Cmc07g0196571 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0196571
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr07: 19721280 .. 19721855 (-)
RNA-Seq Expression	Cmc07g0196571
Synteny	Cmc07g0196571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCGAATGTGTGCTTCACCTCTCAAATTGAGCTGAGTGTGGAAGAAGCATTAACTGATGAGAAGTGGATCCTAGCTATACAAGAGGAATTGTTACAGTTTGAAAGAAATGTTTTCTGGGAACTGGTTCCTCGACCTACAAATGCTAACATTATTGGGACAAAATGGATTTTTAAGAACAAGATCGATGAACAAGGAGTCATAACTCGAAACAAGGCTCGCTTAGTGGCACAAGGGTACACACAGATCGAAGGAATCGATTTTGGTGAGACGTTTGCTCCCATAGCCAGATTTGAAACCATTCGTCTACTTCTTAACTTTTCCTATCTCCGTCACATCAAGCTCTTTCAAATGGATGTCAAAAGCGCATTTCTAAATGGTTTTCTCTCTGAAGAAGTGTATGTGGCCCAACCAAAAGGGTTCATTGATCCTGCACATCTTGATCACGTTTCAATCTTCGAAAGGCATTATATGGTCTTAAGCAGGCACCTCGGGCTTGGTATGAACAACTTACTATGTTTCTGGTGCAACAAGGATACAATAGAGGGGAAGCTAACTAGAAAATGTTCATAA

mRNA sequence

ATGATTGCGAATGTGTGCTTCACCTCTCAAATTGAGCTGAGTGTGGAAGAAGCATTAACTGATGAGAAGTGGATCCTAGCTATACAAGAGGAATTGTTACAGTTTGAAAGAAATGTTTTCTGGGAACTGGTTCCTCGACCTACAAATGCTAACATTATTGGGACAAAATGGATTTTTAAGAACAAGATCGATGAACAAGGAGTCATAACTCGAAACAAGGCTCGCTTAGTGGCACAAGGGTACACACAGATCGAAGGAATCGATTTTGGTGAGACGTTTGCTCCCATAGCCAGATTTGAAACCATTCGTCTACTTCTTAACTTTTCCTATCTCCGTCACATCAAGCTCTTTCAAATGGATGTCAAAAGCGCATTTCTAAATGGTTTTCTCTCTGAAGAAGTGTATGTGGCCCAACCAAAAGGGTTCATTGATCCTGCACATCTTGATCACGTTTCAATCTTCGAAAGGCATTATATGGTCTTAAGCAGGCACCTCGGGCTTGGTATGAACAACTTACTATGTTTCTGGTGCAACAAGGATACAATAGAGGGGAAGCTAACTAGAAAATGTTCATAA

Coding sequence (CDS)

ATGATTGCGAATGTGTGCTTCACCTCTCAAATTGAGCTGAGTGTGGAAGAAGCATTAACTGATGAGAAGTGGATCCTAGCTATACAAGAGGAATTGTTACAGTTTGAAAGAAATGTTTTCTGGGAACTGGTTCCTCGACCTACAAATGCTAACATTATTGGGACAAAATGGATTTTTAAGAACAAGATCGATGAACAAGGAGTCATAACTCGAAACAAGGCTCGCTTAGTGGCACAAGGGTACACACAGATCGAAGGAATCGATTTTGGTGAGACGTTTGCTCCCATAGCCAGATTTGAAACCATTCGTCTACTTCTTAACTTTTCCTATCTCCGTCACATCAAGCTCTTTCAAATGGATGTCAAAAGCGCATTTCTAAATGGTTTTCTCTCTGAAGAAGTGTATGTGGCCCAACCAAAAGGGTTCATTGATCCTGCACATCTTGATCACGTTTCAATCTTCGAAAGGCATTATATGGTCTTAAGCAGGCACCTCGGGCTTGGTATGAACAACTTACTATGTTTCTGGTGCAACAAGGATACAATAGAGGGGAAGCTAACTAGAAAATGTTCATAA

Protein sequence

MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFKNKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMDVKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGLGMNNLLCFWCNKDTIEGKLTRKCS

Homology

[Close]

BLAST of Cmc07g0196571 vs. NCBI nr
Match: KAA0063011.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 337.8 bits (865), Expect = 6.1e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 60
           MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK
Sbjct: 320 MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 379

Query: 61  NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD 120
           NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD
Sbjct: 380 NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD 439

Query: 121 VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL 168
           VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL
Sbjct: 440 VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL 486

[Close]

BLAST of Cmc07g0196571 vs. NCBI nr
Match: TYK16336.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 4.8e-86
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 60
           MIANVCFTSQIE SVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK
Sbjct: 315 MIANVCFTSQIEPSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 374

Query: 61  NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD 120
           NKIDEQGVITRNKARLVAQGYTQI+GIDFGETFAPIAR ETIRLLLNFSYLRHIKLFQMD
Sbjct: 375 NKIDEQGVITRNKARLVAQGYTQIKGIDFGETFAPIARLETIRLLLNFSYLRHIKLFQMD 434

Query: 121 VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL 168
           VKSAFLNGFLSEEVYVAQ KGFIDPAHLDHVSIFERHYMVLSRHLGL
Sbjct: 435 VKSAFLNGFLSEEVYVAQQKGFIDPAHLDHVSIFERHYMVLSRHLGL 481

[Close]

BLAST of Cmc07g0196571 vs. NCBI nr
Match: XP_016901150.1 (PREDICTED: uncharacterized protein LOC107991184 [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 4.8e-86
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 60
           MIANVCFTSQIE SVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK
Sbjct: 250 MIANVCFTSQIEPSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 309

Query: 61  NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD 120
           NKIDEQGVITRNKARLVAQGYTQI+GIDFGETFAPIAR ETIRLLLNFSYLRHIKLFQMD
Sbjct: 310 NKIDEQGVITRNKARLVAQGYTQIKGIDFGETFAPIARLETIRLLLNFSYLRHIKLFQMD 369

Query: 121 VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL 168
           VKSAFLNGFLSEEVYVAQ KGFIDPAHLDHVSIFERHYMVLSRHLGL
Sbjct: 370 VKSAFLNGFLSEEVYVAQQKGFIDPAHLDHVSIFERHYMVLSRHLGL 416

[Close]

BLAST of Cmc07g0196571 vs. NCBI nr
Match: KAA0059939.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24885.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 8.0e-57
Identity = 111/152 (73.03%), Postives = 126/152 (82.89%), Query Frame = 0


Query: 1   MIANVCFTSQIE-LSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIF 60
           M+ANVC+TS +E   V   L+DE WIL +QEELLQFERN  WELVP+P  ANIIGTKWIF
Sbjct: 114 MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 173

Query: 61  KNKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQM 120
           KNK DE+G + RNKARLVAQ Y QIEG+DFGETF P+AR E IRLLL+++Y R  KLFQM
Sbjct: 174 KNKTDEEGRVIRNKARLVAQRYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 233

Query: 121 DVKSAFLNGFLSEEVYVAQPKGFIDPAHLDHV 152
           DVKSAFLNG+LSEEVYVAQPKGF+DP H DHV
Sbjct: 234 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHV 265

[Close]

BLAST of Cmc07g0196571 vs. NCBI nr
Match: KAA0059225.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 8.0e-57
Identity = 112/152 (73.68%), Postives = 128/152 (84.21%), Query Frame = 0


Query: 1    MIANVCFTSQIE-LSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIF 60
            M+ANVC+TS +E  +V  AL+DE WIL IQEELLQFERN  WELVP+P  ANIIGTKWIF
Sbjct: 977  MVANVCYTSLLEPTTVSAALSDEHWILTIQEELLQFERNQVWELVPKPPYANIIGTKWIF 1036

Query: 61   KNKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQM 120
            KNK DE+G + RNKARLVAQGY+QIEG+DFGETFAP+AR E IRLLL+++     KLFQM
Sbjct: 1037 KNKTDEEGRVIRNKARLVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQM 1096

Query: 121  DVKSAFLNGFLSEEVYVAQPKGFIDPAHLDHV 152
            DVKSAFLNG+L EEVYVAQPKGF+DP H DHV
Sbjct: 1097 DVKSAFLNGYLCEEVYVAQPKGFVDPVHEDHV 1128

[Close]

BLAST of Cmc07g0196571 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.4e-25
Identity = 56/136 (41.18%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 17   EALTDEKWILAIQEELLQFERNVFWELV-PRPTNANIIGTKWIFKNKIDEQGVITRNKAR 76
            +A+ D++W  A+  E+     N  W+LV P P +  I+G +WIF  K +  G + R KAR
Sbjct: 944  QAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKAR 1003

Query: 77   LVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMDVKSAFLNGFLSEEVY 136
            LVA+GY Q  G+D+ ETF+P+ +  +IR++L  +  R   + Q+DV +AFL G L++EVY
Sbjct: 1004 LVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVY 1063

Query: 137  VAQPKGFIDPAHLDHV 152
            ++QP GF+D    D+V
Sbjct: 1064 MSQPPGFVDKDRPDYV 1079

[Close]

BLAST of Cmc07g0196571 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-24
Identity = 57/136 (41.91%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 17   EALTDEKWILAIQEELLQFERNVFWELV-PRPTNANIIGTKWIFKNKIDEQGVITRNKAR 76
            +AL DE+W  A+  E+     N  W+LV P P++  I+G +WIF  K +  G + R KAR
Sbjct: 961  QALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKAR 1020

Query: 77   LVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMDVKSAFLNGFLSEEVY 136
            LVA+GY Q  G+D+ ETF+P+ +  +IR++L  +  R   + Q+DV +AFL G L+++VY
Sbjct: 1021 LVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVY 1080

Query: 137  VAQPKGFIDPAHLDHV 152
            ++QP GFID    ++V
Sbjct: 1081 MSQPPGFIDKDRPNYV 1096

[Close]

BLAST of Cmc07g0196571 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 24   WILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFKNKIDEQGVITRNKARLVAQGYTQ 83
            W  AI  EL   + N  W +  RP N NI+ ++W+F  K +E G   R KARLVA+G+TQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 84   IEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMDVKSAFLNGFLSEEVYVAQPKG 142
               ID+ ETFAP+AR  + R +L+     ++K+ QMDVK+AFLNG L EE+Y+  P+G
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG 1023

[Close]

BLAST of Cmc07g0196571 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-20
Identity = 48/116 (41.38%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 27  AIQEELLQFERNVFWELVPRPTNANIIGTKWIFKNKIDEQGVITRNKARLVAQGYTQIEG 86
           A+QEE+   ++N  ++LV  P     +  KW+FK K D    + R KARLV +G+ Q +G
Sbjct: 829 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 888

Query: 87  IDFGETFAPIARFETIRLLLNFSYLRHIKLFQMDVKSAFLNGFLSEEVYVAQPKGF 143
           IDF E F+P+ +  +IR +L+ +    +++ Q+DVK+AFL+G L EE+Y+ QP+GF
Sbjct: 889 IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGF 944

[Close]

BLAST of Cmc07g0196571 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.2e-20
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 14  SVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFKNKIDEQGVITRNK 73
           SV  AL D  W  A+QEEL    RN  W LVP P N NI+G KW+FK K+   G + R K
Sbjct: 30  SVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLK 89

Query: 74  ARLVAQGYTQIEGIDFGETFAPIARFETIRLLLN 108
           ARLVA+G+ Q EGI F ET++P+ R  TIR +LN
Sbjct: 90  ARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

[Close]

BLAST of Cmc07g0196571 vs. ExPASy TrEMBL
Match: A0A5A7VBE1 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001130 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.9e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 60
           MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK
Sbjct: 320 MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 379

Query: 61  NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD 120
           NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD
Sbjct: 380 NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD 439

Query: 121 VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL 168
           VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL
Sbjct: 440 VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL 486

[Close]

BLAST of Cmc07g0196571 vs. ExPASy TrEMBL
Match: A0A5D3D0Z2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001180 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.3e-86
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 60
           MIANVCFTSQIE SVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK
Sbjct: 315 MIANVCFTSQIEPSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 374

Query: 61  NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD 120
           NKIDEQGVITRNKARLVAQGYTQI+GIDFGETFAPIAR ETIRLLLNFSYLRHIKLFQMD
Sbjct: 375 NKIDEQGVITRNKARLVAQGYTQIKGIDFGETFAPIARLETIRLLLNFSYLRHIKLFQMD 434

Query: 121 VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL 168
           VKSAFLNGFLSEEVYVAQ KGFIDPAHLDHVSIFERHYMVLSRHLGL
Sbjct: 435 VKSAFLNGFLSEEVYVAQQKGFIDPAHLDHVSIFERHYMVLSRHLGL 481

[Close]

BLAST of Cmc07g0196571 vs. ExPASy TrEMBL
Match: A0A1S4DZJ2 (uncharacterized protein LOC107991184 OS=Cucumis melo OX=3656 GN=LOC107991184 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.3e-86
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MIANVCFTSQIELSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 60
           MIANVCFTSQIE SVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK
Sbjct: 250 MIANVCFTSQIEPSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFK 309

Query: 61  NKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMD 120
           NKIDEQGVITRNKARLVAQGYTQI+GIDFGETFAPIAR ETIRLLLNFSYLRHIKLFQMD
Sbjct: 310 NKIDEQGVITRNKARLVAQGYTQIKGIDFGETFAPIARLETIRLLLNFSYLRHIKLFQMD 369

Query: 121 VKSAFLNGFLSEEVYVAQPKGFIDPAHLDHVSIFERHYMVLSRHLGL 168
           VKSAFLNGFLSEEVYVAQ KGFIDPAHLDHVSIFERHYMVLSRHLGL
Sbjct: 370 VKSAFLNGFLSEEVYVAQQKGFIDPAHLDHVSIFERHYMVLSRHLGL 416

[Close]

BLAST of Cmc07g0196571 vs. ExPASy TrEMBL
Match: A0A5A7V293 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001570 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.9e-57
Identity = 111/152 (73.03%), Postives = 126/152 (82.89%), Query Frame = 0


Query: 1   MIANVCFTSQIE-LSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIF 60
           M+ANVC+TS +E   V   L+DE WIL +QEELLQFERN  WELVP+P  ANIIGTKWIF
Sbjct: 114 MVANVCYTSSLEPTMVSAVLSDEHWILTMQEELLQFERNQIWELVPKPPYANIIGTKWIF 173

Query: 61  KNKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQM 120
           KNK DE+G + RNKARLVAQ Y QIEG+DFGETF P+AR E IRLLL+++Y R  KLFQM
Sbjct: 174 KNKTDEEGRVIRNKARLVAQRYFQIEGLDFGETFFPVARLEVIRLLLSYAYFRRFKLFQM 233

Query: 121 DVKSAFLNGFLSEEVYVAQPKGFIDPAHLDHV 152
           DVKSAFLNG+LSEEVYVAQPKGF+DP H DHV
Sbjct: 234 DVKSAFLNGYLSEEVYVAQPKGFVDPVHQDHV 265

[Close]

BLAST of Cmc07g0196571 vs. ExPASy TrEMBL
Match: A0A5A7V046 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001550 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.9e-57
Identity = 112/152 (73.68%), Postives = 128/152 (84.21%), Query Frame = 0


Query: 1    MIANVCFTSQIE-LSVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIF 60
            M+ANVC+TS +E  +V  AL+DE WIL IQEELLQFERN  WELVP+P  ANIIGTKWIF
Sbjct: 977  MVANVCYTSLLEPTTVSAALSDEHWILTIQEELLQFERNQVWELVPKPPYANIIGTKWIF 1036

Query: 61   KNKIDEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQM 120
            KNK DE+G + RNKARLVAQGY+QIEG+DFGETFAP+AR E IRLLL+++     KLFQM
Sbjct: 1037 KNKTDEEGRVIRNKARLVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQM 1096

Query: 121  DVKSAFLNGFLSEEVYVAQPKGFIDPAHLDHV 152
            DVKSAFLNG+L EEVYVAQPKGF+DP H DHV
Sbjct: 1097 DVKSAFLNGYLCEEVYVAQPKGFVDPVHEDHV 1128

[Close]

BLAST of Cmc07g0196571 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-25
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 0


Query: 5   VCFTSQIELSV-EEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFKNKI 64
           VC     E S   EA     W  A+ +E+   E    WE+   P N   IG KW++K K 
Sbjct: 78  VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137

Query: 65  DEQGVITRNKARLVAQGYTQIEGIDFGETFAPIARFETIRLLLNFSYLRHIKLFQMDVKS 124
           +  G I R KARLVA+GYTQ EGIDF ETF+P+ +  +++L+L  S + +  L Q+D+ +
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197

Query: 125 AFLNGFLSEEVYVAQPKGF 143
           AFLNG L EE+Y+  P G+
Sbjct: 198 AFLNGDLDEEIYMKLPPGY 216

[Close]

BLAST of Cmc07g0196571 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 99.0 bits (245), Expect = 4.4e-21
Identity = 50/94 (53.19%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 14  SVEEALTDEKWILAIQEELLQFERNVFWELVPRPTNANIIGTKWIFKNKIDEQGVITRNK 73
           SV  AL D  W  A+QEEL    RN  W LVP P N NI+G KW+FK K+   G + R K
Sbjct: 30  SVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLK 89

Query: 74  ARLVAQGYTQIEGIDFGETFAPIARFETIRLLLN 108
           ARLVA+G+ Q EGI F ET++P+ R  TIR +LN
Sbjct: 90  ARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123

The following BLAST results are available for this feature:

BLAST of Cmc07g0196571 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063011.1	6.1e-89	100.00	F5J5.1 [Cucumis melo var. makuwa]	[more]
TYK16336.1	4.8e-86	97.60	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
XP_016901150.1	4.8e-86	97.60	PREDICTED: uncharacterized protein LOC107991184 [Cucumis melo]	[more]
KAA0059939.1	8.0e-57	73.03	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24885.1 gag-pol polyprotein [...	[more]
KAA0059225.1	8.0e-57	73.68	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0196571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	6.4e-25	41.18	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.1e-24	41.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.6e-23	46.61	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	2.8e-20	41.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92520	6.2e-20	53.19	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc07g0196571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBE1	2.9e-89	100.00	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001130 PE=4 S...	[more]
A0A5D3D0Z2	2.3e-86	97.60	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A1S4DZJ2	2.3e-86	97.60	uncharacterized protein LOC107991184 OS=Cucumis melo OX=3656 GN=LOC107991184 PE=...	[more]
A0A5A7V293	3.9e-57	73.03	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G...	[more]
A0A5A7V046	3.9e-57	73.68	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G...	[more]

BLAST of Cmc07g0196571 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.3e-25	42.45	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.4e-21	53.19	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 40..146 e-value: 1.3E-33 score: 116.7
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 28..151
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 28..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0196571.1	Cmc07g0196571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding