Cmc08g0222831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0222831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 11927092 .. 11927475 (-)
RNA-Seq Expression	Cmc08g0222831
Synteny	Cmc08g0222831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTCAGGTTAACGAATGCGCTAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCCTGTTCATTGATGATATATTAGTTTACTCGGTTGATAGAGAAGCCCATGAGAAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAATTGTACGCAAAGTTCAGCAAATGTGAGTTTTGGTTGGAACAAGTAGTATTCTTGGAGCATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTAAATTGGAAAAGACCAACCAGTGCGATAGAAGTACGTAGTTTCCTGGGTTTAGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCATGA

mRNA sequence

ATGCCATTCAGGTTAACGAATGCGCTAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCCTGTTCATTGATGATATATTAGTTTACTCGGTTGATAGAGAAGCCCATGAGAAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAATTGTACGCAAAGTTCAGCAAATGTGAGTTTTGGTTGGAACAAGTAGTATTCTTGGAGCATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTAAATTGGAAAAGACCAACCAGTGCGATAGAAGTACGTAGTTTCCTGGGTTTAGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCATGA

Coding sequence (CDS)

ATGCCATTCAGGTTAACGAATGCGCTAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCCTGTTCATTGATGATATATTAGTTTACTCGGTTGATAGAGAAGCCCATGAGAAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAATTGTACGCAAAGTTCAGCAAATGTGAGTTTTGGTTGGAACAAGTAGTATTCTTGGAGCATATAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTAAATTGGAAAAGACCAACCAGTGCGATAGAAGTACGTAGTTTCCTGGGTTTAGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCATGA

Protein sequence

MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYRRFIEDFS

Homology

[Close]

BLAST of Cmc08g0222831 vs. NCBI nr
Match: KAA0038417.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 5.7e-59
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 744 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 803

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW+RPTSA EVRSFLGLAGYYR
Sbjct: 804 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 863

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 864 RFIEDFS 870

[Close]

BLAST of Cmc08g0222831 vs. NCBI nr
Match: TYJ96975.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 5.7e-59
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 532 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 591

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW+RPTSA EVRSFLGLAGYYR
Sbjct: 592 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 651

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 652 RFIEDFS 658

[Close]

BLAST of Cmc08g0222831 vs. NCBI nr
Match: KAA0036001.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30406.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 4.8e-58
Identity = 116/127 (91.34%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF LTNA AVFMD MNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 83  MPFGLTNAPAVFMDFMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 142

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGV VDPQKVEAVVNW+RPTSA EVRSFLGLAGYYR
Sbjct: 143 LYAKFSKCEFWLEQVVFLGHVVSAKGVGVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 202

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 203 RFIEDFS 209

[Close]

BLAST of Cmc08g0222831 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 4.8e-58
Identity = 117/127 (92.13%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           M F LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW+RPTSA EVRSFLGLAGYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 782 RFIEDFS 788

[Close]

BLAST of Cmc08g0222831 vs. NCBI nr
Match: KAA0061419.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 1.8e-57
Identity = 116/127 (91.34%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF LTNA  VFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 1   MPFCLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 60

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW+RPTSA EV SFLGLAGYYR
Sbjct: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYR 120

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 121 RFIEDFS 127

[Close]

BLAST of Cmc08g0222831 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-21
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           +PF L NA A+F  +++ I  +++ +   ++IDDI+V+S D + H K+LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           L     K  F   QV FL +IV+A G+  DP+KV A+     PTS  E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIEDFS 128
           +FI+D++
Sbjct: 370 KFIQDYA 376

[Close]

BLAST of Cmc08g0222831 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-21
Identity = 50/127 (39.37%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF L NA A F   MN I    L++  ++++DDI+++S     H   +++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           L  +  KCEF  ++  FL HIV+  G+  +P KV+A+V++  PT   E+R+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIEDFS 128
           +FI +++
Sbjct: 453 KFIPNYA 459

[Close]

BLAST of Cmc08g0222831 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-21
Identity = 48/127 (37.80%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF L NA A F   MN I    L++  ++++DDI+V+S   + H + L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           L  +  KCEF  ++  FL H+++  G+  +P+K+EA+  +  PT   E+++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIEDFS 128
           +FI +F+
Sbjct: 454 KFIPNFA 460

[Close]

BLAST of Cmc08g0222831 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-18
Identity = 45/127 (35.43%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           +PF L NA ++F   ++ +  + + +   +++DD++++S +   H +H+  VL+ L D  
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           +     K  F+ E V +L  IVS  G   DP+KV+A+  +  P    +VRSFLGLA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFIEDFS 128
            FI+DF+
Sbjct: 429 VFIKDFA 435

[Close]

BLAST of Cmc08g0222831 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.5e-17
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MP+ ++ A A F   +N I  +  +  V+ ++DDIL++S     H KH++ VLQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           L    +KCEF   QV F+ + +S KG +   + ++ V+ WK+P +  E+R FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFI 124
           +FI
Sbjct: 654 KFI 656

[Close]

BLAST of Cmc08g0222831 vs. ExPASy TrEMBL
Match: A0A5A7TA17 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003160 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 744 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 803

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW+RPTSA EVRSFLGLAGYYR
Sbjct: 804 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 863

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 864 RFIEDFS 870

[Close]

BLAST of Cmc08g0222831 vs. ExPASy TrEMBL
Match: A0A5D3BEU1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00190 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59
Identity = 118/127 (92.91%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 532 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 591

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW+RPTSA EVRSFLGLAGYYR
Sbjct: 592 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 651

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 652 RFIEDFS 658

[Close]

BLAST of Cmc08g0222831 vs. ExPASy TrEMBL
Match: A0A5A7T306 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00050 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.3e-58
Identity = 116/127 (91.34%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF LTNA AVFMD MNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 83  MPFGLTNAPAVFMDFMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 142

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGV VDPQKVEAVVNW+RPTSA EVRSFLGLAGYYR
Sbjct: 143 LYAKFSKCEFWLEQVVFLGHVVSAKGVGVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 202

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 203 RFIEDFS 209

[Close]

BLAST of Cmc08g0222831 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.3e-58
Identity = 117/127 (92.13%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           M F LTNA AVFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW+RPTSA EVRSFLGLAGYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 782 RFIEDFS 788

[Close]

BLAST of Cmc08g0222831 vs. ExPASy TrEMBL
Match: A0A5D3DZ50 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00500 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.8e-58
Identity = 116/127 (91.34%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MPFRLTNALAVFMDLMNRIFHQYLDQFVILFIDDILVYSVDREAHEKHLRIVLQTLRDKQ 60
           MPF LTNA  VFMDLMNRIFHQYLDQFVI+FIDDILVYSVDRE+HE+HLRIVLQTLRDKQ
Sbjct: 453 MPFCLTNAPTVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 512

Query: 61  LYAKFSKCEFWLEQVVFLEHIVSAKGVSVDPQKVEAVVNWKRPTSAIEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL H+VSAKGVSVDPQKVEAVVNW+RPTSA EV SFLGLAGYYR
Sbjct: 513 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVCSFLGLAGYYR 572

Query: 121 RFIEDFS 128
           RFIEDFS
Sbjct: 573 RFIEDFS 579

[Close]

BLAST of Cmc08g0222831 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 9.8e-17
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 48  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFL--EHIVSAKGVSVDPQKVEAVVNWKRPTS 107
           HL +VLQ     Q YA   KC F   Q+ +L   HI+S +GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 AIEVRSFLGLAGYYRRFIEDF 127
             E+R FLGL GYYRRF++++
Sbjct: 63  TTELRGFLGLTGYYRRFVKNY 83

The following BLAST results are available for this feature:

BLAST of Cmc08g0222831 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038417.1	5.7e-59	92.91	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ96975.1	5.7e-59	92.91	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0036001.1	4.8e-58	91.34	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30406.1 D...	[more]
KAA0053222.1	4.8e-58	92.13	hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]	[more]
KAA0061419.1	1.8e-57	91.34	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0222831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	1.7e-21	40.16	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	3.7e-21	39.37	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.7e-21	37.80	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10401	1.0e-18	35.43	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	9.5e-17	35.77	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc08g0222831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TA17	2.8e-59	92.91	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BEU1	2.8e-59	92.91	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7T306	2.3e-58	91.34	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UBV9	2.3e-58	92.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DZ50	8.8e-58	91.34	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Cmc08g0222831 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	9.8e-17	48.15	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 5..78 e-value: 3.3E-11 score: 43.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 1.6E-28 score: 101.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..127 e-value: 1.3E-12 score: 49.5
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..127
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..127
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.63422E-32 score: 110.763
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0222831.1	Cmc08g0222831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding