Cmc07g0196791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0196791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr07: 20077418 .. 20078334 (+)
RNA-Seq Expression	Cmc07g0196791
Synteny	Cmc07g0196791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAAATGAAATTCAAATATTCTCTGTTTTTATGTGTCCTATTTTTGTTTGTTTTAGTCATCTCATGGGCTAAACAAATCCACGCAACTCAAGATGAGAAACAAGGTATTCAATTTAACACACGCGTATTTCCTTTCATTTTTTAGTGTTGACACTTTTTTTAACATAACTTACAAAATTTTCATGCATGTTTTGCATGAAAGCCAAGTAAAATTAAGATTATAATAATTTATTAGAACAAGACTTGTTCCTACTTGTGTTAAATCTTTTGAATACATCAAGCTTTACCAAAGTTTTCGAGGCGTTTTGGGATAATTAATTGATCAACAACCAATAAAAAAGAATTTTTCTTTCATCATTTTCAAAGTATCTTTTAGATTTTGTTATGTGTGATTATAATTAAAAGAAAACTATTGGGTGTTTGCACCTACTTTTAATTACAACAGTGGGAGCTATCCAACTGAAAAACGTATCATACCAAAGGGAGAGTAAAAAATCTATAACATGGCAGTTTTTATTCTTTTCAAAAAATGATGTTTTGTTTAAAAAAAAGGTGATCCGACGGGTGCATCTACCTAATCATTGCTCTTATTAAAATTAGATGGAAAATATGTAAATAAAAAAAAAAAAAGATGGAGCCAAATATTGCACTTACTTAACAAATATATGATTGAGAAAGGTTCTGTAAATTCTGATGTATACAGGGGTGAGAGTAAGTGGTGTAAATGAAATCTTTGTGTATTTAGTTCCAGCAGAGGATGTAGCACATGTGGATAACGATGGCACTTCTGAAGATCAGAAGTATGCTACAGGACCACCTCCTGGTTGGGGAGGCTACGGTGGAGGCGATGGCGGCGGTGTATGGAAAGGAGGCAGCGGGAAGGGTGGAGGTAGAAAAGGAGGAGGCAGAAACTGA

mRNA sequence

GTGAAAATGAAATTCAAATATTCTCTGTTTTTATGTGTCCTATTTTTGTTTGTTTTAGTCATCTCATGGGCTAAACAAATCCACGCAACTCAAGATGAGAAACAAGTTCCAGCAGAGGATGTAGCACATGTGGATAACGATGGCACTTCTGAAGATCAGAAGTATGCTACAGGACCACCTCCTGGTTGGGGAGGCTACGGTGGAGGCGATGGCGGCGGTGTATGGAAAGGAGGCAGCGGGAAGGGTGGAGGTAGAAAAGGAGGAGGCAGAAACTGA

Coding sequence (CDS)

ATGAAATTCAAATATTCTCTGTTTTTATGTGTCCTATTTTTGTTTGTTTTAGTCATCTCATGGGCTAAACAAATCCACGCAACTCAAGATGAGAAACAAGTTCCAGCAGAGGATGTAGCACATGTGGATAACGATGGCACTTCTGAAGATCAGAAGTATGCTACAGGACCACCTCCTGGTTGGGGAGGCTACGGTGGAGGCGATGGCGGCGGTGTATGGAAAGGAGGCAGCGGGAAGGGTGGAGGTAGAAAAGGAGGAGGCAGAAACTGA

Protein sequence

MKFKYSLFLCVLFLFVLVISWAKQIHATQDEKQVPAEDVAHVDNDGTSEDQKYATGPPPGWGGYGGGDGGGVWKGGSGKGGGRKGGGRN

Homology

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BLAST of Cmc07g0196791 vs. NCBI nr
Match: XP_031740553.1 (acanthoscurrin-1-like [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 6.9e-27
Identity = 72/89 (80.90%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MKFKYSLFLCVLFLFVLVISWAKQIHATQDEKQVPAEDVAHVDNDGTSEDQKYATGPPPG 60
          MK KYSLF C+L L VLVISWA QIH TQDEKQV A+DVAHVDNDG+ ED KYATGPPPG
Sbjct: 1  MKSKYSLFFCLLLLSVLVISWATQIHTTQDEKQVSAKDVAHVDNDGSYEDGKYATGPPPG 60

Query: 61 WGGYGGGDGGGVWKGGSGKGGGRKGGGRN 90
          WGG+GGG GGGVW+GG GKGGG KGGGRN
Sbjct: 61 WGGFGGGGGGGVWRGGGGKGGGGKGGGRN 89

The following BLAST results are available for this feature:

BLAST of Cmc07g0196791 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740553.1	6.9e-27	80.90	acanthoscurrin-1-like [Cucumis sativus]	[more]

BLAST of Cmc07g0196791 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc07g0196791 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc07g0196791 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..87 e-value: 6.0E-9 score: 36.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0196791.1	Cmc07g0196791.1	mRNA