Cmc08g0216131 (gene) Melon (Charmono) v1.1

Overview
NameCmc08g0216131
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr08: 5487643 .. 5489804 (-)
RNA-Seq ExpressionCmc08g0216131
SyntenyCmc08g0216131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTCAGTTGCCCTACATGTCGTTTTCTTCTTCGTGTGGGGCTTCAAAACTACACGTCGTCTCTTGCTTTATCGTCTTCCCTAGGTGAAGGCTCGCCGAATAATTTCTCAATCTCTTCCAACGACTTCCCTTTCGTCTCCGGCAAGAAGAAATAGAAGTAAATTAGAGCGATTACAGAGATTCCGGCGAACATGAAGAAAGTCCCACCGATTGTAATCGCTTCGTAGATCGAAATGAAACTCATTGAAATAGCTGCATTCATCAATCTGTTCACCGCTACCCCAATGCTGAGCCCTTGTGCTCTCAATTTCAACGGAAAGATTTCAGTACTGTATACCCATGTAATCGGCGCCATTCCAATCGAGTACAAGGCCACGTACATATAAACGGAGATTATGCTGAGAATCAACGCCCAAGGCAATTCCCCATTTGAATGTTCCACCATCGTTAAACCAAACCCTAACATTAAGTGTGCAACTGCCATCCCCGTTATGCTCGTGAATAGTATCCGCCTTCTTCCGACTCTGTCAAGTAAGAACGTGGCGACGAGGATGAACGACGTTTTGATCACTCCAACGCCGACAGTCGCCAGCAAGAGCTTGTCCTTGCTTGTGATTCCGGCTTTCCTGAAAATTCTTGGGCTGTATAATACAACTGCTTCAATACCTGTAGCGTGTTGGAAGAAATGCAGCCCAATCGCCACCACCAGAATCCAACGCACAGTGGTCGTTGGAGACAATAGCTCTTTCCATACCCCCTCACCGTGAGTTTTTCTATGCATTTTCACGACGTCTTGCTCACAATCTTCGGGGACTCCAGCCGCGAGTTTTATGTCTCTGAATCGAACCACTGCTTCTTCCTCTGTATTCGACACTTTCGATAGAACTTCTCTGGCGTCTTTCAGTCGTCCCTGCAACACCAACCACCGGGGAGATTCCGGCATTCTCAGAACTCCGAGAGCTAAACAGAGGGAAGGAATTGCCGCAACTCCGAGCATCAATCTCCAGCCAATTTTCGCACCCATTTTTCCGAAGCAGTAATTTGAGACATACCCCGTCAAAATGCCGAAGCTAATGCAGAACTCTGGCAAAGAAGTGAGCATTCCTCTCGATGATGGAGCTGAAATTTCTGCAGCGTATACAGGAGCAATCATTAACGCAAAACCCACTCCAATGCCGGTTATACACCTCCCGACCATCAAGATTGCGTAATTTGGGCCGTACCCCATCAGAGTAGCGCCAATCATGAAGATCACCGATGCTAAAACAATCGTGTACCGGCGACCAATTATGTCGGAGGTTCTTCCTGCCGTCAACGATCCCACCAGTGCGCACAGGTTCAAAATTCCGGCTAGAACTTCCACTTGAACATCATTGATTTTCATCTCTTCTTTAATGAATATCATTGCTCCACTCATAACACCCGTATCTGCATAATTGAATTTTCAGGTGCAATTCATTGAACATTTATGTTCTTCTTCTTCAGAACGATAGAAAAGAAAGAACTTACCATAACCAAAGATGATAGATATGATGGAGCCAACGATAGCACATGCCAACGCATATTTATTGATTTTGTTATGAGTTTCAGTAGTGTCTCCTCCATTCGAACCCACCATTGTCATCTCCATTTTGATGGTATCTTCTTCTCCGATCAATGTTTATGTTCTTAACAATTATATACTACAGAAAGAAGAATTGGAACCCATATGATCCAAAAAGATAAGAAAATAAGAAATGAAACTGAGGAAGTCACAAAGACATTGGATTTGAAGACTGAATTGATTTGCTTCTTATTCAAGAATCGATGTATTATTTCTTTTGAATAGATAAGAATGTTTAAGAACTACTTGAAGATCAACGAAAAACAGAAAAGAATGGTAAAGAATAATCTGAATCGAGCTGTCTCGGTTTGGTTCTAAATCTTATTACTCTTCACCTATGAAATTCCAATTTTGTTGTGGTTTGTCATCAAATCAAACTGCTTTTAGTTTCAAAATTTAAGATAAAAATGGTCATTTGTTTGAGTTCCAGTCCTGAGTTCTAGCATGTTGATTGGATACTCCCTAAAATCGGGATGGTGGTTTTGTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTTTATTTAAATTATCAATCAATTAATGTTTGTTTATTTTTTG

mRNA sequence

TTCTTTCAGTTGCCCTACATGTCGTTTTCTTCTTCGTGTGGGGCTTCAAAACTACACGTCGTCTCTTGCTTTATCGTCTTCCCTAGGTGAAGGCTCGCCGAATAATTTCTCAATCTCTTCCAACGACTTCCCTTTCGTCTCCGGCAAGAAGAAATAGAAGTAAATTAGAGCGATTACAGAGATTCCGGCGAACATGAAGAAAGTCCCACCGATTGTAATCGCTTCGTAGATCGAAATGAAACTCATTGAAATAGCTGCATTCATCAATCTGTTCACCGCTACCCCAATGCTGAGCCCTTGTGCTCTCAATTTCAACGGAAAGATTTCAGTACTGTATACCCATGTAATCGGCGCCATTCCAATCGAGTACAAGGCCACGTACATATAAACGGAGATTATGCTGAGAATCAACGCCCAAGGCAATTCCCCATTTGAATGTTCCACCATCGTTAAACCAAACCCTAACATTAAGTGTGCAACTGCCATCCCCGTTATGCTCGTGAATAGTATCCGCCTTCTTCCGACTCTGTCAAGTAAGAACGTGGCGACGAGGATGAACGACGTTTTGATCACTCCAACGCCGACAGTCGCCAGCAAGAGCTTGTCCTTGCTTGTGATTCCGGCTTTCCTGAAAATTCTTGGGCTGTATAATACAACTGCTTCAATACCTGTAGCGTGTTGGAAGAAATGCAGCCCAATCGCCACCACCAGAATCCAACGCACAGTGGTCGTTGGAGACAATAGCTCTTTCCATACCCCCTCACCGTGAGTTTTTCTATGCATTTTCACGACGTCTTGCTCACAATCTTCGGGGACTCCAGCCGCGAGTTTTATGTCTCTGAATCGAACCACTGCTTCTTCCTCTGTATTCGACACTTTCGATAGAACTTCTCTGGCGTCTTTCAGTCGTCCCTGCAACACCAACCACCGGGGAGATTCCGGCATTCTCAGAACTCCGAGAGCTAAACAGAGGGAAGGAATTGCCGCAACTCCGAGCATCAATCTCCAGCCAATTTTCGCACCCATTTTTCCGAAGCAGTAATTTGAGACATACCCCGTCAAAATGCCGAAGCTAATGCAGAACTCTGGCAAAGAAGTGAGCATTCCTCTCGATGATGGAGCTGAAATTTCTGCAGCGTATACAGGAGCAATCATTAACGCAAAACCCACTCCAATGCCGGTTATACACCTCCCGACCATCAAGATTGCGTAATTTGGGCCGTACCCCATCAGAGTAGCGCCAATCATGAAGATCACCGATGCTAAAACAATCGTGTACCGGCGACCAATTATGTCGGAGGTTCTTCCTGCCGTCAACGATCCCACCAGTGCGCACAGGTGCAATTCATTGAACATTTATGTTCTTCTTCTTCAGAACGATAGAAAAGAAAGAACTTACCATAACCAAAGATGATAGATATGATGGAGCCAACGATAGCACATGCCAACGCATATTTATTGATTTTGTTATGAGTTTCAGTAGTGTCTCCTCCATTCGAACCCACCATTGTCATCTCCATTTTGATGGTATCTTCTTCTCCGATCAATGTTTATGTTCTTAACAATTATATACTACAGAAAGAAGAATTGGAACCCATATGATCCAAAAAGATAAGAAAATAAGAAATGAAACTGAGGAAGTCACAAAGACATTGGATTTGAAGACTGAATTGATTTGCTTCTTATTCAAGAATCGATGTATTATTTCTTTTGAATAGATAAGAATGTTTAAGAACTACTTGAAGATCAACGAAAAACAGAAAAGAATGGTAAAGAATAATCTGAATCGAGCTGTCTCGGTTTGGTTCTAAATCTTATTACTCTTCACCTATGAAATTCCAATTTTGTTGTGGTTTGTCATCAAATCAAACTGCTTTTAGTTTCAAAATTTAAGATAAAAATGGTCATTTGTTTGAGTTCCAGTCCTGAGTTCTAGCATGTTGATTGGATACTCCCTAAAATCGGGATGGTGGTTTTGTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTTTATTTAAATTATCAATCAATTAATGTTTGTTTATTTTTTG

Coding sequence (CDS)

ATGCTGAGAATCAACGCCCAAGGCAATTCCCCATTTGAATGTTCCACCATCGTTAAACCAAACCCTAACATTAAGTGTGCAACTGCCATCCCCGTTATGCTCGTGAATAGTATCCGCCTTCTTCCGACTCTGTCAAGTAAGAACGTGGCGACGAGGATGAACGACGTTTTGATCACTCCAACGCCGACAGTCGCCAGCAAGAGCTTGTCCTTGCTTGTGATTCCGGCTTTCCTGAAAATTCTTGGGCTGTATAATACAACTGCTTCAATACCTGTAGCGTGTTGGAAGAAATGCAGCCCAATCGCCACCACCAGAATCCAACGCACAGTGGTCGTTGGAGACAATAGCTCTTTCCATACCCCCTCACCGTGA

Protein sequence

MLRINAQGNSPFECSTIVKPNPNIKCATAIPVMLVNSIRLLPTLSSKNVATRMNDVLITPTPTVASKSLSLLVIPAFLKILGLYNTTASIPVACWKKCSPIATTRIQRTVVVGDNSSFHTPSP
Homology
[Close]
BLAST of Cmc08g0216131 vs. NCBI nr
Match: KDO79507.1 (hypothetical protein CISIN_1g032846mg [Citrus sinensis])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 76/124 (61.29%), Postives = 86/124 (69.35%), Query Frame = 0 

Query: 1   MLRINAQGNSPFECSTIVKPNPNIKCATAIPVMLVNSIRLLPTLSSKNVATRMNDVLITP 60
           MLR  A  +S FE S  VKP P ++  T IP +L +   LLPTLSSK V   MN VL++P
Sbjct: 1   MLRTRAHFDSCFEASAKVKPKPTVESITTIPAVLTSKSFLLPTLSSKKVEKVMNKVLVSP 60

Query: 61  TPTVASKSLSLLVIPAFLKILGLYNTTASIPVACWKKCSPIATTRIQRTVVVG-DNSSFH 120
           TP VAS + SLL+IPAFLKILG YNT ASIPVAC KKC PIA T+I RT  VG   SSFH
Sbjct: 61  TPIVASNNFSLLLIPAFLKILGPYNTMASIPVACSKKCIPIAATKILRTAGVGRKKSSFH 120

Query: 121 TPSP 124
           TP P
Sbjct: 121 TPLP 124

[Close]
BLAST of Cmc08g0216131 vs. NCBI nr
Match: GAV69501.1 (hypothetical protein CFOL_v3_13002 [Cephalotus follicularis])

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-24
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 0 

Query: 17  IVKPNPNIKCATAIPVMLVNSIRLLPTLSSKNVATRMNDVLITPTPTVASKSLSLLVIPA 76
           +VK NPN+     IP +LVN+ RL PTLSSKNVA  +N   ++PTPTVASKSLSLLV PA
Sbjct: 1   MVKLNPNVVSVNTIPAVLVNNKRLRPTLSSKNVAININVAFVSPTPTVASKSLSLLVTPA 60

Query: 77  FLKILGLYNTTASIPVACWKKCSPIATTRIQRTVVVGDN-SSFHTPSP 124
           FLKILGLY TTAS+PV C KK  PIA  + +RT   G N SSFHTPSP
Sbjct: 61  FLKILGLYRTTASMPVVCSKKWIPIAAIKTRRTDGEGLNKSSFHTPSP 108

[Close]
BLAST of Cmc08g0216131 vs. NCBI nr
Match: GEZ03882.1 (pentatricopeptide repeat-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 101.7 bits (252), Expect = 4.7e-18
Identity = 60/97 (61.86%), Postives = 67/97 (69.07%), Query Frame = 0 

Query: 17  IVKPNPNIKCATAIPVMLVNSIRLLPTLSSKNVATRMNDVLITPTPTVASKSLSLLVIPA 76
           +VKPNPN   AT IP  LVN    LP L  KNV   MN VL+TPTP VA+KSLSLLV PA
Sbjct: 1   MVKPNPNPTRATIIPPTLVNRSFRLPALLIKNVDAVMNIVLVTPTPMVANKSLSLLVTPA 60

Query: 77  FLKILGLYNTTASIPVACWKKCSPIATTRIQRTVVVG 114
             KI GLY  TAS+PVAC KKC+PIA +R  +T  VG
Sbjct: 61  CKKICGLYTITASMPVACSKKCTPIAASRTHQTCGVG 97

[Close]
BLAST of Cmc08g0216131 vs. NCBI nr
Match: KVH93235.1 (hypothetical protein Ccrd_004710 [Cynara cardunculus var. scolymus])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-15
Identity = 55/95 (57.89%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 30  IPVMLVNSIRLLPTLSSKNVATRMNDVLITPTPTVASKSLSLLVIPAFLKILGLYNTTAS 89
           +P  L N     PTLS KNVATRMN V   PT  VAS     L IPAF KI GLYNTTAS
Sbjct: 1   MPATLDNKSGRRPTLSRKNVATRMNMVFTNPTAMVASSFGVSLTIPAFSKIFGLYNTTAS 60

Query: 90  IPVACWKKCSPIATTRIQRTVVVG-DNSSFHTPSP 124
           IP+ACWKK  P A  ++ RTV VG  ++S H PSP
Sbjct: 61  IPLACWKKWIPTAAIKMWRTVGVGWTSNSLHIPSP 95

[Close]
BLAST of Cmc08g0216131 vs. NCBI nr
Match: CAA2617875.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-12
Identity = 48/95 (50.53%), Postives = 59/95 (62.11%), Query Frame = 0 

Query: 30  IPVMLVNSIRLLPTLSSKNVATRMNDVLITPTPTVASKSLSLLVIPAFLKILGLYNTTAS 89
           IP  LV+S    PT S + VATRM + L+TPT TV       +++PAF    GLY+TT S
Sbjct: 3   IPPALVSSNGRRPTRSRRKVATRMKEALVTPTATVTPSVFVFVLMPAFSNTRGLYSTTES 62

Query: 90  IPVACWKKCSPIATTRIQRTVVVG-DNSSFHTPSP 124
           IP ACWK C+P A   I+R V VG  +SS  TPSP
Sbjct: 63  IPEACWKNCNPSAARTIRRMVGVGVISSSLQTPSP 97

[Close]
BLAST of Cmc08g0216131 vs. ExPASy TrEMBL
Match: A0A067GVM4 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032846mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 76/124 (61.29%), Postives = 86/124 (69.35%), Query Frame = 0 

Query: 1   MLRINAQGNSPFECSTIVKPNPNIKCATAIPVMLVNSIRLLPTLSSKNVATRMNDVLITP 60
           MLR  A  +S FE S  VKP P ++  T IP +L +   LLPTLSSK V   MN VL++P
Sbjct: 1   MLRTRAHFDSCFEASAKVKPKPTVESITTIPAVLTSKSFLLPTLSSKKVEKVMNKVLVSP 60

Query: 61  TPTVASKSLSLLVIPAFLKILGLYNTTASIPVACWKKCSPIATTRIQRTVVVG-DNSSFH 120
           TP VAS + SLL+IPAFLKILG YNT ASIPVAC KKC PIA T+I RT  VG   SSFH
Sbjct: 61  TPIVASNNFSLLLIPAFLKILGPYNTMASIPVACSKKCIPIAATKILRTAGVGRKKSSFH 120

Query: 121 TPSP 124
           TP P
Sbjct: 121 TPLP 124

[Close]
BLAST of Cmc08g0216131 vs. ExPASy TrEMBL
Match: A0A1Q3BNA1 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_13002 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 0 

Query: 17  IVKPNPNIKCATAIPVMLVNSIRLLPTLSSKNVATRMNDVLITPTPTVASKSLSLLVIPA 76
           +VK NPN+     IP +LVN+ RL PTLSSKNVA  +N   ++PTPTVASKSLSLLV PA
Sbjct: 1   MVKLNPNVVSVNTIPAVLVNNKRLRPTLSSKNVAININVAFVSPTPTVASKSLSLLVTPA 60

Query: 77  FLKILGLYNTTASIPVACWKKCSPIATTRIQRTVVVGDN-SSFHTPSP 124
           FLKILGLY TTAS+PV C KK  PIA  + +RT   G N SSFHTPSP
Sbjct: 61  FLKILGLYRTTASMPVVCSKKWIPIAAIKTRRTDGEGLNKSSFHTPSP 108

[Close]
BLAST of Cmc08g0216131 vs. ExPASy TrEMBL
Match: A0A124SCB1 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004710 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 55/95 (57.89%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 30  IPVMLVNSIRLLPTLSSKNVATRMNDVLITPTPTVASKSLSLLVIPAFLKILGLYNTTAS 89
           +P  L N     PTLS KNVATRMN V   PT  VAS     L IPAF KI GLYNTTAS
Sbjct: 1   MPATLDNKSGRRPTLSRKNVATRMNMVFTNPTAMVASSFGVSLTIPAFSKIFGLYNTTAS 60

Query: 90  IPVACWKKCSPIATTRIQRTVVVG-DNSSFHTPSP 124
           IP+ACWKK  P A  ++ RTV VG  ++S H PSP
Sbjct: 61  IPLACWKKWIPTAAIKMWRTVGVGWTSNSLHIPSP 95

[Close]
BLAST of Cmc08g0216131 vs. ExPASy TrEMBL
Match: A0A7I8IKA2 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_03004036 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 48/95 (50.53%), Postives = 59/95 (62.11%), Query Frame = 0 

Query: 30  IPVMLVNSIRLLPTLSSKNVATRMNDVLITPTPTVASKSLSLLVIPAFLKILGLYNTTAS 89
           IP  LV+S    PT S + VATRM + L+TPT TV       +++PAF    GLY+TT S
Sbjct: 3   IPPALVSSNGRRPTRSRRKVATRMKEALVTPTATVTPSVFVFVLMPAFSNTRGLYSTTES 62

Query: 90  IPVACWKKCSPIATTRIQRTVVVG-DNSSFHTPSP 124
           IP ACWK C+P A   I+R V VG  +SS  TPSP
Sbjct: 63  IPEACWKNCNPSAARTIRRMVGVGVISSSLQTPSP 97

[Close]
BLAST of Cmc08g0216131 vs. ExPASy TrEMBL
Match: A0A7I8K8Y4 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_03004373 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 0 

Query: 30  IPVMLVNSIRLLPTLSSKNVATRMNDVLITPTPTVASKSLSLLVIPAFLKILGLYNTTAS 89
           +P  LV+S    PT S + VATRM + L+TPT TV       +++PAF    GLY+TT S
Sbjct: 3   MPPALVSSNGRRPTRSRRKVATRMKEALVTPTATVTPSVFVFVLMPAFSNTRGLYSTTES 62

Query: 90  IPVACWKKCSPIATTRIQRTVVVG-DNSSFHTPSP 124
           IP ACWK C+P A   I+R V VG  +SS  TPSP
Sbjct: 63  IPEACWKNCNPSAARTIRRMVGVGVISSSLQTPSP 97

The following BLAST results are available for this feature:
BLAST of Cmc08g0216131 vs. NCBI nr
Match NameE-valueIdentityDescription
KDO79507.12.5e-2761.29hypothetical protein CISIN_1g032846mg [Citrus sinensis][more]
GAV69501.12.6e-2464.81hypothetical protein CFOL_v3_13002 [Cephalotus follicularis][more]
GEZ03882.14.7e-1861.86pentatricopeptide repeat-containing protein [Tanacetum cinerariifolium][more]
KVH93235.16.4e-1557.89hypothetical protein Ccrd_004710 [Cynara cardunculus var. scolymus][more]
CAA2617875.13.9e-1250.53unnamed protein product [Spirodela intermedia][more]
BLAST of Cmc08g0216131 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc08g0216131 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A067GVM41.2e-2761.29Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032846mg PE=4 SV=1[more]
A0A1Q3BNA11.2e-2464.81Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_13002 PE=4... [more]
A0A124SCB13.1e-1557.89Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004... [more]
A0A7I8IKA21.9e-1250.53Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_03004036 PE=4 SV... [more]
A0A7I8K8Y44.2e-1249.47Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_03004373 PE=4 SV... [more]
BLAST of Cmc08g0216131 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc08g0216131.1Cmc08g0216131.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane