTGAGCTTCAATTAAGTCATCCTTTATCATAACAGAAACAGAAATGAAAATGGAAATGGAAATGGAAATGGAAATGTGATGTTTGCAGCAAAACAAGAACATGGCTGGAATTTGGTGGATATCTGAGTTGACCCAATAATCACTAACAATTGAATTTGTGTTTTTAAACAACTTTAAAAAAAGAAAAATATGTGGTGGCGGTGGGATCCTATCTTTTCCCCACCAATTAAAAAATAAACCCTACATTTTGAATTTCGTTAACAAAAAAAAATTAAATTAAATGAATTACATGTTGATGAAAGTAACCAAAACCGGTCTGTTCATTACCTGTTCTAAAATGAAAATCCTACTTGTTTTTTTTTTTTATTAATTTAAAACAATATGTATTTAACTTTTAACAATCTGATCAATTAATTTTTCTCTATGATAATTTTTCTATATGATATGATATTTTTTTTTCATTTGAC

Coding sequence (CDS)

ATGTCAGCGGTGCAACCCACGACCCTGTTGCATCCCTTAGACTTGGGTTTCAATTCCACTGGTATATTGAACCCGTCCACTAGAGATATGCCAAATATATCCAAATTCTTGCCTTGGTTTAACGAAAATTCAACCAAAGTATTGGGTGGTGAGCCGGAGAATTGGCATTCAAGTTTGCCGCCGCAGTCGCCAGTTTCGCAAATTCCGTGCCCTGTACTGTCAAACTTGCAATTGGTTCTGCCCCAGATTCTTCCCGTTGTAGGGGAGGGTAATTTCAAGAGCCAAGTCTGGTTTGTGTCCAGACGTCGTCCACCGCCGGGGTAG

Protein sequence

MSAVQPTTLLHPLDLGFNSTGILNPSTRDMPNISKFLPWFNENSTKVLGGEPENWHSSLPPQSPVSQIPCPVLSNLQLVLPQILPVVGEGNFKSQVWFVSRRRPPPG
Homology
[Close]
BLAST of Cmc08g0223011 vs. NCBI nr
Match: KAG5539682.1 (hypothetical protein RHGRI_020030 [Rhododendron griersonianum])

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-14
Identity = 53/108 (49.07%), Postives = 58/108 (53.70%), Query Frame = 0 

Query: 1   MSAVQPTTLLHPLDLGFNSTGILNPSTRDMPNISKFLPWFNENSTKVLGGEPENWHSSLP 60
           MSAV     +HP ++G  S G LNPSTRDM   SKF  WF+  S  VLGG P   HS  P
Sbjct: 203 MSAVHLMPRVHPPEVGLKSIGTLNPSTRDMSKKSKFWNWFSAYSASVLGGWPNAEHSRTP 262

Query: 61  PQSPVSQIPCPVLSNLQLVLPQI-LPVVGEGNFKSQVWFVSRRRPPPG 108
           PQSPV   P P  S LQ V      P V  G    QV  + R RPPPG
Sbjct: 263 PQSPVWHDPRPAPSKLQPVRAHTRAPAVPAGGLMVQVSPLLRGRPPPG 310

[Close]
BLAST of Cmc08g0223011 vs. NCBI nr
Match: KAF9827529.1 (hypothetical protein H0E87_017050, partial [Populus deltoides])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 45/101 (44.55%), Postives = 50/101 (49.50%), Query Frame = 0 

Query: 14  DLGFNSTGILNPSTRDMPNISKFLPWFNENSTKVLGGEPENWHSSLPPQSPVSQIPCPVL 73
           D G  S G LNPSTRDM   SK L  F   S  V GG P+ WH   P QSPVS +P P  
Sbjct: 33  DTGLKSMGTLNPSTRDMSKKSKLLNRFKAYSASVFGGCPKAWHCKSPLQSPVSHVPHPAP 92

Query: 74  SNLQLVLPQI-------LPVVGEGNFKSQVWFVSRRRPPPG 108
           S L LV PQI         V+   +  S +W      PPPG
Sbjct: 93  SKLHLVHPQIRACVVPAFAVMVHDSPGSSLW------PPPG 127

[Close]
BLAST of Cmc08g0223011 vs. NCBI nr
Match: KAF7810249.1 (methyl-CpG-binding domain-containing protein 13-like [Senna tora])

HSP 1 Score: 53.9 bits (128), Expect = 9.8e-04
Identity = 32/65 (49.23%), Postives = 37/65 (56.92%), Query Frame = 0 

Query: 44   STKVLGGEPENWHSSLPPQSPVSQIPCPVLSNLQLVLPQILPV-VGEGNFKSQVWFVSRR 103
            S  VLGG P   H   P QSPV   P PV S LQ V PQ+  + V  G +   +W +SRR
Sbjct: 1067 SANVLGGTPHPLHWRPPVQSPVWHRPRPVPSKLQPVRPQMRTMGVPGGTWTFHLWPLSRR 1126

Query: 104  RPPPG 108
            RPPPG
Sbjct: 1127 RPPPG 1131

The following BLAST results are available for this feature:
BLAST of Cmc08g0223011 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG5539682.14.7e-1449.07hypothetical protein RHGRI_020030 [Rhododendron griersonianum][more]
KAF9827529.12.0e-0944.55hypothetical protein H0E87_017050, partial [Populus deltoides][more]
KAF7810249.19.8e-0449.23methyl-CpG-binding domain-containing protein 13-like [Senna tora][more]
BLAST of Cmc08g0223011 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc08g0223011 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc08g0223011 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0223011.1Cmc08g0223011.1mRNA