Cmc08g0221791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0221791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 9873488 .. 9873901 (+)
RNA-Seq Expression	Cmc08g0221791
Synteny	Cmc08g0221791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTTCCATTTACTCCTCAACAAAATTACATTGTTGAGTGGAAGAACCGAATAATACTTAACATGGCCCGAAGCATGTTGAAGAGCAAAAAGATGCCAAAACAATTTTGGGTACAAGTTGTTGAATGTGCAGTATACTTGTCAAATCGTTCCTCTACAAGAAGCTTGTGTAATAAAACTCATAAACAAGCATGGATAGGAAGAAAACCATCGATTGCTCATTTGAGAGTATTTGGATGTATCGCTTATGCGCAAATACCTGATAAAAAACGTAGTAAGCTTGATGATAAAAGTGAGAAACATGTTTTTGTTGGCTATGATGAAAGCTTAAAAGACTACAAGCTTTACAATCCTGTTACAAAGAAGACGATGATAAATAGAGAGGTTGTGTTTGATGAAGAAGCATCATGA

mRNA sequence

ATGACAGTTCCATTTACTCCTCAACAAAATTACATTGTTGAGTGGAAGAACCGAATAATACTTAACATGGCCCGAAGCATGTTGAAGAGCAAAAAGATGCCAAAACAATTTTGGGTACAAGTTGTTGAATGTGCAGTATACTTGTCAAATCGTTCCTCTACAAGAAGCTTGTGTAATAAAACTCATAAACAAGCATGGATAGGAAGAAAACCATCGATTGCTCATTTGAGAGTATTTGGATGTATCGCTTATGCGCAAATACCTGATAAAAAACGTAGTAAGCTTGATGATAAAAGTGAGAAACATGTTTTTGTTGGCTATGATGAAAGCTTAAAAGACTACAAGCTTTACAATCCTGTTACAAAGAAGACGATGATAAATAGAGAGGTTGTGTTTGATGAAGAAGCATCATGA

Coding sequence (CDS)

ATGACAGTTCCATTTACTCCTCAACAAAATTACATTGTTGAGTGGAAGAACCGAATAATACTTAACATGGCCCGAAGCATGTTGAAGAGCAAAAAGATGCCAAAACAATTTTGGGTACAAGTTGTTGAATGTGCAGTATACTTGTCAAATCGTTCCTCTACAAGAAGCTTGTGTAATAAAACTCATAAACAAGCATGGATAGGAAGAAAACCATCGATTGCTCATTTGAGAGTATTTGGATGTATCGCTTATGCGCAAATACCTGATAAAAAACGTAGTAAGCTTGATGATAAAAGTGAGAAACATGTTTTTGTTGGCTATGATGAAAGCTTAAAAGACTACAAGCTTTACAATCCTGTTACAAAGAAGACGATGATAAATAGAGAGGTTGTGTTTGATGAAGAAGCATCATGA

Protein sequence

MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNKTHKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPVTKKTMINREVVFDEEAS

Homology

[Close]

BLAST of Cmc08g0221791 vs. NCBI nr
Match: KAA0062709.1 (copia-type polyprotein [Cucumis melo var. makuwa] >TYK20607.1 copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN IVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK
Sbjct: 86  MTVPFTPQQNDIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 145

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV
Sbjct: 146 THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 205

Query: 121 TKKTMINREVVFDEEAS 138
           TKKTMINREVVFDEEAS
Sbjct: 206 TKKTMINREVVFDEEAS 222

[Close]

BLAST of Cmc08g0221791 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 112/137 (81.75%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN +VE KNR ILNMARSMLK KKMPK+FW Q VECAVYLSNRS TRSL NK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           T +QAW GRKPSI HLRVFGC+AYA IPD+KRSKLDDKSEK+VFVGYD S K YKLYNPV
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKTMINREVVFDEEAS 138
           TKKT+++R+VVFDEEAS
Sbjct: 726 TKKTIVSRDVVFDEEAS 742

[Close]

BLAST of Cmc08g0221791 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 112/137 (81.75%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN +VE KNR ILNMARSMLK KKMPK+FW Q VECAVYLSNRS TRSL NK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           T +QAW GRKPSI HLRVFGC+AYA IPD+KRSKLDDKSEK+VFVGYD S K YKLYNPV
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKTMINREVVFDEEAS 138
           TKKT+++R+VVFDEEAS
Sbjct: 726 TKKTIVSRDVVFDEEAS 742

[Close]

BLAST of Cmc08g0221791 vs. NCBI nr
Match: TYJ96309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 112/137 (81.75%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN +VE KNR ILNMARSMLK KKMPK+FW Q VECAVYLSNRS TRSL NK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           T +QAW GRKPSI HLRVFGC+AYA IPD+KRSKLDDKSEK+VFVGYD S K YKLYNPV
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKTMINREVVFDEEAS 138
           TKKT+++R+VVFDEEAS
Sbjct: 726 TKKTIVSRDVVFDEEAS 742

[Close]

BLAST of Cmc08g0221791 vs. NCBI nr
Match: TYK06895.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 112/137 (81.75%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN +VE KNR ILNMARSMLK KKMPK+FW Q VECAVYLSNRS TRSL NK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           T +QAW GRKPSI HLRVFGC+AYA IPD+KRSKLDDKSEK+VFVGYD S K YKLYNPV
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKTMINREVVFDEEAS 138
           TKKT+++R+VVFDEEAS
Sbjct: 726 TKKTIVSRDVVFDEEAS 742

[Close]

BLAST of Cmc08g0221791 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-28
Identity = 60/133 (45.11%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 2   TVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNKT 61
           TVP TPQ N + E  NR I+   RSML+  K+PK FW + V+ A YL NRS +  L  + 
Sbjct: 574 TVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEI 633

Query: 62  HKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPVT 121
            ++ W  ++ S +HL+VFGC A+A +P ++R+KLDDKS   +F+GY +    Y+L++PV 
Sbjct: 634 PERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVK 693

Query: 122 KKTMINREVVFDE 135
           KK + +R+VVF E
Sbjct: 694 KKVIRSRDVVFRE 706

[Close]

BLAST of Cmc08g0221791 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-21
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSL--C 60
           +TVP TPQ N + E   R I   AR+M+   K+ K FW + V  A YL NR  +R+L   
Sbjct: 573 LTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDS 632

Query: 61  NKTHKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYN 120
           +KT  + W  +KP + HLRVFG   Y  I + K+ K DDKS K +FVGY+ +   +KL++
Sbjct: 633 SKTPYEMWHNKKPYLKHLRVFGATVYVHIKN-KQGKFDDKSFKSIFVGYEPN--GFKLWD 692

Query: 121 PVTKKTMINREVVFDE 135
            V +K ++ R+VV DE
Sbjct: 693 AVNEKFIVARDVVVDE 705

[Close]

BLAST of Cmc08g0221791 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-15
Identity = 48/131 (36.64%), Postives = 67/131 (51.15%), Query Frame = 0


Query: 4   PFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNKTHK 63
           P TP+ N + E K+R I+    ++L    +PK +W      AVYL NR  T  L  ++  
Sbjct: 616 PHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPF 675

Query: 64  QAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPVTKK 123
           Q   G  P+   LRVFGC  Y  +    + KLDDKS + VF+GY  +   Y   +  T +
Sbjct: 676 QKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSR 735

Query: 124 TMINREVVFDE 135
             I+R V FDE
Sbjct: 736 LYISRHVRFDE 746

[Close]

BLAST of Cmc08g0221791 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-15
Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 4   PFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNKTHK 63
           P TP+ N + E K+R I+ M  ++L    +PK +W      AVYL NR  T  L  ++  
Sbjct: 595 PHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPF 654

Query: 64  QAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPVTKK 123
           Q   G+ P+   L+VFGC  Y  +    R KL+DKS++  F+GY  +   Y   +  T +
Sbjct: 655 QKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGR 714

Query: 124 TMINREVVFDE 135
              +R V FDE
Sbjct: 715 LYTSRHVQFDE 725

[Close]

BLAST of Cmc08g0221791 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.0e-05
Identity = 25/85 (29.41%), Postives = 40/85 (47.06%), Query Frame = 0


Query: 17  NRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNKTHKQAWIGRKPSIAHL 76
           NR I+   RSML    +PK F       AV++ N+  + ++      + W    P+ ++L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 77  RVFGCIAYAQIPDKKRSKLDDKSEK 102
           R FGC+AY    + K      K E+
Sbjct: 62  RRFGCVAYIHCDEGKLKPRAKKGEE 86

[Close]

BLAST of Cmc08g0221791 vs. ExPASy TrEMBL
Match: A0A5D3DAK3 (Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00310 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.2e-72
Identity = 136/137 (99.27%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN IVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK
Sbjct: 86  MTVPFTPQQNDIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 145

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV
Sbjct: 146 THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 205

Query: 121 TKKTMINREVVFDEEAS 138
           TKKTMINREVVFDEEAS
Sbjct: 206 TKKTMINREVVFDEEAS 222

[Close]

BLAST of Cmc08g0221791 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 112/137 (81.75%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN +VE KNR ILNMARSMLK KKMPK+FW Q VECAVYLSNRS TRSL NK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           T +QAW GRKPSI HLRVFGC+AYA IPD+KRSKLDDKSEK+VFVGYD S K YKLYNPV
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKTMINREVVFDEEAS 138
           TKKT+++R+VVFDEEAS
Sbjct: 726 TKKTIVSRDVVFDEEAS 742

[Close]

BLAST of Cmc08g0221791 vs. ExPASy TrEMBL
Match: A0A5A7SH73 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00300 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 112/137 (81.75%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN +VE KNR ILNMARSMLK KKMPK+FW Q VECAVYLSNRS TRSL NK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           T +QAW GRKPSI HLRVFGC+AYA IPD+KRSKLDDKSEK+VFVGYD S K YKLYNPV
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKTMINREVVFDEEAS 138
           TKKT+++R+VVFDEEAS
Sbjct: 726 TKKTIVSRDVVFDEEAS 742

[Close]

BLAST of Cmc08g0221791 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 112/137 (81.75%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN +VE KNR ILNMARSMLK KKMPK+FW Q VECAVYLSNRS TRSL NK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           T +QAW GRKPSI HLRVFGC+AYA IPD+KRSKLDDKSEK+VFVGYD S K YKLYNPV
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKTMINREVVFDEEAS 138
           TKKT+++R+VVFDEEAS
Sbjct: 726 TKKTIVSRDVVFDEEAS 742

[Close]

BLAST of Cmc08g0221791 vs. ExPASy TrEMBL
Match: A0A5A7V308 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00290 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 112/137 (81.75%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 1   MTVPFTPQQNYIVEWKNRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNK 60
           MTVPFTPQQN +VE KNR ILNMARSMLK KKMPK+FW Q VECAVYLSNRS TRSL NK
Sbjct: 606 MTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNK 665

Query: 61  THKQAWIGRKPSIAHLRVFGCIAYAQIPDKKRSKLDDKSEKHVFVGYDESLKDYKLYNPV 120
           T +QAW GRKPSI HLRVFGC+AYA IPD+KRSKLDDKSEK+VFVGYD S K YKLYNPV
Sbjct: 666 TPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPV 725

Query: 121 TKKTMINREVVFDEEAS 138
           TKKT+++R+VVFDEEAS
Sbjct: 726 TKKTIVSRDVVFDEEAS 742

[Close]

BLAST of Cmc08g0221791 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 6.4e-06
Identity = 25/85 (29.41%), Postives = 40/85 (47.06%), Query Frame = 0


Query: 17  NRIILNMARSMLKSKKMPKQFWVQVVECAVYLSNRSSTRSLCNKTHKQAWIGRKPSIAHL 76
           NR I+   RSML    +PK F       AV++ N+  + ++      + W    P+ ++L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 77  RVFGCIAYAQIPDKKRSKLDDKSEK 102
           R FGC+AY    + K      K E+
Sbjct: 62  RRFGCVAYIHCDEGKLKPRAKKGEE 86

The following BLAST results are available for this feature:

BLAST of Cmc08g0221791 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062709.1	1.1e-71	99.27	copia-type polyprotein [Cucumis melo var. makuwa] >TYK20607.1 copia-type polypro...	[more]
TYK18362.1	3.4e-57	81.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	3.4e-57	81.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ96309.1	3.4e-57	81.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK06895.1	3.4e-57	81.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc08g0221791 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.4e-28	45.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-21	42.65	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.5e-15	36.64	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.3e-15	35.11	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92512	9.0e-05	29.41	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0221791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DAK3	5.2e-72	99.27	Copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A5A7V3X9	1.6e-57	81.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SH73	1.6e-57	81.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	1.6e-57	81.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V308	1.6e-57	81.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc08g0221791 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	6.4e-06	29.41	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..103 e-value: 8.8E-12 score: 46.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..136
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0221791.1	Cmc08g0221791.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding