Cmc07g0197001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0197001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II 10 kDa polypeptide, chloroplastic
Location	CMiso1.1chr07: 20227187 .. 20229323 (+)
RNA-Seq Expression	Cmc07g0197001
Synteny	Cmc07g0197001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACACTTCTCAGATTATCAAGCTCTGAGTTCCGTTTTGCGCCATTGCAAATTTTCGAGCTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATCGATCGGAAATGGCGGCCTCAATGATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGTGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGCCTCCTTCAAGGTCGTCGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGTAAAATTAGCTACCCATTGATGCGATATTTGGCTTTTTGGAAACTGTTAGGGGATTGATTTTAGGTTTATTTACGATTCTGACTCGTATAGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGCCCAAGGTTAGAATTCCCATCGGCGATTCTGCCGTTTTGGTAATCTTGTTAGCTACTCTGTAGTCTGTAATTCATTCTGTTTTGGAATTTGATTGATTTAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGAGCCAATGTCGATGGTTACAGGTGAAACATCTGGCTCTGATTTTGTTCTTAGTTTTCTGAATTTGAAAATCAACCTGAATTCAAAGCGTTATTGTTCATGTTTAATTTGAAAATCTTTCATTATCATGTATCAACAAATTAAACCTTACGTGTATTGTATTCTCCACTTTTGCAGTCCCATCTACGATACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTGGTAAGTTCTTCCTCCACTTTTGAATTTGCAACCCTATTTTTTTTGCATCTTTCATGCATATGATATATATATATATATATATATATATACACACATACAGAATACAGAAATTTGAATTTTATACATTAGTTATTTGAATTGAATGTGGCTGGTGAATGAATTTACAATTGATTATTTATTTTGTGAATTACATAGGCAAAGGGATTGTAAAGAGCCGAAATCATGAATTAATGGTATTGGAAAGAGGGTTTTCAAGTGCTACGGTTTTCTCAGTCAGAATGATTGATTTTCATTTTTTAATCATGAATTTCTAATATTATTGACTCCGGATGGAGTTCATCTATTTTCTTCCCTTAGAATTTATCTTTTATTTTATTTGATTTGTTGTTGCCATAACAAATACAATTTTTAAATATATATCGTTTTTTACGTAAAAAATTCAAAGTCAAATAACTTTGCCCATTTTAATATTTTATGCATAAAAACTGACTTGATTTGAGCATTCTATACCTGTCTAACAAATTTCAACCCTTGGTAATTCATTTTGTGGGGACAAATTTAGGAACGCTTGATCACAATAAATAGGGGGAGTACATGACAATTAAAGTTATAGATTACAATAGGTCATTCATTTTATATATTCTTAACCCTCTCTTTTGTATAAACTCAAAGTTTTAAAAAATAAAGTATTGTTTTTTTATAAGATAAAAAATAAAGTATTGTTATAAATTAAAATAGTTTACAATGTTTCCATTAGAATTCAGCCATTCTTACTTTAGAAGCAACTAGCATGTTAAGTTACTTTTTGATCCAACGATGTGCATTTGCCTTTTACTTTATAGATAGTTCTAATGTAAATATCCATGCAGAAAACTTACATAAAAATTATGTTAACAAACAGAAGTTAGTATCAATACCTTGTGTGAAAAACGGATACTAATGAAATATGGAATTGCATTGTGATTGAACATGAACATATTTGTTGATATATTGTGGACAACATTGAATTTCAGGTACTACTGGGTTAGCCATTTGGGCAGTGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAAGGTGGAGGGAAAGTTAAAAGTCTTGTTTTTTCTTCACATTAGTTTTTGTAGCATGTTATTATTATGAACATACATTATTATTAAGAAATTCTGTGTGTAATTATCTGGATAATTGCTTCATAAATGCTTGGTAAGATAATTCTTCTCGTTCCCATCTTTTATCTTCTTGTTTTTTTCCTTTACTTTGTATATTAGGGTTGGCACCGAGTTTGAAATCACCTTTTGGATATAGTACTATTTTAAGTCTAAAAATTCTT

mRNA sequence

TCACACTTCTCAGATTATCAAGCTCTGAGTTCCGTTTTGCGCCATTGCAAATTTTCGAGCTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATCGATCGGAAATGGCGGCCTCAATGATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGTGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGCCTCCTTCAAGGTCGTCGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGCCCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGAGCCAATGTCGATGGTTACAGTCCCATCTACGATACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTGGTACTACTGGGTTAGCCATTTGGGCAGTGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAAGGTGGAGGGAAAGTTAAAAGTCTTGTTTTTTCTTCACATTAGTTTTTGTAGCATGTTATTATTATGAACATACATTATTATTAAGAAATTCTGTGTGTAATTATCTGGATAATTGCTTCATAAATGCTTGGTAAGATAATTCTTCTCGTTCCCATCTTTTATCTTCTTGTTTTTTTCCTTTACTTTGTATATTAGGGTTGGCACCGAGTTTGAAATCACCTTTTGGATATAGTACTATTTTAAGTCTAAAAATTCTT

Coding sequence (CDS)

ATGGCGGCCTCAATGATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGTGAGAGGTCTTCCATCTCTGGCGAGAAACTCCGCCTCCTTCAAGGTCGTCGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAATCAATGGTTCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGCCCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGAGCCAATGTCGATGGTTACAGTCCCATCTACGATACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTGGTACTACTGGGTTAGCCATTTGGGCAGTGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAA

Protein sequence

MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Homology

[Close]

BLAST of Cmc07g0197001 vs. NCBI nr
Match: KAA0062951.1 (photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa])

HSP 1 Score: 268.1 bits (684), Expect = 4.3e-68
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAASMMTSVSLKPAPFTVEKS RGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASMMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Cmc07g0197001 vs. NCBI nr
Match: XP_008451826.1 (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK16392.1 photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-67
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKS RGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Cmc07g0197001 vs. NCBI nr
Match: XP_022136536.1 (photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia])

HSP 1 Score: 254.6 bits (649), Expect = 4.9e-64
Identity = 130/138 (94.20%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKS +GLPSLAR SASFKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Cmc07g0197001 vs. NCBI nr
Match: XP_038876356.1 (photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 129/138 (93.48%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKS +GLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSVPFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Cmc07g0197001 vs. NCBI nr
Match: XP_004147752.1 (photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus] >KGN53519.1 hypothetical protein Csa_014915 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 130/138 (94.20%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKS  GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWA TLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Cmc07g0197001 vs. ExPASy Swiss-Prot
Match: P06183 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN=PSBR PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.1e-58
Identity = 116/139 (83.45%), Postives = 131/139 (94.24%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEK-SVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNL 60
           MA+++M+S+SLKP  FT+EK SV+GLPSLAR+S+SFKVVASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRKPKGKGVYQ+VDKYGANVDGYSPIY+T +WSP+GDVYVGGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            G+LAGGALLVYNTSAL Q
Sbjct: 121 VGILAGGALLVYNTSALAQ 138

[Close]

BLAST of Cmc07g0197001 vs. ExPASy Swiss-Prot
Match: Q40163 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBR PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-57
Identity = 115/139 (82.73%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEK-SVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNL 60
           MA+++M+S+SLKP  FT+EK SV+GLPSL R+S+SFKVVASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRKPKGKGVYQ+VDKYGANVDGYSPIY+T +WSP+GDVYVGGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            G+LAGGALLVYNTSAL Q
Sbjct: 121 LGILAGGALLVYNTSALAQ 138

[Close]

BLAST of Cmc07g0197001 vs. ExPASy Swiss-Prot
Match: Q40519 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBR PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.0e-57
Identity = 112/133 (84.21%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 7   TSVSLKPAPFTVEK-SVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLRDGVDA 66
           T +SLKPAPF+VEK +V+GLPSLAR+S+SF+V ASG KK+KTDKPYGINGSM+LRDGVDA
Sbjct: 4   TVMSLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDA 63

Query: 67  SGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLAGLLAG 126
           SGRK KGKGVYQFVDKYGANVDGYSPIY+T DWSP+GDVYVGGTTGLAIWAVTL G+LAG
Sbjct: 64  SGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAG 123

Query: 127 GALLVYNTSALVQ 139
           GALLV+NTSAL Q
Sbjct: 124 GALLVFNTSALAQ 136

[Close]

BLAST of Cmc07g0197001 vs. ExPASy Swiss-Prot
Match: P27202 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBR PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-52
Identity = 110/140 (78.57%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MAAS-MMTSVSLKPAPFTVEK-SVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMN 60
           MAAS M++SV+LKPA FTVEK + RGLPSL R   SFK+VASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVT 120
           LRDGVDASGRK KG GVY++VDKYGANVDGYSPIY+  +WS +GDVY GG TGLAIWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALVQ 139
           LAG+LAGGALLVYNTSAL Q
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

[Close]

BLAST of Cmc07g0197001 vs. ExPASy Swiss-Prot
Match: P10690 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBR PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-52
Identity = 107/140 (76.43%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVE--KSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMN 60
           MA S+M+S+SLKP+ F V+   +V+GLPSL+R+SASF V ASG KKIK DKP GI G M 
Sbjct: 1   MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60

Query: 61  LRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVT 120
           LRDGVD+SGRKP GKGVYQFVDKYGANVDGYSPIY+ ++W+PTGDVY GGTTGL IWAVT
Sbjct: 61  LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALVQ 139
           LAGLLAGGALLVYNTSAL Q
Sbjct: 121 LAGLLAGGALLVYNTSALAQ 140

[Close]

BLAST of Cmc07g0197001 vs. ExPASy TrEMBL
Match: A0A5A7VB86 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00450 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAASMMTSVSLKPAPFTVEKS RGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASMMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Cmc07g0197001 vs. ExPASy TrEMBL
Match: A0A5D3CXX1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001860 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.0e-68
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKS RGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Cmc07g0197001 vs. ExPASy TrEMBL
Match: A0A1S3BSD1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492995 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.0e-68
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKS RGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Cmc07g0197001 vs. ExPASy TrEMBL
Match: A0A6J1C3S3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008214 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64
Identity = 130/138 (94.20%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKS +GLPSLAR SASFKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of Cmc07g0197001 vs. ExPASy TrEMBL
Match: A0A0A0KXH3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G064020 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.3e-64
Identity = 130/138 (94.20%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAASMMTSVSLKPAPFTVEKSVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAAS+MTSVSLKPAPFTVEKS  GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWA TLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

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BLAST of Cmc07g0197001 vs. TAIR 10
Match: AT1G79040.1 (photosystem II subunit R )

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-53
Identity = 110/140 (78.57%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MAAS-MMTSVSLKPAPFTVEK-SVRGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMN 60
           MAAS M++SV+LKPA FTVEK + RGLPSL R   SFK+VASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVT 120
           LRDGVDASGRK KG GVY++VDKYGANVDGYSPIY+  +WS +GDVY GG TGLAIWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALVQ 139
           LAG+LAGGALLVYNTSAL Q
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

The following BLAST results are available for this feature:

BLAST of Cmc07g0197001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062951.1	4.3e-68	99.28	photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa]	[more]
XP_008451826.1	1.2e-67	98.55	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK1...	[more]
XP_022136536.1	4.9e-64	94.20	photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]	[more]
XP_038876356.1	1.1e-63	93.48	photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]	[more]
XP_004147752.1	1.1e-63	94.20	photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus] >KGN53519.1 h...	[more]

BLAST of Cmc07g0197001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P06183	7.1e-58	83.45	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN...	[more]
Q40163	2.7e-57	82.73	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q40519	6.0e-57	84.21	Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN...	[more]
P27202	1.5e-52	78.57	Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P10690	1.5e-52	76.43	Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea OX=3562 GN...	[more]

BLAST of Cmc07g0197001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VB86	2.1e-68	99.28	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CXX1	6.0e-68	98.55	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BSD1	6.0e-68	98.55	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1C3S3	2.4e-64	94.20	Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 ...	[more]
A0A0A0KXH3	5.3e-64	94.20	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis sativus OX=3659 GN=C...	[more]

BLAST of Cmc07g0197001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79040.1	1.1e-53	78.57	photosystem II subunit R	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006814	Photosystem II PsbR	PFAM	PF04725	PsbR	coord: 40..136 e-value: 1.2E-50 score: 169.9
IPR006814	Photosystem II PsbR	PANTHER	PTHR34369	PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC	coord: 1..138
None	No IPR available	PANTHER	PTHR34369:SF8	BNAANNG27100D PROTEIN	coord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0197001.1	Cmc07g0197001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0042651	thylakoid membrane