Cmc07g0197831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0197831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Late embryogenesis abundant protein
Location	CMiso1.1chr07: 21127791 .. 21128889 (-)
RNA-Seq Expression	Cmc07g0197831
Synteny	Cmc07g0197831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATTCTCCCAAACCATCTCCAAGGAATGGGGGGCAGTATCAAGGAGTAAAAGGACAAAAGAATCCCATTCTTCAGAATCTTCATTGGGATGGATGAAATGGATAGCCTCTTTTTTCACCTATAAATAAAAATCAAGCAAATCCCATTGTTCAGCACAATCCACTTACCTTATTGGAAGAAGGTATGGCCACAGCATTTGTAAGAGGGGCTCACACAATGAACTCCATGTTCTTCAAGTAAGAGCCTTCTTCAACTCAGCCATCAACTAATTCTTTTCTTCCGTTTATGATTCTGTTTTTCAACAAGAAAGCAGTTTTTAAGAACATCAGAAAAGATTTATATTTACTTCTATTTCCAGCATTATCTTGTCATCGATCTATAATCAGAATGTTGCAAACCAAAACAAAGGACAGTATTGGAACCAAAGTCAATTAGGTTTCATTTGGAATAAGTTTGTTGGCTGGTACAATTAGTACATTGTTTAAATTTGTATTAACGTAAGATGTAAAACACGACACATGGAATAACGAGACAGAAACGTTACCCTTTTTTTTTTTCTGATTCTGATTCGGTTACATTCTTTGGCAGACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCCGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAATCAGAGCCATGTAGGGGGTGAAGCAACTCCTTGGGTGCTTGATGGGCGAACTGGAATTTATTACCCTAAAGGCCATGAGAAGGTCCTCGACGGCATTCCTGATGGCGGTGGAGCTACAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACATCTAAAAGGGTGTTTAACATTGGCCTGTTGCTCCATCCACATTACCTTATTGATTCTGAATTCACAAAAAGCAAACAGAGCAAGCGTTTTTATTGTTAAACCGATGATATCCGTTTAAAAAGCAATTGTATCAATTAAACTCAATAAGTACAATTTAGAGGTAAATACTAAGATTCAAATCAACAAGCACAAAAATATTCCGAAAAATTTGTGGTTGGGTTTATTATATAATTAACTAGAATCAACTATACTTACAAGCTT

mRNA sequence

TTCATTCTCCCAAACCATCTCCAAGGAATGGGGGGCAGTATCAAGGAGTAAAAGGACAAAAGAATCCCATTCTTCAGAATCTTCATTGGGATGGATGAAATGGATAGCCTCTTTTTTCACCTATAAATAAAAATCAAGCAAATCCCATTGTTCAGCACAATCCACTTACCTTATTGGAAGAAGGTATGGCCACAGCATTTGTAAGAGGGGCTCACACAATGAACTCCATGTTCTTCAAACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCCGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAATCAGAGCCATGTAGGGGGTGAAGCAACTCCTTGGGTGCTTGATGGGCGAACTGGAATTTATTACCCTAAAGGCCATGAGAAGGTCCTCGACGGCATTCCTGATGGCGGTGGAGCTACAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACATCTAAAAGGGTGTTTAACATTGGCCTGTTGCTCCATCCACATTACCTTATTGATTCTGAATTCACAAAAAGCAAACAGAGCAAGCGTTTTTATTGTTAAACCGATGATATCCGTTTAAAAAGCAATTGTATCAATTAAACTCAATAAGTACAATTTAGAGGTAAATACTAAGATTCAAATCAACAAGCACAAAAATATTCCGAAAAATTTGTGGTTGGGTTTATTATATAATTAACTAGAATCAACTATACTTACAAGCTT

Coding sequence (CDS)

ATGGCCACAGCATTTGTAAGAGGGGCTCACACAATGAACTCCATGTTCTTCAAACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCTCCCGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAATCAGAGCCATGTAGGGGGTGAAGCAACTCCTTGGGTGCTTGATGGGCGAACTGGAATTTATTACCCTAAAGGCCATGAGAAGGTCCTCGACGGCATTCCTGATGGCGGTGGAGCTACAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACATCTAA

Protein sequence

MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI

Homology

[Close]

BLAST of Cmc07g0197831 vs. NCBI nr
Match: XP_008451903.1 (PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60
           MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60

Query: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 102
           VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI
Sbjct: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 101

[Close]

BLAST of Cmc07g0197831 vs. NCBI nr
Match: XP_004148978.1 (uncharacterized protein LOC101205531 [Cucumis sativus] >KGN53454.1 hypothetical protein Csa_014649 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 2.5e-49
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60
           MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 102
           VLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI 101

[Close]

BLAST of Cmc07g0197831 vs. NCBI nr
Match: XP_038884831.1 (uncharacterized protein LOC120075477 [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 5.2e-47
Identity = 93/101 (92.08%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60
           MATAF RGA TMNSMFFKPIGRKGFHRKSSSPDM+RERVETESKE+KSN+SHVGGEATPW
Sbjct: 1   MATAFGRGAQTMNSMFFKPIGRKGFHRKSSSPDMIRERVETESKEMKSNKSHVGGEATPW 60

Query: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 102
           VLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Sbjct: 61  VLDGRTGIYYPKGHEKVLESIPDGGGAAVNTQVNWFNDENI 101

[Close]

BLAST of Cmc07g0197831 vs. NCBI nr
Match: XP_022931383.1 (uncharacterized protein LOC111437581 [Cucurbita moschata] >KAG7015118.1 hypothetical protein SDJN02_22751, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.1e-44
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60
           MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 60

Query: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDEN 101
           VLDGRTGIYYPKGHE VL+ IP+GGGA VNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 100

[Close]

BLAST of Cmc07g0197831 vs. NCBI nr
Match: XP_023552297.1 (uncharacterized protein LOC111810002 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187.2 bits (474), Expect = 7.0e-44
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60
           MATAF+RGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 34  MATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93

Query: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDEN 101
           VLDGRTGIYYPKGHE VL+ IP+GGGA VNTQVNWFNDEN
Sbjct: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 133

[Close]

BLAST of Cmc07g0197831 vs. ExPASy TrEMBL
Match: A0A1S3BTQ2 (uncharacterized protein LOC103493056 OS=Cucumis melo OX=3656 GN=LOC103493056 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.8e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60
           MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60

Query: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 102
           VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI
Sbjct: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 101

[Close]

BLAST of Cmc07g0197831 vs. ExPASy TrEMBL
Match: A0A0A0KX78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055970 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60
           MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 102
           VLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI 101

[Close]

BLAST of Cmc07g0197831 vs. ExPASy TrEMBL
Match: A0A6J1EYH0 (uncharacterized protein LOC111437581 OS=Cucurbita moschata OX=3662 GN=LOC111437581 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60
           MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 60

Query: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDEN 101
           VLDGRTGIYYPKGHE VL+ IP+GGGA VNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 100

[Close]

BLAST of Cmc07g0197831 vs. ExPASy TrEMBL
Match: A0A6J1J914 (uncharacterized protein LOC111482845 OS=Cucurbita maxima OX=3661 GN=LOC111482845 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.4e-44
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60
           MATAFVRGA +MNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 34  MATAFVRGAQSMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93

Query: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDEN 101
           VLDGRTGIYYPKGHE VL+ IP+GGGA VNTQVNWFNDEN
Sbjct: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 133

[Close]

BLAST of Cmc07g0197831 vs. ExPASy TrEMBL
Match: A0A5A7TP55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002880 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.4e-43
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 6   VRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGR 65
           V+  H +N  F++PIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGR
Sbjct: 38  VKWWHAING-FWRPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPWVLDGR 97

Query: 66  TGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 102
           TGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI
Sbjct: 98  TGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 132

[Close]

BLAST of Cmc07g0197831 vs. TAIR 10
Match: AT1G73120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, cultured cell; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 2.5e-15
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 7   RGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETE----SKELKSNQSHVG-GE----A 66
           RGA TMN+MF KP+ RK  H+KS+S D++R+ V+TE     +E+K+ +   G GE    A
Sbjct: 9   RGAQTMNTMFVKPMLRKSIHKKSASHDIVRDTVKTEGSSSGEEVKTMRGFYGAGETSSPA 68

Query: 67  TPWVLDGRTGIYYPKGHEKVLDGI-PDGGGATVNTQVNWFN 98
           + WV    TGIYYPKG EKV+  + P   G+  +  VNWF+
Sbjct: 69  SSWVPHEGTGIYYPKGQEKVMQDVPPPPAGSHADELVNWFS 109

The following BLAST results are available for this feature:

BLAST of Cmc07g0197831 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451903.1	1.2e-51	100.00	PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo]	[more]
XP_004148978.1	2.5e-49	96.04	uncharacterized protein LOC101205531 [Cucumis sativus] >KGN53454.1 hypothetical ...	[more]
XP_038884831.1	5.2e-47	92.08	uncharacterized protein LOC120075477 [Benincasa hispida]	[more]
XP_022931383.1	3.1e-44	90.00	uncharacterized protein LOC111437581 [Cucurbita moschata] >KAG7015118.1 hypothet...	[more]
XP_023552297.1	7.0e-44	89.00	uncharacterized protein LOC111810002 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc07g0197831 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc07g0197831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTQ2	5.8e-52	100.00	uncharacterized protein LOC103493056 OS=Cucumis melo OX=3656 GN=LOC103493056 PE=...	[more]
A0A0A0KX78	1.2e-49	96.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055970 PE=4 SV=1	[more]
A0A6J1EYH0	1.5e-44	90.00	uncharacterized protein LOC111437581 OS=Cucurbita moschata OX=3662 GN=LOC1114375...	[more]
A0A6J1J914	4.4e-44	89.00	uncharacterized protein LOC111482845 OS=Cucurbita maxima OX=3661 GN=LOC111482845...	[more]
A0A5A7TP55	8.4e-43	90.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc07g0197831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73120.1	2.5e-15	45.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PFAM	PF03242	LEA_3	coord: 15..79 e-value: 1.4E-4 score: 22.5
None	No IPR available	PANTHER	PTHR35109:SF2	BNAA02G16300D PROTEIN	coord: 2..99
None	No IPR available	PANTHER	PTHR35109	GLUTAMATE RACEMASE	coord: 2..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0197831.1	Cmc07g0197831.1	mRNA