Cmc07g0196261 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0196261
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr07: 19641970 .. 19644594 (+)
RNA-Seq ExpressionCmc07g0196261
SyntenyCmc07g0196261
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATAAACTTCTTCACACATACCTCTCTCCCTTTGATATGGTATCAGAGCATTTCCACAAAGGAGAATTAGAGCATTACCCAAACGTTACATTACCCTCGTGCAGTCTCCACCATGACAAGATCTGAGAGTTCGACGTCTGGCAACTCCAACTCCTCAACTCCAATCACCTTTTCTGAACTCAACGCCCAACTAAATCCTTTCATCCTTCACCATTAATGGCTGCCAACGTCGGTTGAGGAACACAGGGAACGGATAGCTGATTGGATCCTTGAATGGTCGGTGGAACGCGAAACTCCTATGATAGCTGGCATTTGGATTACTTGAGGGTGGAGTTCGATCCTCTTATATCAAATGGAGATGGTCAGCAGCGCTTGTAGAGGGTGGAGTTCATGCATCCAATGGTCGGTGGAGTTTGAAGGAAATGGAGAGGCGTGCATGAGGTTTATCGTGATGGTTTGAGGAAAGCAAAGGCCGACAGCTTTGAACAAAAGGAAAGGGAGACGAAGAGCGTGAGGCTTTCTTCTTTTTTTTATTAAAATGTATTTTAATTAACTTTTATTTTTATAAATTTGAATAAAAAATATTTTTATTAATTATTTAATGAATTTACCTTTCATGACAACAAATAACTGTCATGTATAAGTTCAATCTGAAAACAGCGTTTTTTCCCACTAAAAACACAAATTTTGACATTTATAATGGATGACATTTAAAAATTATTTGTAAGTGATGACATTTAAAAATTGTCATAGATTTATGACACTTAAAAATTGTCATAAATTCTTCAAATTCAAAAAAATTTACTTTTTCTCGCCAAAAACGCGTTTTTTTATCTTTTATGACAGTTATTTCTTCTCTTCTTTCAATTTGGGATGGAACCAACTGTCATAATAGATGGTTTTTCTTGTAGTGATTCGATTATTCTGACCACCAACTTGGTTTCTACACCACTTGCAAGATCAAGCAACAACTCTTCATGGAGCAGAGCAATGAAACCTACGCTGTTAGGGAAGAACAAGATTTGATTCTTAAGGGAGCGATTGAGAAACCATCAAAAGGTAGTCTTCTTTCAGCTCGAAATTATAATAACGATGTGATAGCCTCATGGATTATTAGTTCCATTTCAAAAAAAATCGCCGCCAACTTAGTCTATAATTGAAGTGTGAAAGAATTATGGGATGAGTTAAAAAGAGAGATATCGGCAGTCTAATAGGCCACATATATACCAGCTACAGAAAGACCTTGTAACTACCACCTAAGGGAATCTTTCAGTTGAGATATATTGCGCAAAGATCACCACCATATGTTAGGAACTTGTTGAAATAGACCCATGGATGAATGCACATGTGTACGGTTAAAGAAGATGATTGATTTTTTTAAAGCAGAGTTTGTAATGGCTTTTCTTATGGGCTTAAATAAGTCATACCTCTCAAATTAGAGCATAGATTTTACTTATTGATCCTTTACCACCAATAAACAAGGTATTTTATCCTATAATCCAAGAAGAAAGACAAAGATCCATTGGATCTACAACTTCTATTGAAAGCATCACCCTAATGGATAACACTGAGAAAAAATTTACGCCCGAAAGATTCAAGAATAAAGACACTCGGCCAATATGCACTAATTGTGGATACAGAGCCATACTGCTGACAAATGCTATAAGCTACACGATTATCCATTAGGACACAGACTAGCAAATACTAATTCAATTCACCAACAGAGACATAGCAACCCTATGCAAACTAAAAATGAGAAGAGAACAAAAACTCCTAAAGACAGTCAGTTTGCATTTTTTGCAAGACTCAATAATGACCAATACTCACAACTCTTGAGTATGCTTCAAACACATCTTAATGTTTCACAAATTGGTGAGAACTCCATGACAGAAACTACCCACATAGCAGGTCCTTGTCTCTTTACCTCACTCACCAATTCTTCTTGAATCATAGATTCTAGTGCATCTTCTCACATATGTCATGATAAATCTATGTTTAAAGAACTTCACAGCATGCAAAGTATGTCAGTTATACTACCTACTAAAGCCCGTTTAAGGTGATATCTCAATATCAAAAGAGGTGATATTGAAAGATGTTCTTTATCCCTAATTTCAAGTATAACCTGTTGTCAGTACTCTACTTAAGAAAGGAAAATACTCTATATCCTTTACTAATTCTAATTATCATTCAGGACAAGTCAGTTTCGAAAATGATGGAGAAAGTTGAACTAATCAGTGGCCTCTACTTGCTCAAAGTTAATGATGAAAAGATTAAAGACTGCCTTAATGAATCTGCTTTCTTTCTTTTTTTTTTTTTTTTTTGTAAAGCCTATGCAACTACATGGCATAATTGATGGGACATCCTTCTATTAGTAGAATAAAGGAATTATCAAAGATAGAAATTGCTGATTCATTAAATTGTAAAGAAATTTCGCATATTTGTCACTTAGCTAAACAAAGGTGTCTTTCATTCCCTGCTTTGAATAATGTTGCTGAGAATATCTTTGATCTTATATATTGTGACATATGGGGTCCTTCTAAAACCAAAACACATGCAGGACATTCTTACTTGCCACTATTGTTAATGTTAAGTCAAGATACACTTGATACATCTTTTGAAAAATAA

mRNA sequence

GATAAACTTCTTCACACATACCTCTCTCCCTTTGATATGGTATCAGAGCATTTCCACAAAGGAGAATTAGAGCATTACCCAAACGTTACATTACCCTCGTGCAGTCTCCACCATGACAAGATCTGAGAGTTCGACGTCTGGCAACTCCAACTCCTCAACTCCAATCACCTTTTCTGAACTCAACGCCCAACTAAATCCTTTCATCCTTCACCATTAATGGCTGCCAACGTCGGTTGAGGAACACAGGGAACGGATAGCTGATTGGATCCTTGAATGGTCGGTGGAACGCGAAACTCCTATGATAGCTGGCATTTGGATTACTTGAGGGTGGAGTTCGATCCTCTTATATCAAATGGAGATGGTCAGCAGCGCTTGTAGAGGGTGGAGTTCATGCATCCAATGGTCGGTGGAGTTTGAAGGAAATGGAGAGGCGTGCATGAGGTTTATCGTGATGGTTTGAGGAAAGCAAAGGCCGACAGCTTTGAACAAAAGGAAAGGGAGACGAAGAGCTGATTCGATTATTCTGACCACCAACTTGGTTTCTACACCACTTGCAAGATCAAGCAACAACTCTTCATGGAGCAGAGCAATGAAACCTACGCTGTTAGGGAAGAACAAGATTTGATTCTTAAGGGAGCGATTGAGAAACCATCAAAAGGACAAGTCAGTTTCGAAAATGATGGAGAAAGTTGAACTAATCAGTGGCCTCTACTTGCTCAAAGTTAATGATGAAAAGATTAAAGACTGCCTTAATGAATCTGCTTTCTTTCTTTTTTTTTTTTTTTTTTGTAAAGCCTATGCAACTACATGGCATAATTGATGGGACATCCTTCTATTAGTAGAATAAAGGAATTATCAAAGATAGAAATTGCTGATTCATTAAATTGTAAAGAAATTTCGCATATTTGTCACTTAGCTAAACAAAGGTGTCTTTCATTCCCTGCTTTGAATAATGTTGCTGAGAATATCTTTGATCTTATATATTGTGACATATGGGGTCCTTCTAAAACCAAAACACATGCAGGACATTCTTACTTGCCACTATTGTTAATGTTAAGTCAAGATACACTTGATACATCTTTTGAAAAATAA

Coding sequence (CDS)

ATGGGACATCCTTCTATTAGTAGAATAAAGGAATTATCAAAGATAGAAATTGCTGATTCATTAAATTGTAAAGAAATTTCGCATATTTGTCACTTAGCTAAACAAAGGTGTCTTTCATTCCCTGCTTTGAATAATGTTGCTGAGAATATCTTTGATCTTATATATTGTGACATATGGGGTCCTTCTAAAACCAAAACACATGCAGGACATTCTTACTTGCCACTATTGTTAATGTTAAGTCAAGATACACTTGATACATCTTTTGAAAAATAA

Protein sequence

MGHPSISRIKELSKIEIADSLNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLLMLSQDTLDTSFEK
Homology
[Close]
BLAST of Cmc07g0196261 vs. NCBI nr
Match: CAE5963143.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 1   MGHPSISRIKELSKIEIADSLNCKEISH--ICHLAKQRCLSFPALNNVAENIFDLIYCDI 60
           +GHPS S+I+ LS+         K+ SH   CHLAKQR LSFP+LNNV++N FDL++ D+
Sbjct: 140 LGHPSFSKIQALSEDLSLSKTKLKDWSHCKTCHLAKQRRLSFPSLNNVSKNPFDLVHLDV 199

Query: 61  WGPSKTKTHAGHSYLPLLL 78
           WGP    +  G  Y   L+
Sbjct: 200 WGPFSVVSTEGFRYFLTLV 218

[Close]
BLAST of Cmc07g0196261 vs. NCBI nr
Match: CAA0373958.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 1   MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDI 60
           +GHPS SR+  LS++        K+ +  H+CHLAKQ+ LSFP+ NN+  + F+L++ D+
Sbjct: 734 LGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDV 793

Query: 61  WGPSKTKTHAGHSY 73
           WGP   +T  G+ Y
Sbjct: 794 WGPFSVETVEGYKY 807

[Close]
BLAST of Cmc07g0196261 vs. NCBI nr
Match: AAD25646.1 (putative retroelement pol polyprotein [Arabidopsis thaliana])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 1   MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDI 60
           +GHPS SR+  LS++        K+ +  H+CHLAKQ+ LSFP+ NN+  + F+L++ D+
Sbjct: 573 LGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDV 632

Query: 61  WGPSKTKTHAGHSY 73
           WGP   +T  G+ Y
Sbjct: 633 WGPFSVETVEGYKY 646

[Close]
BLAST of Cmc07g0196261 vs. NCBI nr
Match: KAA0037194.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK13878.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 21  LNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLL 78
           L CK  +   H  KQ+ LSFPALNNVA NIFDL Y DIWGP KT+THAGH+Y   ++
Sbjct: 119 LLCKASATTWHKPKQKRLSFPALNNVAGNIFDLHY-DIWGPFKTQTHAGHTYFTTIV 174

[Close]
BLAST of Cmc07g0196261 vs. NCBI nr
Match: DAD40346.1 (TPA_asm: hypothetical protein HUJ06_014669 [Nelumbo nucifera])

HSP 1 Score: 71.2 bits (173), Expect = 5.0e-09
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 1   MGHPSISRIKELSKIEIADSLNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWG 60
           MGH S +R+K L +++   SL   +   ICH AKQR LSFP   + + N FDLI+ D WG
Sbjct: 162 MGHLSNTRLKLLRELDHFISLPSSDYCSICHYAKQRKLSFPISQSTSANYFDLIHIDTWG 221

Query: 61  PSKTKTHAGHSYL 74
           P  T +  GH YL
Sbjct: 222 PFSTPSFYGHKYL 234

[Close]
BLAST of Cmc07g0196261 vs. ExPASy TrEMBL
Match: A0A5S9X2Z9 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=C24_LOCUS9445 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-10
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 1   MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDI 60
           +GHPS SR+  LS++        K+ +  H+CHLAKQ+ LSFP+ NN+  + F+L++ D+
Sbjct: 734 LGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDV 793

Query: 61  WGPSKTKTHAGHSY 73
           WGP   +T  G+ Y
Sbjct: 794 WGPFSVETVEGYKY 807

[Close]
BLAST of Cmc07g0196261 vs. ExPASy TrEMBL
Match: Q9SIM3 (Putative retroelement pol polyprotein OS=Arabidopsis thaliana OX=3702 GN=At2g20460 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-10
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 1   MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDI 60
           +GHPS SR+  LS++        K+ +  H+CHLAKQ+ LSFP+ NN+  + F+L++ D+
Sbjct: 573 LGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDV 632

Query: 61  WGPSKTKTHAGHSY 73
           WGP   +T  G+ Y
Sbjct: 633 WGPFSVETVEGYKY 646

[Close]
BLAST of Cmc07g0196261 vs. ExPASy TrEMBL
Match: A0A5A7T140 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00650 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 21  LNCKEISHICHLAKQRCLSFPALNNVAENIFDLIYCDIWGPSKTKTHAGHSYLPLLL 78
           L CK  +   H  KQ+ LSFPALNNVA NIFDL Y DIWGP KT+THAGH+Y   ++
Sbjct: 119 LLCKASATTWHKPKQKRLSFPALNNVAGNIFDLHY-DIWGPFKTQTHAGHTYFTTIV 174

[Close]
BLAST of Cmc07g0196261 vs. ExPASy TrEMBL
Match: A0A1J3DC96 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR9197_c0_g1_i1_g.29187 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 1   MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDI 60
           +GHPS+SRI  +SK         K ++  HICHLAKQR LSFP+ NN+     +L++ D+
Sbjct: 55  LGHPSLSRITTISKTLGISKHKNKGLAYCHICHLAKQRKLSFPSPNNICNTNLELLHIDV 114

Query: 61  WGPSKTKTHAGHSY 73
           WGP   +T  G+ Y
Sbjct: 115 WGPFSVETLDGYKY 128

[Close]
BLAST of Cmc07g0196261 vs. ExPASy TrEMBL
Match: A0A1J3HJY9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR2272_c1_g1_i1_g.6347 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 1   MGHPSISRIKELSKIEIADSLNCKEIS--HICHLAKQRCLSFPALNNVAENIFDLIYCDI 60
           +GHPS+SRI  +SK         K ++  HICHLAKQR LSFP  NN+     +L++ D+
Sbjct: 55  LGHPSLSRITTISKTLGISKHKNKGLAYCHICHLAKQRKLSFPYPNNICNTNLELLHIDV 114

Query: 61  WGPSKTKTHAGHSY 73
           WGP   +T  G+ Y
Sbjct: 115 WGPFSVETLDGYKY 128

The following BLAST results are available for this feature:
BLAST of Cmc07g0196261 vs. NCBI nr
Match NameE-valueIdentityDescription
CAE5963143.11.2e-1046.84unnamed protein product [Arabidopsis arenosa][more]
CAA0373958.11.7e-0941.89unnamed protein product [Arabidopsis thaliana][more]
AAD25646.11.7e-0941.89putative retroelement pol polyprotein [Arabidopsis thaliana][more]
KAA0037194.12.2e-0961.40Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
DAD40346.15.0e-0946.58TPA_asm: hypothetical protein HUJ06_014669 [Nelumbo nucifera][more]
BLAST of Cmc07g0196261 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc07g0196261 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5S9X2Z98.3e-1041.89Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=C24_LOCUS9445 PE=3 SV... [more]
Q9SIM38.3e-1041.89Putative retroelement pol polyprotein OS=Arabidopsis thaliana OX=3702 GN=At2g204... [more]
A0A5A7T1401.1e-0961.40Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A1J3DC963.2e-0944.59Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccae... [more]
A0A1J3HJY97.0e-0944.59Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccae... [more]
BLAST of Cmc07g0196261 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0196261.1Cmc07g0196261.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding