Cmc07g0202381 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0202381
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Endonuclease III homolog
Location	CMiso1.1chr07: 24481611 .. 24483942 (-)
RNA-Seq Expression	Cmc07g0202381
Synteny	Cmc07g0202381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGTCGAACAATTGAAAAAAAAGATCTTCCTTTCAAACATCCTATTCTCTGGTTGTACTTATTTCCACGTAATTCCTTCCATTAGAACGTCATAACAACTATCACATGATTATGAATTTAAAAAAATTGATGCAATTCAAGTTTCATCTTCATCAAGTAATTGGTGATATCAAAGAAAGAAGACAGAGAGAGCCAAGTACCCATCTTGATCAACGGTTTCCAAAAAGCAAAATTTTGGAACTTGAGCGTGGAAAAATGGACCCTTTTTAGATTGGATTGTTCTACTTCGACCCATTACCATGTTTTTTGCTTGTCCTATTCGAATACCGGCGCTTTCAATCACATTTGCTCGAAGAATTACATGCAGCGCCATGTCGAAAGGAAGTTCGTCCTCCTTGCCAACAAGTTCGAACGAAGTCCCTCCTAACCCGGGTCCTTAAACTCTTCTACTCGATCATGTTTCATTTTCCGTTTAATTCTTCCGTCGATGTTAATCTTAAGGGTATTTCTTAACTGGGTTTTCACTGATTTTAGGAATTTCGAGTGTTAAGTCCTCCAATGGCGTTTCTGAGCCTGAAACTCGGGTATTTGTGAGGAGAAGAGTGAAAAAGATTGCAGAAAGTCAAGATAGTGGGTTTGAAGTTGAACCTAAAATCAACACTAAAGTAAGACCTTCACCATTTTTCTTTTCATCTTCCAGATATATCTCTATCCTGGAAAGTGGGCCTTTTTAGCTTTAGATGGTCGTTTTTATTGTGGTTACCTTTGTTAAGACTATACACGCATATTGTTTTTCTTGGGTTTTGGGTTTTTACTCTCTGTGTGTCGCTCCCTGTTTCACTCATAACTTAATTGAAGCATTCAGTTAATGCTATATAAGCTCATAAACATTCATAGCCTTGCCAGCATTGTATTCTAGAAACTTGTTTGATTAGATTATAAATCCTCTATAGATAAAAGTCTTACAATGGCGAAAGTTAATTAGTAGAACTTCTTATCTTTTCACTGTGCAGCGCTCCTTTCCTCCTAATATTGAAGATTTTGCATTCAAAAGAACAAAGGATTCCCCTGGATCAAGTAATTCTTACCTTAGTAGCACTTTTGCTTGTATGAATTTAGCATTTCTACTGGATGACCAATGCATCCAAATTATGAGAACCCTTCCATCTGACATCGTTTTTTATGAATTGTCACTGCAGGGGAGTCAAAGCCTCCTCCAGATCTTCTTCTCAACGGAATTGAAGGTTCTACTCCAACTACACATAAAGGCAATGCAGGACGAAGTGAGTGCTAATTTTTTTTTCTCCAGGGGAATTTATGCTGTGTATGCATTTAGAAGAGATTTAATGTGGCAAGTCTCTGATTAAGAGAGTACATTGCCCCCAGAATTTTTACTAGTTAATGTCAGGTTAGATAAGTATTTAACGTAATTATTAGATAAGTTTCCTAAGAAAAACAATGAATTATGGTATAGGTAAACCACCTGAGAATTGGGAAAAAGTTCTTAAAGGAATTCGGGAAATGAGGTCCTCTGAAGAAGCTCCAGTAGATACCATGGGATGTGGACGAGCTGGTAGTACTCTTCCTCCCAAGGTAAATTCCATATTTTGAATGGACTCCCCAGTTTTACTTAGCATAGTTGTATACTTCTTTTCAAGATCTATTATCGTCTCAAATTTGAACTTAAAATTTTTAGAGCCACAATGGATGGTTACTTTTTAACCTTTTGTTTCCTATCTTTCTTCGCTTGGTGCCAAAATAAATCTTTCAAGTTATCCTAAATACCAAAATGAATGTTCTCTGGCACGAACATTTTTTTTTTCTTTTGATGTACCATGAAATCTATGAATATATCAATAATCAGATGTGAAGATGACATGATAACGCTCTTATTACCAATCAGTAACCTGTTGGTCTTTAGAAGTAAATACCTTTTGAATGATAGAGATTATGGTGGATCTGGCCACCATAAAGTTTTCATCCCAGATTTAACAGGGGCACGAAGGAGTTAGCTAGGTGCTTTAGTAACACAATGCACGTTCTTTTTCTTTCTTTCTTTTTTTTTTATATGGCCTTGCGGTCACTATATACTGATAACAGAAGACTCATTGCTCTTTACATAATTGTATTTGATATCTACAGCATTTTTAAACCAATAACTTTTCATTTACTTTATTTTTATTAGGAAAGAAGATTCGCTGTCTTGGCATCTTCTCTTCTCTCAAGCCAAACCAAAGACCACGTGACTCATGGCAAGTTCTTGTACTATGAAATCATTGGTTGATTGAGTATTTTAATTTAACACACTTTCCTGGACTGTTTCTGAAAATC

mRNA sequence

CTAGTCGAACAATTGAAAAAAAAGATCTTCCTTTCAAACATCCTATTCTCTGGTTGTACTTATTTCCACGTAATTCCTTCCATTAGAACGTCATAACAACTATCACATGATTATGAATTTAAAAAAATTGATGCAATTCAAGTTTCATCTTCATCAAGTAATTGGTGATATCAAAGAAAGAAGACAGAGAGAGCCAAGTACCCATCTTGATCAACGGTTTCCAAAAAGCAAAATTTTGGAACTTGAGCGTGGAAAAATGGACCCTTTTTAGATTGGATTGTTCTACTTCGACCCATTACCATGTTTTTTGCTTGTCCTATTCGAATACCGGCGCTTTCAATCACATTTGCTCGAAGAATTACATGCAGCGCCATGTCGAAAGGAAGTTCGTCCTCCTTGCCAACAAGTTCGAACGAAGTCCCTCCTAACCCGGGAATTTCGAGTGTTAAGTCCTCCAATGGCGTTTCTGAGCCTGAAACTCGGGTATTTGTGAGGAGAAGAGTGAAAAAGATTGCAGAAAGTCAAGATAGTGGGTTTGAAGTTGAACCTAAAATCAACACTAAACGCTCCTTTCCTCCTAATATTGAAGATTTTGCATTCAAAAGAACAAAGGATTCCCCTGGATCAAGGGAGTCAAAGCCTCCTCCAGATCTTCTTCTCAACGGAATTGAAGGTTCTACTCCAACTACACATAAAGGCAATGCAGGACGAAGTAAACCACCTGAGAATTGGGAAAAAGTTCTTAAAGGAATTCGGGAAATGAGGTCCTCTGAAGAAGCTCCAGTAGATACCATGGGATGTGGACGAGCTGGTAGTACTCTTCCTCCCAAGGAAAGAAGATTCGCTGTCTTGGCATCTTCTCTTCTCTCAAGCCAAACCAAAGACCACGTGACTCATGGCAAGTTCTTGTACTATGAAATCATTGGTTGATTGAGTATTTTAATTTAACACACTTTCCTGGACTGTTTCTGAAAATC

Coding sequence (CDS)

ATGTTTTTTGCTTGTCCTATTCGAATACCGGCGCTTTCAATCACATTTGCTCGAAGAATTACATGCAGCGCCATGTCGAAAGGAAGTTCGTCCTCCTTGCCAACAAGTTCGAACGAAGTCCCTCCTAACCCGGGAATTTCGAGTGTTAAGTCCTCCAATGGCGTTTCTGAGCCTGAAACTCGGGTATTTGTGAGGAGAAGAGTGAAAAAGATTGCAGAAAGTCAAGATAGTGGGTTTGAAGTTGAACCTAAAATCAACACTAAACGCTCCTTTCCTCCTAATATTGAAGATTTTGCATTCAAAAGAACAAAGGATTCCCCTGGATCAAGGGAGTCAAAGCCTCCTCCAGATCTTCTTCTCAACGGAATTGAAGGTTCTACTCCAACTACACATAAAGGCAATGCAGGACGAAGTAAACCACCTGAGAATTGGGAAAAAGTTCTTAAAGGAATTCGGGAAATGAGGTCCTCTGAAGAAGCTCCAGTAGATACCATGGGATGTGGACGAGCTGGTAGTACTCTTCCTCCCAAGGAAAGAAGATTCGCTGTCTTGGCATCTTCTCTTCTCTCAAGCCAAACCAAAGACCACGTGACTCATGGCAAGTTCTTGTACTATGAAATCATTGGTTGA

Protein sequence

MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHGKFLYYEIIG

Homology

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BLAST of Cmc07g0202381 vs. NCBI nr
Match: KAA0044590.1 (endonuclease III-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60
           MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET
Sbjct: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60

Query: 61  RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120
           RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL
Sbjct: 61  RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120

Query: 121 NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180
           NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR
Sbjct: 121 NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180

Query: 181 FAVLASSLLSSQTKDHVTHG 201
           FAVLASSLLSSQTKDHVTHG
Sbjct: 181 FAVLASSLLSSQTKDHVTHG 200

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BLAST of Cmc07g0202381 vs. NCBI nr
Match: XP_008453986.1 (PREDICTED: endonuclease III homolog 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 386.7 bits (992), Expect = 1.2e-103
Identity = 198/203 (97.54%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60
           MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET
Sbjct: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60

Query: 61  RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120
           RVFVRRRVKKIAESQDSGFEVEPKI+TKRS PPNIEDFAFKRTKDSPGSRESKPPPDLLL
Sbjct: 61  RVFVRRRVKKIAESQDSGFEVEPKIDTKRSCPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120

Query: 121 NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180
           NGIEGSTPTTHKGNAGR KPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR
Sbjct: 121 NGIEGSTPTTHKGNAGRGKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180

Query: 181 FAVLASSLLSSQTKDHVTHGKFL 204
           FAVLASSLLSSQTKDHVTHG  L
Sbjct: 181 FAVLASSLLSSQTKDHVTHGAAL 203

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BLAST of Cmc07g0202381 vs. NCBI nr
Match: XP_004152104.1 (endonuclease III homolog 1, chloroplastic [Cucumis sativus] >KGN53081.2 hypothetical protein Csa_014884 [Cucumis sativus])

HSP 1 Score: 366.3 bits (939), Expect = 1.7e-97
Identity = 190/203 (93.60%), Postives = 192/203 (94.58%), Query Frame = 0


Query: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60
           MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET
Sbjct: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60

Query: 61  RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120
           RVFVRRRVKKIAESQDSGFEVEPKI+TKRS PPNIEDFAFKRTKDSPGSR+ KPP DLLL
Sbjct: 61  RVFVRRRVKKIAESQDSGFEVEPKIDTKRSCPPNIEDFAFKRTKDSPGSRKLKPPLDLLL 120

Query: 121 NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180
           NGIE S PTTHKG A R KPP NWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR
Sbjct: 121 NGIEDSNPTTHKGKAERGKPPVNWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180

Query: 181 FAVLASSLLSSQTKDHVTHGKFL 204
           FAVLASSLLSSQTKDHVTHG  L
Sbjct: 181 FAVLASSLLSSQTKDHVTHGAAL 203

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BLAST of Cmc07g0202381 vs. NCBI nr
Match: TYK16994.1 (endonuclease III-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 6.0e-90
Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 25  MSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQDSGFEVEPK 84
           MSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQDSGFEVEPK
Sbjct: 1   MSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQDSGFEVEPK 60

Query: 85  INTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRSKPPENW 144
           I+TKRS PPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGR KPPENW
Sbjct: 61  IDTKRSCPPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRGKPPENW 120

Query: 145 EKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHGKFL 204
           EKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHG  L
Sbjct: 121 EKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHGAAL 179

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BLAST of Cmc07g0202381 vs. NCBI nr
Match: XP_038878188.1 (endonuclease III homolog 2, chloroplastic-like isoform X3 [Benincasa hispida])

HSP 1 Score: 318.9 bits (816), Expect = 3.2e-83
Identity = 169/203 (83.25%), Postives = 175/203 (86.21%), Query Frame = 0


Query: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60
           M FACPIR PA SITFARRITCS MSKGS SSLPTSSNEVPPNPGIS VKSSNGVSE ET
Sbjct: 1   MIFACPIRTPAFSITFARRITCSGMSKGSLSSLPTSSNEVPPNPGISGVKSSNGVSESET 60

Query: 61  RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120
           RVFVRRRVKK AE Q SG EVEPK++ KR  PPNIEDFAFKRTKDSPGSR+SK P D LL
Sbjct: 61  RVFVRRRVKKNAEGQVSGLEVEPKVDAKRCCPPNIEDFAFKRTKDSPGSRKSKLPLDPLL 120

Query: 121 NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180
           NGIE S PT  KG A   KPP NWEKVL+GIR+MRSSEEAPVDTMGCG+AGSTLPPKERR
Sbjct: 121 NGIEVSNPTRQKGIAEGGKPPVNWEKVLEGIRKMRSSEEAPVDTMGCGQAGSTLPPKERR 180

Query: 181 FAVLASSLLSSQTKDHVTHGKFL 204
           FAVLASSLLSSQTKDHVTHG  L
Sbjct: 181 FAVLASSLLSSQTKDHVTHGAAL 203

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BLAST of Cmc07g0202381 vs. ExPASy Swiss-Prot
Match: B9DFZ0 (Endonuclease III homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NTH2 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-23
Identity = 69/154 (44.81%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 47  SSVKSSNGVSEPETRVFVR-RRVKK-IAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTK 106
           S+ ++++G SE ETRV +R +R+K+   E        E K        P+IED  +K+T 
Sbjct: 47  SNSEAAHGASESETRVSLRKKRIKQDDLEPVKKCSARETKARKDMCGLPDIEDSPYKKTN 106

Query: 107 DSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDT 166
            +  SR  K   +  +   E S   +    AG   PPENWEKVL+GIR+M+ SEEAPV+ 
Sbjct: 107 GTASSRTRK--LNSYIKSTEASPSASSIKTAGLGIPPENWEKVLEGIRKMKPSEEAPVNA 166

Query: 167 MGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVT 199
           + C R GS LPPKERRF VL  +LLSSQTK+H+T
Sbjct: 167 VECDRTGSFLPPKERRFYVLIGTLLSSQTKEHIT 198

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BLAST of Cmc07g0202381 vs. ExPASy Swiss-Prot
Match: Q9SIC4 (Endonuclease III homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NTH1 PE=2 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 8.6e-23
Identity = 81/185 (43.78%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 16  FARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQ 75
           F R  T S    G+ SS    S +       S+ + + G S  ETRV+ R++  K    +
Sbjct: 20  FYRIGTMSRQIHGAVSSSKHISLKTQHPLSDSNSELAYGASGSETRVYTRKKRLKQEPFE 79

Query: 76  DSGFEVEPKINT-KRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGN 135
                    +NT K    P+IEDFA+K+T  SP S  S           E S   T    
Sbjct: 80  PLEKYSGKGVNTHKLCGLPDIEDFAYKKTIGSPSSSRS----------TETSITVTSVKT 139

Query: 136 AGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTK 195
           AG   PPENW +VL+GIR+MRSSE+APVD+MGC +AGS LPP ERRFAVL  +LLSSQTK
Sbjct: 140 AG--YPPENWVEVLEGIRQMRSSEDAPVDSMGCDKAGSFLPPTERRFAVLLGALLSSQTK 192

Query: 196 DHVTH 200
           D V +
Sbjct: 200 DQVNN 192

[Close]

BLAST of Cmc07g0202381 vs. ExPASy Swiss-Prot
Match: A7M7B9 (Endonuclease III-like protein 1 OS=Gallus gallus OX=9031 GN=NTHL1 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 101 KRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEA 160
           +RT+  P + E++P P+                + G    PENW++ L+ IREMR   +A
Sbjct: 34  RRTRRVPIAYEAEPKPE----------------SPGPKWEPENWQQQLERIREMRRHRDA 93

Query: 161 PVDTMGCGRAGST-LPPKERRFAVLASSLLSSQTKDHVTHGKFL 204
           PVD MG  +   T  PP+  R+ VL S +LSSQTKD VT    L
Sbjct: 94  PVDEMGVDKCYDTSAPPQVMRYQVLLSLMLSSQTKDQVTSAAML 121

[Close]

BLAST of Cmc07g0202381 vs. ExPASy Swiss-Prot
Match: P78549 (Endonuclease III-like protein 1 OS=Homo sapiens OX=9606 GN=NTHL1 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 44/109 (40.37%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 96  EDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRSKP---PENWEKVLKGIR 155
           E  A  R   SP  R  K     L    EGS     +G      P   P++W++ L  IR
Sbjct: 43  EAAAEARKSHSPVKRPRK--AQRLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIR 102

Query: 156 EMRSSEEAPVDTMGCGRA-GSTLPPKERRFAVLASSLLSSQTKDHVTHG 201
            MR+ ++APVD +G      S+ PPK RR+ VL S +LSSQTKD VT G
Sbjct: 103 AMRNKKDAPVDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQVTAG 149

[Close]

BLAST of Cmc07g0202381 vs. ExPASy Swiss-Prot
Match: O35980 (Endonuclease III-like protein 1 OS=Mus musculus OX=10090 GN=Nthl1 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-08
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 141 PENWEKVLKGIREMRSSEEAPVDTMGCGRA-GSTLPPKERRFAVLASSLLSSQTKDHVTH 200
           P+NW++ L  IR MRS ++APVD +G      ++  PK RR+ VL S +LSSQTKD VT 
Sbjct: 77  PQNWQQQLANIRIMRSKKDAPVDQLGAEHCYDASASPKVRRYQVLLSLMLSSQTKDQVTA 136

[Close]

BLAST of Cmc07g0202381 vs. ExPASy TrEMBL
Match: A0A5A7TN21 (Endonuclease III homolog OS=Cucumis melo var. makuwa OX=1194695 GN=NTH1 PE=3 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 8.4e-106
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60
           MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET
Sbjct: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60

Query: 61  RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120
           RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL
Sbjct: 61  RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120

Query: 121 NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180
           NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR
Sbjct: 121 NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180

Query: 181 FAVLASSLLSSQTKDHVTHG 201
           FAVLASSLLSSQTKDHVTHG
Sbjct: 181 FAVLASSLLSSQTKDHVTHG 200

[Close]

BLAST of Cmc07g0202381 vs. ExPASy TrEMBL
Match: A0A1S3BX24 (Endonuclease III homolog OS=Cucumis melo OX=3656 GN=LOC103494544 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.0e-104
Identity = 198/203 (97.54%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60
           MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET
Sbjct: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60

Query: 61  RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120
           RVFVRRRVKKIAESQDSGFEVEPKI+TKRS PPNIEDFAFKRTKDSPGSRESKPPPDLLL
Sbjct: 61  RVFVRRRVKKIAESQDSGFEVEPKIDTKRSCPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120

Query: 121 NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180
           NGIEGSTPTTHKGNAGR KPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR
Sbjct: 121 NGIEGSTPTTHKGNAGRGKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180

Query: 181 FAVLASSLLSSQTKDHVTHGKFL 204
           FAVLASSLLSSQTKDHVTHG  L
Sbjct: 181 FAVLASSLLSSQTKDHVTHGAAL 203

[Close]

BLAST of Cmc07g0202381 vs. ExPASy TrEMBL
Match: A0A0A0KU72 (ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015140 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.4e-98
Identity = 190/203 (93.60%), Postives = 192/203 (94.58%), Query Frame = 0


Query: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60
           MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET
Sbjct: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPET 60

Query: 61  RVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLL 120
           RVFVRRRVKKIAESQDSGFEVEPKI+TKRS PPNIEDFAFKRTKDSPGSR+ KPP DLLL
Sbjct: 61  RVFVRRRVKKIAESQDSGFEVEPKIDTKRSCPPNIEDFAFKRTKDSPGSRKLKPPLDLLL 120

Query: 121 NGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180
           NGIE S PTTHKG A R KPP NWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR
Sbjct: 121 NGIEDSNPTTHKGKAERGKPPVNWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERR 180

Query: 181 FAVLASSLLSSQTKDHVTHGKFL 204
           FAVLASSLLSSQTKDHVTHG  L
Sbjct: 181 FAVLASSLLSSQTKDHVTHGAAL 203

[Close]

BLAST of Cmc07g0202381 vs. ExPASy TrEMBL
Match: A0A5D3D186 (Endonuclease III homolog OS=Cucumis melo var. makuwa OX=1194695 GN=NTH1 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.9e-90
Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 25  MSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQDSGFEVEPK 84
           MSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQDSGFEVEPK
Sbjct: 1   MSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQDSGFEVEPK 60

Query: 85  INTKRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRSKPPENW 144
           I+TKRS PPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGR KPPENW
Sbjct: 61  IDTKRSCPPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRGKPPENW 120

Query: 145 EKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHGKFL 204
           EKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHG  L
Sbjct: 121 EKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTHGAAL 179

[Close]

BLAST of Cmc07g0202381 vs. ExPASy TrEMBL
Match: A0A6J1CTU5 (Endonuclease III homolog OS=Momordica charantia OX=3673 GN=LOC111014717 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.2e-71
Identity = 149/202 (73.76%), Postives = 165/202 (81.68%), Query Frame = 0


Query: 1   MFFACPIRIPALSITFARRITCSAMSKGSSSSLPTSSNEVP-PNPGISSVKSSNGVSEPE 60
           MF  C I  P L I FARRITC +MSKGS SSLPTSSN+ P  + GIS V+SSNGVSE E
Sbjct: 1   MFLTCAITTPTLPIAFARRITCKSMSKGSLSSLPTSSNKFPQDHSGISGVRSSNGVSESE 60

Query: 61  TRVFVRRRVKKIAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTKDSPGSRESKPPP-DL 120
           TRVFVRRRVKK AE QDSG +VEP ++ KR  PP+IEDFAFKRTK+SPGS +SKPPP D 
Sbjct: 61  TRVFVRRRVKKNAEVQDSGPQVEPNVDAKRCCPPDIEDFAFKRTKESPGSWKSKPPPLDP 120

Query: 121 LLNGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKE 180
           L+ GIE S P   KG A R KPP NWEK+L+GIREMRSSE+APVDTMGCG+A STLPPKE
Sbjct: 121 LVTGIEVSNPIRQKGIAERGKPPVNWEKILEGIREMRSSEDAPVDTMGCGQAASTLPPKE 180

Query: 181 RRFAVLASSLLSSQTKDHVTHG 201
           RRF+VLASSLLSSQTKDHVTHG
Sbjct: 181 RRFSVLASSLLSSQTKDHVTHG 202

[Close]

BLAST of Cmc07g0202381 vs. TAIR 10
Match: AT2G31450.2 (DNA glycosylase superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 74/155 (47.74%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 46  ISSVKSSNGVSEPETRVFVRRRVKKIAESQDSGFEVEPKINT-KRSFPPNIEDFAFKRTK 105
           +S   S+ G S  ETRV+ R++  K    +         +NT K    P+IEDFA+K+T 
Sbjct: 48  LSDSNSAYGASGSETRVYTRKKRLKQEPFEPLEKYSGKGVNTHKLCGLPDIEDFAYKKTI 107

Query: 106 DSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDT 165
            SP S  S           E S   T    AG   PPENW +VL+GIR+MRSSE+APVD+
Sbjct: 108 GSPSSSRS----------TETSITVTSVKTAG--YPPENWVEVLEGIRQMRSSEDAPVDS 167

Query: 166 MGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVTH 200
           MGC +AGS LPP ERRFAVL  +LLSSQTKD V +
Sbjct: 168 MGCDKAGSFLPPTERRFAVLLGALLSSQTKDQVNN 190

[Close]

BLAST of Cmc07g0202381 vs. TAIR 10
Match: AT1G05900.1 (endonuclease III 2 )

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-24
Identity = 69/154 (44.81%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 47  SSVKSSNGVSEPETRVFVR-RRVKK-IAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTK 106
           S+ ++++G SE ETRV +R +R+K+   E        E K        P+IED  +K+T 
Sbjct: 47  SNSEAAHGASESETRVSLRKKRIKQDDLEPVKKCSARETKARKDMCGLPDIEDSPYKKTN 106

Query: 107 DSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDT 166
            +  SR  K   +  +   E S   +    AG   PPENWEKVL+GIR+M+ SEEAPV+ 
Sbjct: 107 GTASSRTRK--LNSYIKSTEASPSASSIKTAGLGIPPENWEKVLEGIRKMKPSEEAPVNA 166

Query: 167 MGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVT 199
           + C R GS LPPKERRF VL  +LLSSQTK+H+T
Sbjct: 167 VECDRTGSFLPPKERRFYVLIGTLLSSQTKEHIT 198

[Close]

BLAST of Cmc07g0202381 vs. TAIR 10
Match: AT1G05900.2 (endonuclease III 2 )

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-24
Identity = 69/154 (44.81%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 47  SSVKSSNGVSEPETRVFVR-RRVKK-IAESQDSGFEVEPKINTKRSFPPNIEDFAFKRTK 106
           S+ ++++G SE ETRV +R +R+K+   E        E K        P+IED  +K+T 
Sbjct: 47  SNSEAAHGASESETRVSLRKKRIKQDDLEPVKKCSARETKARKDMCGLPDIEDSPYKKTN 106

Query: 107 DSPGSRESKPPPDLLLNGIEGSTPTTHKGNAGRSKPPENWEKVLKGIREMRSSEEAPVDT 166
            +  SR  K   +  +   E S   +    AG   PPENWEKVL+GIR+M+ SEEAPV+ 
Sbjct: 107 GTASSRTRK--LNSYIKSTEASPSASSIKTAGLGIPPENWEKVLEGIRKMKPSEEAPVNA 166

Query: 167 MGCGRAGSTLPPKERRFAVLASSLLSSQTKDHVT 199
           + C R GS LPPKERRF VL  +LLSSQTK+H+T
Sbjct: 167 VECDRTGSFLPPKERRFYVLIGTLLSSQTKEHIT 198

[Close]

BLAST of Cmc07g0202381 vs. TAIR 10
Match: AT2G31450.1 (DNA glycosylase superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-24
Identity = 81/185 (43.78%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 16  FARRITCSAMSKGSSSSLPTSSNEVPPNPGISSVKSSNGVSEPETRVFVRRRVKKIAESQ 75
           F R  T S    G+ SS    S +       S+ + + G S  ETRV+ R++  K    +
Sbjct: 20  FYRIGTMSRQIHGAVSSSKHISLKTQHPLSDSNSELAYGASGSETRVYTRKKRLKQEPFE 79

Query: 76  DSGFEVEPKINT-KRSFPPNIEDFAFKRTKDSPGSRESKPPPDLLLNGIEGSTPTTHKGN 135
                    +NT K    P+IEDFA+K+T  SP S  S           E S   T    
Sbjct: 80  PLEKYSGKGVNTHKLCGLPDIEDFAYKKTIGSPSSSRS----------TETSITVTSVKT 139

Query: 136 AGRSKPPENWEKVLKGIREMRSSEEAPVDTMGCGRAGSTLPPKERRFAVLASSLLSSQTK 195
           AG   PPENW +VL+GIR+MRSSE+APVD+MGC +AGS LPP ERRFAVL  +LLSSQTK
Sbjct: 140 AG--YPPENWVEVLEGIRQMRSSEDAPVDSMGCDKAGSFLPPTERRFAVLLGALLSSQTK 192

Query: 196 DHVTH 200
           D V +
Sbjct: 200 DQVNN 192

The following BLAST results are available for this feature:

BLAST of Cmc07g0202381 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044590.1	1.7e-105	100.00	endonuclease III-like protein 1 [Cucumis melo var. makuwa]	[more]
XP_008453986.1	1.2e-103	97.54	PREDICTED: endonuclease III homolog 1, chloroplastic-like [Cucumis melo]	[more]
XP_004152104.1	1.7e-97	93.60	endonuclease III homolog 1, chloroplastic [Cucumis sativus] >KGN53081.2 hypothet...	[more]
TYK16994.1	6.0e-90	97.21	endonuclease III-like protein 1 [Cucumis melo var. makuwa]	[more]
XP_038878188.1	3.2e-83	83.25	endonuclease III homolog 2, chloroplastic-like isoform X3 [Benincasa hispida]	[more]

BLAST of Cmc07g0202381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9DFZ0	2.3e-23	44.81	Endonuclease III homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NTH...	[more]
Q9SIC4	8.6e-23	43.78	Endonuclease III homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NTH...	[more]
A7M7B9	3.2e-09	38.46	Endonuclease III-like protein 1 OS=Gallus gallus OX=9031 GN=NTHL1 PE=2 SV=1	[more]
P78549	2.1e-08	40.37	Endonuclease III-like protein 1 OS=Homo sapiens OX=9606 GN=NTHL1 PE=1 SV=2	[more]
O35980	2.7e-08	50.82	Endonuclease III-like protein 1 OS=Mus musculus OX=10090 GN=Nthl1 PE=2 SV=2	[more]

BLAST of Cmc07g0202381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TN21	8.4e-106	100.00	Endonuclease III homolog OS=Cucumis melo var. makuwa OX=1194695 GN=NTH1 PE=3 SV=...	[more]
A0A1S3BX24	6.0e-104	97.54	Endonuclease III homolog OS=Cucumis melo OX=3656 GN=LOC103494544 PE=3 SV=1	[more]
A0A0A0KU72	8.4e-98	93.60	ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015140 PE=3...	[more]
A0A5D3D186	2.9e-90	97.21	Endonuclease III homolog OS=Cucumis melo var. makuwa OX=1194695 GN=NTH1 PE=3 SV=...	[more]
A0A6J1CTU5	5.2e-71	73.76	Endonuclease III homolog OS=Momordica charantia OX=3673 GN=LOC111014717 PE=3 SV=...	[more]

BLAST of Cmc07g0202381 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31450.2	1.1e-25	47.74	DNA glycosylase superfamily protein	[more]
AT1G05900.1	1.6e-24	44.81	endonuclease III 2	[more]
AT1G05900.2	1.6e-24	44.81	endonuclease III 2	[more]
AT2G31450.1	6.1e-24	43.78	DNA glycosylase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..143
None	No IPR available	PANTHER	PTHR43286	ENDONUCLEASE III-LIKE PROTEIN 1	coord: 93..198
None	No IPR available	PANTHER	PTHR43286:SF3	ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC	coord: 93..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0202381.1	Cmc07g0202381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006285	base-excision repair, AP site formation
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0140078	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000703	oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity