Cmc08g0218651 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0218651
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Shikimate kinase
Location	CMiso1.1chr08: 6847583 .. 6848508 (+)
RNA-Seq Expression	Cmc08g0218651
Synteny	Cmc08g0218651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAATTTTAACTATTTACATTAAATTGATTTCACTACAATACCAACTTCCAAAGCACAAGCTATAAATCAAGTGAGGAACAAAATAAAAATGGCAAAAAGAGGGAAAGAAAAATGAAACTATTAAAAATGGGGTAAAATCAAACAACAAAGAATGAACAATCCCAATCCAAAAATTGCTAAAAAGGGATAAAATAAAGAATCAAGAACAGAGAAGAACAACAGAGGAAGAAATCATGAAGAGATAAATGAAGATCAAGAACCCAAAATGCAGAGCCCAATTCCTTTTAAACTTACCCAAATAACTCTCCGGTGGTTCCTGATAATGAATCTCAAATTCCTCATCCGTCACGCCTCCATCAAACCCTCCATCGACGGCGGCGGAAATCTTCATCTTCATTTCTCTGAGGCGTTCAGTTGCGAAACCCAGAGTAAGCTTATGGCAACGGCGCTGATACTTGAAGCCATTGATGCAACGGAGGGTCTGAGCAACAGAGACATAGAAACTGAGATGGGAAACGGAGAGAAGAGCAATGGGGATCCAGCAATGGCGGCATTCGAGGCGAGGGGAAAGAGATTGGGTCAGGAAAATGAGAGCGAGGAATATGAAGAAGAGCTGGAAAAGCTTGTGAAGCTCTTTCTTTTGGAGATCTATGGCGCGTTTCTTCTCGAGGGTCTTCTCGAAATGGAGTTGGATTATGGTGTTGAGAGCTTGGAGAGCTGTTTCTTTGGAGATTGATGGGTGTTGCCGAATCTGGGTTTCAATATCCGCCATTGATGAAGAAGGTTTGGTTTGGAGTAAAAATGGGATGTGAAGTGGGAAGTGAGAAACAAGAAAAGGGGGATCCGACGAATCTGTGAAGGATATTTGGATTAGTTGAGATTTTTTTTCCCCCCCCGACAAATTTTAACTAATTTTACCATTCT

mRNA sequence

TCAAATTTTAACTATTTACATTAAATTGATTTCACTACAATACCAACTTCCAAAGCACAAGCTATAAATCAAGTGAGGAACAAAATAAAAATGGCAAAAAGAGGGAAAGAAAAATGAAACTATTAAAAATGGGGTAAAATCAAACAACAAAGAATGAACAATCCCAATCCAAAAATTGCTAAAAAGGGATAAAATAAAGAATCAAGAACAGAGAAGAACAACAGAGGAAGAAATCATGAAGAGATAAATGAAGATCAAGAACCCAAAATGCAGAGCCCAATTCCTTTTAAACTTACCCAAATAACTCTCCGGTGGTTCCTGATAATGAATCTCAAATTCCTCATCCGTCACGCCTCCATCAAACCCTCCATCGACGGCGGCGGAAATCTTCATCTTCATTTCTCTGAGGCGTTCAGTTGCGAAACCCAGAGTAAGCTTATGGCAACGGCGCTGATACTTGAAGCCATTGATGCAACGGAGGGTCTGAGCAACAGAGACATAGAAACTGAGATGGGAAACGGAGAGAAGAGCAATGGGGATCCAGCAATGGCGGCATTCGAGGCGAGGGGAAAGAGATTGGGTCAGGAAAATGAGAGCGAGGAATATGAAGAAGAGCTGGAAAAGCTTGTGAAGCTCTTTCTTTTGGAGATCTATGGCGCGTTTCTTCTCGAGGGTCTTCTCGAAATGGAGTTGGATTATGGTGTTGAGAGCTTGGAGAGCTGTTTCTTTGGAGATTGATGGGTGTTGCCGAATCTGGGTTTCAATATCCGCCATTGATGAAGAAGGTTTGGTTTGGAGTAAAAATGGGATGTGAAGTGGGAAGTGAGAAACAAGAAAAGGGGGATCCGACGAATCTGTGAAGGATATTTGGATTAGTTGAGATTTTTTTTCCCCCCCCGACAAATTTTAACTAATTTTACCATTCT

Coding sequence (CDS)

ATGCAGAGCCCAATTCCTTTTAAACTTACCCAAATAACTCTCCGGTGGTTCCTGATAATGAATCTCAAATTCCTCATCCGTCACGCCTCCATCAAACCCTCCATCGACGGCGGCGGAAATCTTCATCTTCATTTCTCTGAGGCGTTCAGTTGCGAAACCCAGAGTAAGCTTATGGCAACGGCGCTGATACTTGAAGCCATTGATGCAACGGAGGGTCTGAGCAACAGAGACATAGAAACTGAGATGGGAAACGGAGAGAAGAGCAATGGGGATCCAGCAATGGCGGCATTCGAGGCGAGGGGAAAGAGATTGGGTCAGGAAAATGAGAGCGAGGAATATGAAGAAGAGCTGGAAAAGCTTGTGAAGCTCTTTCTTTTGGAGATCTATGGCGCGTTTCTTCTCGAGGGTCTTCTCGAAATGGAGTTGGATTATGGTGTTGAGAGCTTGGAGAGCTGTTTCTTTGGAGATTGA

Protein sequence

MQSPIPFKLTQITLRWFLIMNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMATALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKLVKLFLLEIYGAFLLEGLLEMELDYGVESLESCFFGD

Homology

[Close]

BLAST of Cmc08g0218651 vs. NCBI nr
Match: KAA0025559.1 (hypothetical protein E6C27_scaffold253G00480 [Cucumis melo var. makuwa] >TYK12434.1 hypothetical protein E5676_scaffold255G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 20  MNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMATALILEAIDATEGLSNRDIE 79
           MNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMATALILEAIDATEGLSNRDIE
Sbjct: 1   MNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMATALILEAIDATEGLSNRDIE 60

Query: 80  TEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKLVKLFLLEIYGAFLLEGLLE 139
           TEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKLVKLFLLEIYGAFLLEGLLE
Sbjct: 61  TEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKLVKLFLLEIYGAFLLEGLLE 120

Query: 140 MELDYGVESLESCFFGD 157
           MELDYGVESLESCFFGD
Sbjct: 121 MELDYGVESLESCFFGD 137

[Close]

BLAST of Cmc08g0218651 vs. NCBI nr
Match: KAF5457973.1 (hypothetical protein F2P56_022042 [Juglans regia])

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-36
Identity = 86/154 (55.84%), Postives = 112/154 (72.73%), Query Frame = 0


Query: 1   MQSPIPFKLTQITLRWFLIMNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMAT 60
           MQSP P KLT++TLR  L+MNLK  +  + I+     G + HLH  E     ++S+L+A 
Sbjct: 1   MQSPAPLKLTKVTLRRLLVMNLKVTVA-SPIEVLATSGTHFHLHLPELLGGHSKSQLVAA 60

Query: 61  ALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKL 120
            L+LE +DA EGL + D+E E+G GE+S+GDPAMAA EARG  L +ENE++E EE+LE+L
Sbjct: 61  PLVLEPVDALEGLGHGDVEDEVGEGEESDGDPAMAALEARGLSLCKENETQEDEEKLEEL 120

Query: 121 VKLFLLEIYGAFLLEGLLEMELDYGVESLESCFF 155
           V+L LLE+YGA LL+GLLEMELDYGV  LE C F
Sbjct: 121 VELLLLEVYGALLLQGLLEMELDYGVYGLEGCLF 153

[Close]

BLAST of Cmc08g0218651 vs. NCBI nr
Match: QCE15268.1 (hypothetical protein DEO72_LG11g2277 [Vigna unguiculata])

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-34
Identity = 82/154 (53.25%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 1   MQSPIPFKLTQITLRWFLIMNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMAT 60
           M+ PIP KL+++ L  FL++NL+ LI +  +  ++ GG    L   E    E + +L+A 
Sbjct: 1   MKCPIPLKLSEVALGGFLVVNLELLIGNTVVVSTV-GGAEPDLDLPELLGGEAEGELVAA 60

Query: 61  ALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKL 120
           AL+LEA+DA EGL + D+E E+G+GE+ +GDPA+AA EARG  LG+E ESEE EE LEKL
Sbjct: 61  ALVLEAVDAAEGLRDGDVEDEVGDGEQRDGDPAVAALEARGLGLGEEEESEEDEENLEKL 120

Query: 121 VKLFLLEIYGAFLLEGLLEMELDYGVESLESCFF 155
           VKL LL++YG FLL+GLLE++LDYGV+ L+ CFF
Sbjct: 121 VKLLLLKVYGPFLLQGLLEVKLDYGVQRLKRCFF 153

[Close]

BLAST of Cmc08g0218651 vs. NCBI nr
Match: KAG2399416.1 (uncharacterized protein HKW66_Vig0081020 [Vigna angularis])

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-34
Identity = 81/154 (52.60%), Postives = 114/154 (74.03%), Query Frame = 0


Query: 1   MQSPIPFKLTQITLRWFLIMNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMAT 60
           M+ PIP KL+++ L  FL++NL+ LI +  +  ++ GG    L   E    E +S+L+A 
Sbjct: 1   MKCPIPLKLSEVALGGFLVVNLELLIGNTIVVTTV-GGAEPDLDLPELLGGEAESELVAA 60

Query: 61  ALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKL 120
           AL+LEA+DA EGL + D+E E+G+GE+ +GDPA+ A EARG  LG+E ESEE EE L++L
Sbjct: 61  ALVLEAVDAAEGLGDGDVEDEVGDGEQRDGDPAVTALEARGLGLGEEEESEEDEENLKEL 120

Query: 121 VKLFLLEIYGAFLLEGLLEMELDYGVESLESCFF 155
           VKL LL++YG FLL+GLLE++LDYGV+SL+ CFF
Sbjct: 121 VKLLLLKVYGPFLLQGLLEVKLDYGVQSLKRCFF 153

[Close]

BLAST of Cmc08g0218651 vs. NCBI nr
Match: KOM41146.1 (hypothetical protein LR48_Vigan04g134400 [Vigna angularis])

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-34
Identity = 81/154 (52.60%), Postives = 114/154 (74.03%), Query Frame = 0


Query: 1   MQSPIPFKLTQITLRWFLIMNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMAT 60
           M+ PIP KL+++ L  FL++NL+ LI +  +  ++ GG    L   E    E +S+L+A 
Sbjct: 1   MKCPIPLKLSEVALGGFLVVNLELLIGNTIVVTTV-GGAEPDLDLPELLGGEAESELVAA 60

Query: 61  ALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKL 120
           AL+LEA+DA EGL + D+E E+G+GE+ +GDPA+ A EARG  LG+E ESEE EE L++L
Sbjct: 61  ALVLEAVDAAEGLGDGDVEDEVGDGEQRDGDPAVTALEARGLGLGEEEESEEDEENLKEL 120

Query: 121 VKLFLLEIYGAFLLEGLLEMELDYGVESLESCFF 155
           VKL LL++YG FLL+GLLE++LDYGV+SL+ CFF
Sbjct: 121 VKLLLLKVYGPFLLQGLLEVKLDYGVQSLKRCFF 153

[Close]

BLAST of Cmc08g0218651 vs. ExPASy TrEMBL
Match: A0A0A0KJ28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485135 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.2e-73
Identity = 146/156 (93.59%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MQSPIPFKLTQITLRWFLIMNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMAT 60
           MQSPIPFKLTQITL WFLIMNLKFLIRHASIKP IDGGGNLH H SEAFS ETQSKLMAT
Sbjct: 1   MQSPIPFKLTQITLGWFLIMNLKFLIRHASIKPCIDGGGNLHPHLSEAFSSETQSKLMAT 60

Query: 61  ALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKL 120
           AL+LEAIDATEGLS+RD+ETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKL
Sbjct: 61  ALVLEAIDATEGLSDRDVETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKL 120

Query: 121 VKLFLLEIYGAFLLEGLLEMELDYGVESLESCFFGD 157
           VKLFLLEIYGAFLLEGLLEMELD GVESLESCF GD
Sbjct: 121 VKLFLLEIYGAFLLEGLLEMELDNGVESLESCFLGD 156

[Close]

BLAST of Cmc08g0218651 vs. ExPASy TrEMBL
Match: A0A5D3CMS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00090 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.2e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 20  MNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMATALILEAIDATEGLSNRDIE 79
           MNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMATALILEAIDATEGLSNRDIE
Sbjct: 1   MNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMATALILEAIDATEGLSNRDIE 60

Query: 80  TEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKLVKLFLLEIYGAFLLEGLLE 139
           TEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKLVKLFLLEIYGAFLLEGLLE
Sbjct: 61  TEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKLVKLFLLEIYGAFLLEGLLE 120

Query: 140 MELDYGVESLESCFFGD 157
           MELDYGVESLESCFFGD
Sbjct: 121 MELDYGVESLESCFFGD 137

[Close]

BLAST of Cmc08g0218651 vs. ExPASy TrEMBL
Match: A0A4D6NPL4 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2277 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.6e-35
Identity = 82/154 (53.25%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 1   MQSPIPFKLTQITLRWFLIMNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMAT 60
           M+ PIP KL+++ L  FL++NL+ LI +  +  ++ GG    L   E    E + +L+A 
Sbjct: 1   MKCPIPLKLSEVALGGFLVVNLELLIGNTVVVSTV-GGAEPDLDLPELLGGEAEGELVAA 60

Query: 61  ALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKL 120
           AL+LEA+DA EGL + D+E E+G+GE+ +GDPA+AA EARG  LG+E ESEE EE LEKL
Sbjct: 61  ALVLEAVDAAEGLRDGDVEDEVGDGEQRDGDPAVAALEARGLGLGEEEESEEDEENLEKL 120

Query: 121 VKLFLLEIYGAFLLEGLLEMELDYGVESLESCFF 155
           VKL LL++YG FLL+GLLE++LDYGV+ L+ CFF
Sbjct: 121 VKLLLLKVYGPFLLQGLLEVKLDYGVQRLKRCFF 153

[Close]

BLAST of Cmc08g0218651 vs. ExPASy TrEMBL
Match: A0A0L9UEK2 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g134400 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 81/154 (52.60%), Postives = 114/154 (74.03%), Query Frame = 0


Query: 1   MQSPIPFKLTQITLRWFLIMNLKFLIRHASIKPSIDGGGNLHLHFSEAFSCETQSKLMAT 60
           M+ PIP KL+++ L  FL++NL+ LI +  +  ++ GG    L   E    E +S+L+A 
Sbjct: 1   MKCPIPLKLSEVALGGFLVVNLELLIGNTIVVTTV-GGAEPDLDLPELLGGEAESELVAA 60

Query: 61  ALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEARGKRLGQENESEEYEEELEKL 120
           AL+LEA+DA EGL + D+E E+G+GE+ +GDPA+ A EARG  LG+E ESEE EE L++L
Sbjct: 61  ALVLEAVDAAEGLGDGDVEDEVGDGEQRDGDPAVTALEARGLGLGEEEESEEDEENLKEL 120

Query: 121 VKLFLLEIYGAFLLEGLLEMELDYGVESLESCFF 155
           VKL LL++YG FLL+GLLE++LDYGV+SL+ CFF
Sbjct: 121 VKLLLLKVYGPFLLQGLLEVKLDYGVQSLKRCFF 153

[Close]

BLAST of Cmc08g0218651 vs. ExPASy TrEMBL
Match: A0A059AKJ4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00246 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.0e-20
Identity = 68/163 (41.72%), Postives = 98/163 (60.12%), Query Frame = 0


Query: 1   MQSPIPFKLTQITLRWFLIMNLKF-LIRH----------ASIKPSIDGGGNLHLHFSEAF 60
           MQSP+P +L Q+ L   L++NL+  +++H          A+   +       HL   +  
Sbjct: 42  MQSPVPLELAQVALGRLLVLNLEVPVVKHHLVVVVAVAAAAAAAARHREAQPHLEIPQPL 101

Query: 61  SCETQSKLMATALILEAIDATEGLSNRDIETEMGNGEKSNGDPAMAAFEA-RGKRLGQEN 120
             E + +L+A AL+LEA+D  EGL + D+E E+G GE+ +G PA+AA EA  G   G E 
Sbjct: 102 GGEAEGELVAAALVLEAVDGAEGLGDGDVEDEVGEGEEEDGGPAVAAAEAGGGLGEGAEE 161

Query: 121 ESEEYEEELEKLVKLFLLEIYGAFLLEGLLEMELDYGVESLES 152
           E EE EEE E+ V+L LL + G  LL+GLLE+ELD GV+ L+S
Sbjct: 162 EGEEDEEEEEEAVQLLLLLVDGPLLLQGLLEVELDDGVQRLDS 204

The following BLAST results are available for this feature:

BLAST of Cmc08g0218651 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025559.1	1.1e-67	100.00	hypothetical protein E6C27_scaffold253G00480 [Cucumis melo var. makuwa] >TYK1243...	[more]
KAF5457973.1	4.9e-36	55.84	hypothetical protein F2P56_022042 [Juglans regia]	[more]
QCE15268.1	1.6e-34	53.25	hypothetical protein DEO72_LG11g2277 [Vigna unguiculata]	[more]
KAG2399416.1	2.7e-34	52.60	uncharacterized protein HKW66_Vig0081020 [Vigna angularis]	[more]
KOM41146.1	2.7e-34	52.60	hypothetical protein LR48_Vigan04g134400 [Vigna angularis]	[more]

BLAST of Cmc08g0218651 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0218651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ28	9.2e-73	93.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G485135 PE=4 SV=1	[more]
A0A5D3CMS2	5.2e-68	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A4D6NPL4	7.6e-35	53.25	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2277 PE=4 SV=...	[more]
A0A0L9UEK2	1.3e-34	52.60	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g134400 PE...	[more]
A0A059AKJ4	4.0e-20	41.72	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I00246 PE=4 SV...	[more]

BLAST of Cmc08g0218651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 103..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0218651.1	Cmc08g0218651.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane