Cmc07g0195731 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0195731
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 19070597 .. 19071373 (-)
RNA-Seq Expression	Cmc07g0195731
Synteny	Cmc07g0195731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGAAATTTAATATTTATTTATTGTATTTTGGAACACATGTATAAAATATCTTTTGATATTAATGAAGCTTTCATTTTCTATAAGAGTATTCAAATCTGTTCTGCTATACTTGAAAACAACTTATATAAGTTAAGACCAACACGAGAAAATCTTATCTTAAATACTAAAATGTTTAGAATAGTTGAAACTCAGAATAAAAGACAAAAAGTTTCTTATAATACCTATTTATGGCACTTAAGACTAGGTCATATAAATCTCAATATGATTGGGAGATTAGTTAAAAGTGGACTTCTAGGTGAGTTAGAAGATAACTCTTTACCTCCTTGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGATCTTTTACTGGAAAAGGTCTTAGAGCCAAAATACTTTTAGAGCTCGTACATTCGAACCTCTATGGACCAATGAACGTCAAAGCTCGAGGAGGGTACAAATATTTCATTAGTTTTATTGATGATTATTCTAAGTATGGTCATGTTTATCTAATTCATCACAAGTCTGATTCTCTTGAAAAGTTTAAAGAATATAAGGTTGAAGTTAAGAATGAATTAGGTAAAAAAAAAATAAAGATACTTCGATTAGATCGAGGTGGAGAGTATATGGACTTACGATTCCAAGACTATTTGATAGAACATGAAATCCAGTCACAACTCTCTGCACCTAGTACACCTCAGCAAAATGGTGTATCAAAAAGAAGAAACCAAACCTTGTTAGACATGGTTCGCTCTATGATGAGCTTTGCTTAG

mRNA sequence

ATGAAAAGAAATTTAATATTTATTTATTGTATTTTGGAACACATGTATAAAATATCTTTTGATATTAATGAAGCTTTCATTTTCTATAAGAGTATTCAAATCTGTTCTGCTATACTTGAAAACAACTTATATAAGTTAAGACCAACACGAGAAAATCTTATCTTAAATACTAAAATGTTTAGAATAGTTGAAACTCAGAATAAAAGACAAAAAGTTTCTTATAATACCTATTTATGGCACTTAAGACTAGGTCATATAAATCTCAATATGATTGGGAGATTAGTTAAAAGTGGACTTCTAGGTGAGTTAGAAGATAACTCTTTACCTCCTTGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGATCTTTTACTGGAAAAGGTCTTAGAGCCAAAATACTTTTAGAGCTCGTACATTCGAACCTCTATGGACCAATGAACGTCAAAGCTCGAGGAGGGTACAAATATTTCATTAGTTTTATTGATGATTATTCTAAGTATGGTCATGTTTATCTAATTCATCACAAGTCTGATTCTCTTGAAAAGTTTAAAGAATATAAGGTTGAAGTTAAGAATGAATTAGGTAAAAAAAAAATAAAGATACTTCGATTAGATCGAGGTGGAGAGTATATGGACTTACGATTCCAAGACTATTTGATAGAACATGAAATCCAGTCACAACTCTCTGCACCTAGTACACCTCAGCAAAATGGTGTATCAAAAAGAAGAAACCAAACCTTGTTAGACATGGTTCGCTCTATGATGAGCTTTGCTTAG

Coding sequence (CDS)

ATGAAAAGAAATTTAATATTTATTTATTGTATTTTGGAACACATGTATAAAATATCTTTTGATATTAATGAAGCTTTCATTTTCTATAAGAGTATTCAAATCTGTTCTGCTATACTTGAAAACAACTTATATAAGTTAAGACCAACACGAGAAAATCTTATCTTAAATACTAAAATGTTTAGAATAGTTGAAACTCAGAATAAAAGACAAAAAGTTTCTTATAATACCTATTTATGGCACTTAAGACTAGGTCATATAAATCTCAATATGATTGGGAGATTAGTTAAAAGTGGACTTCTAGGTGAGTTAGAAGATAACTCTTTACCTCCTTGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGATCTTTTACTGGAAAAGGTCTTAGAGCCAAAATACTTTTAGAGCTCGTACATTCGAACCTCTATGGACCAATGAACGTCAAAGCTCGAGGAGGGTACAAATATTTCATTAGTTTTATTGATGATTATTCTAAGTATGGTCATGTTTATCTAATTCATCACAAGTCTGATTCTCTTGAAAAGTTTAAAGAATATAAGGTTGAAGTTAAGAATGAATTAGGTAAAAAAAAAATAAAGATACTTCGATTAGATCGAGGTGGAGAGTATATGGACTTACGATTCCAAGACTATTTGATAGAACATGAAATCCAGTCACAACTCTCTGCACCTAGTACACCTCAGCAAAATGGTGTATCAAAAAGAAGAAACCAAACCTTGTTAGACATGGTTCGCTCTATGATGAGCTTTGCTTAG

Protein sequence

MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMFRIVETQNKRQKVSYNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGKMTKRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSDSLEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGVSKRRNQTLLDMVRSMMSFA

Homology

[Close]

BLAST of Cmc07g0195731 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 417.2 bits (1071), Expect = 1.1e-112
Identity = 209/258 (81.01%), Postives = 232/258 (89.92%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           MKRNLI I CILEH+Y ISF++NE FI  K IQICSAI ENNLYKLRPTR N++LNT+MF
Sbjct: 367 MKRNLISIACILEHIYTISFEVNEVFILCKGIQICSAIRENNLYKLRPTRANVVLNTEMF 426

Query: 61  RIVETQNKRQKVSYNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGKMT 120
           R +ETQNK+QKVS N YLWHLRLGHINLN I RLVKSG+L +LEDNSLPPCESCLEGKMT
Sbjct: 427 RTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGKMT 486

Query: 121 KRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSDSL 180
           KRSFTGKGLRAK+ LELVHS+L GPMNVKARGGY+YFISFIDD+S+YGHVYL+HHKS+S 
Sbjct: 487 KRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESF 546

Query: 181 EKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGVS 240
           EKFKEYK EV+NE+G K IK LR DRGGEYMD +FQDYLIE  IQSQLSAPSTPQQNGVS
Sbjct: 547 EKFKEYKAEVENEIG-KTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVS 606

Query: 241 KRRNQTLLDMVRSMMSFA 259
           +RRN+TLLDMVRSMMS+A
Sbjct: 607 ERRNRTLLDMVRSMMSYA 623

[Close]

BLAST of Cmc07g0195731 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 378.3 bits (970), Expect = 5.5e-101
Identity = 190/260 (73.08%), Postives = 222/260 (85.38%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           +KRNL+ + C++EHMY I+F +NEAFI+   + ICSA LENNLY LRP     +LN +MF
Sbjct: 271 IKRNLVSVSCLIEHMYSINFSMNEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMF 330

Query: 61  RIVETQNKRQKVS--YNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGK 120
           R   TQNKRQ++S   NTYLWHLRLGHINL+ IGRLVK+GLL +L+D SLPPCESCLEGK
Sbjct: 331 RTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGK 390

Query: 121 MTKRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSD 180
           MTKR FTGKG RAK  LEL+HS+L GPMNVKARGG++YFISFIDDYS+YG++YL+ HKS+
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 181 SLEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNG 240
           +LEKFKEYK EV+N L  KKIKILR DRGGEYMDLRFQDY+IEH IQSQLSAP TPQQNG
Sbjct: 451 ALEKFKEYKTEVENLL-SKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNG 510

Query: 241 VSKRRNQTLLDMVRSMMSFA 259
           VS+RRN+TLLDMVRSMMS+A
Sbjct: 511 VSERRNRTLLDMVRSMMSYA 529

[Close]

BLAST of Cmc07g0195731 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 370.9 bits (951), Expect = 8.7e-99
Identity = 187/260 (71.92%), Postives = 218/260 (83.85%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           +KRNL+ + C++EHMY I+F +NEAFI+   + ICSA LENNLY LRP     +LN +MF
Sbjct: 271 IKRNLVSVSCLIEHMYSINFSMNEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMF 330

Query: 61  RIVETQNKRQKVS--YNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGK 120
           R   TQNKRQ++S   NTYLWHLRLGHINL+ IGRLVK GLL +L+D SLPPCESCLEGK
Sbjct: 331 RTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGK 390

Query: 121 MTKRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSD 180
           MTKR FTGKG RAK  LEL+HS+L GPMNVKARG ++YFISFIDDYS+YG++YL+ HKS+
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 181 SLEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNG 240
           +LEKFKEYK EV+N L  KKIKI R DRGGEYMDL FQDY+IEH IQSQLSAP TPQQNG
Sbjct: 451 ALEKFKEYKTEVENLL-SKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNG 510

Query: 241 VSKRRNQTLLDMVRSMMSFA 259
           VS+RRN+TLLDMVRSMMS+A
Sbjct: 511 VSERRNRTLLDMVRSMMSYA 529

[Close]

BLAST of Cmc07g0195731 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 3.3e-98
Identity = 187/259 (72.20%), Postives = 217/259 (83.78%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           +KRNL+ + C++EHMY ISF +NEAFI    + ICS  LE+NLY L+P     +LN +MF
Sbjct: 243 IKRNLVSVSCLIEHMYSISFSMNEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMF 302

Query: 61  RIVETQNKRQKVS--YNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGK 120
           R   TQNKRQ++S   NTYLWHLRLGHINL+ IGRLVK+GLL +LED+SLPPCESCLEGK
Sbjct: 303 RTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGK 362

Query: 121 MTKRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSD 180
           MTKR FTGKG RAK  LEL+HS+L GPMNVKA GG++YFISFIDDYS YG++YLI HKS+
Sbjct: 363 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSE 422

Query: 181 SLEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNG 240
           +LEKFKEYK EV+N L  KKIKILR DRGGEYMDLRFQDY+IEH IQSQLSAP TPQQNG
Sbjct: 423 ALEKFKEYKTEVENLL-SKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNG 482

Query: 241 VSKRRNQTLLDMVRSMMSF 258
           VS+RRN+TLLDMV SMMS+
Sbjct: 483 VSERRNRTLLDMVHSMMSY 500

[Close]

BLAST of Cmc07g0195731 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 7.7e-95
Identity = 184/260 (70.77%), Postives = 216/260 (83.08%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           +KRNL+F+ C++EHMY I+F +NEAFI         A LE+NLY LRP     +LN +MF
Sbjct: 246 IKRNLVFVSCLIEHMYSINFSMNEAFISKN-----GAKLEDNLYVLRPNEAKAVLNHEMF 305

Query: 61  RIVETQNKRQKVS--YNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGK 120
           R   TQNKRQ++S   NTYLWHLRL HINL+ IGRLVK+GLL +L+D+SLPPCESCLEGK
Sbjct: 306 RTANTQNKRQRISPNNNTYLWHLRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGK 365

Query: 121 MTKRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSD 180
           MTKR FTGK  RAK  LEL+HS+L GPMNVKARGG++YFISFIDDYS+YG++YL+ HK +
Sbjct: 366 MTKRPFTGKDYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYE 425

Query: 181 SLEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNG 240
           +LEKFKEYK EV+N L  KKIKILR DRGGEYMDLRFQDY+IEH IQSQLSAP TPQQNG
Sbjct: 426 ALEKFKEYKTEVENLL-SKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNG 485

Query: 241 VSKRRNQTLLDMVRSMMSFA 259
           VS+RRN+TLLDMVRSMMS+A
Sbjct: 486 VSERRNRTLLDMVRSMMSYA 499

[Close]

BLAST of Cmc07g0195731 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.3e-32
Identity = 70/181 (38.67%), Postives = 112/181 (61.88%), Query Frame = 0


Query: 78  LWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGKMTKRSFTGKGLRAKILLEL 137
           LWH R+GH++   +  L K  L+   +  ++ PC+ CL GK  + SF     R   +L+L
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDL 483

Query: 138 VHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSDSLEKFKEYKVEVKNELGKK 197
           V+S++ GPM +++ GG KYF++FIDD S+   VY++  K    + F+++   V+ E G +
Sbjct: 484 VYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETG-R 543

Query: 198 KIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGVSKRRNQTLLDMVRSMMSF 257
           K+K LR D GGEY    F++Y   H I+ + + P TPQ NGV++R N+T+++ VRSM+  
Sbjct: 544 KLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRM 603

Query: 258 A 259
           A
Sbjct: 604 A 603

[Close]

BLAST of Cmc07g0195731 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-17
Identity = 58/193 (30.05%), Postives = 97/193 (50.26%), Query Frame = 0


Query: 75  NTYLWHLRLGHINLNMIGRLVKSGLLGELE-----DNSLPPCESCLEGKMTKRSFTGKGL 134
           N  LWH R GHI+   +  + +  +  +       + S   CE CL GK  +  F  K L
Sbjct: 414 NFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPF--KQL 473

Query: 135 RAKILLE----LVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSDSLEKFKE 194
           + K  ++    +VHS++ GP+         YF+ F+D ++ Y   YLI +KSD    F++
Sbjct: 474 KDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQD 533

Query: 195 YKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGVSKRRNQ 254
           +  + +      K+  L +D G EY+    + + ++  I   L+ P TPQ NGVS+R  +
Sbjct: 534 FVAKSEAHF-NLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIR 593

Query: 255 TLLDMVRSMMSFA 259
           T+ +  R+M+S A
Sbjct: 594 TITEKARTMVSGA 603

[Close]

BLAST of Cmc07g0195731 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-13
Identity = 48/181 (26.52%), Postives = 95/181 (52.49%), Query Frame = 0


Query: 79  WHLRLGHINLNMIGRLVKSGLLGELE-DNSLPPCESCLEGKMTKRSFTGKGLRAKILLEL 138
           WH RLGH   +++  ++ +  L  L   +    C  CL  K  K  F+   + +   LE 
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 139 VHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSDSLEKFKEYKVEVKNELGKK 198
           ++S+++    + +   Y+Y++ F+D +++Y  +Y +  KS   E F  +K  ++N   + 
Sbjct: 527 IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRF-QT 586

Query: 199 KIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGVSKRRNQTLLDMVRSMMSF 258
           +I     D GGE++ L   +Y  +H I    S P TP+ NG+S+R+++ +++   +++S 
Sbjct: 587 RIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSH 643

[Close]

BLAST of Cmc07g0195731 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.5e-13
Identity = 54/208 (25.96%), Postives = 102/208 (49.04%), Query Frame = 0


Query: 63  VETQNKRQKVSYNTY-LWHLRLGHINLNMIGRLVKSGLLGELEDNSLP-------PCESC 122
           +   NK + V+   Y L H  LGH N   I + +K   +  L+++ +         C  C
Sbjct: 577 INNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDC 636

Query: 123 LEGKMTKRSFTGKGLRAKIL-----LELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGH 182
           L GK TK     KG R K        + +H++++GP++   +    YFISF D+ +++  
Sbjct: 637 LIGKSTKHRHV-KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQW 696

Query: 183 VYLIHHKSDS--LEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQ 242
           VY +H + +   L  F      +KN+    ++ ++++DRG EY +     +     I + 
Sbjct: 697 VYPLHDRREESILNVFTSILAFIKNQF-NARVLVIQMDRGSEYTNKTLHKFFTNRGITAC 756

Query: 243 LSAPSTPQQNGVSKRRNQTLLDMVRSMM 256
            +  +  + +GV++R N+TLL+  R+++
Sbjct: 757 YTTTADSRAHGVAERLNRTLLNDCRTLL 782

[Close]

BLAST of Cmc07g0195731 vs. ExPASy Swiss-Prot
Match: P25384 (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 4.5e-13
Identity = 54/208 (25.96%), Postives = 102/208 (49.04%), Query Frame = 0


Query: 63  VETQNKRQKVSYNTY-LWHLRLGHINLNMIGRLVKSGLLGELEDNSLP-------PCESC 122
           +   NK + V+   Y L H  LGH N   I + +K   +  L+++ +         C  C
Sbjct: 577 INNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDC 636

Query: 123 LEGKMTKRSFTGKGLRAKIL-----LELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGH 182
           L GK TK     KG R K        + +H++++GP++   +    YFISF D+ +++  
Sbjct: 637 LIGKSTKHRHV-KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQW 696

Query: 183 VYLIHHKSDS--LEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQ 242
           VY +H + +   L  F      +KN+    ++ ++++DRG EY +     +     I + 
Sbjct: 697 VYPLHDRREESILNVFTSILAFIKNQF-NARVLVIQMDRGSEYTNKTLHKFFTNRGITAC 756

Query: 243 LSAPSTPQQNGVSKRRNQTLLDMVRSMM 256
            +  +  + +GV++R N+TLL+  R+++
Sbjct: 757 YTTTADSRAHGVAERLNRTLLNDCRTLL 782

[Close]

BLAST of Cmc07g0195731 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 5.1e-113
Identity = 209/258 (81.01%), Postives = 232/258 (89.92%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           MKRNLI I CILEH+Y ISF++NE FI  K IQICSAI ENNLYKLRPTR N++LNT+MF
Sbjct: 367 MKRNLISIACILEHIYTISFEVNEVFILCKGIQICSAIRENNLYKLRPTRANVVLNTEMF 426

Query: 61  RIVETQNKRQKVSYNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGKMT 120
           R +ETQNK+QKVS N YLWHLRLGHINLN I RLVKSG+L +LEDNSLPPCESCLEGKMT
Sbjct: 427 RTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGKMT 486

Query: 121 KRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSDSL 180
           KRSFTGKGLRAK+ LELVHS+L GPMNVKARGGY+YFISFIDD+S+YGHVYL+HHKS+S 
Sbjct: 487 KRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESF 546

Query: 181 EKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNGVS 240
           EKFKEYK EV+NE+G K IK LR DRGGEYMD +FQDYLIE  IQSQLSAPSTPQQNGVS
Sbjct: 547 EKFKEYKAEVENEIG-KTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVS 606

Query: 241 KRRNQTLLDMVRSMMSFA 259
           +RRN+TLLDMVRSMMS+A
Sbjct: 607 ERRNRTLLDMVRSMMSYA 623

[Close]

BLAST of Cmc07g0195731 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.6e-101
Identity = 190/260 (73.08%), Postives = 222/260 (85.38%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           +KRNL+ + C++EHMY I+F +NEAFI+   + ICSA LENNLY LRP     +LN +MF
Sbjct: 271 IKRNLVSVSCLIEHMYSINFSMNEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMF 330

Query: 61  RIVETQNKRQKVS--YNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGK 120
           R   TQNKRQ++S   NTYLWHLRLGHINL+ IGRLVK+GLL +L+D SLPPCESCLEGK
Sbjct: 331 RTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGK 390

Query: 121 MTKRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSD 180
           MTKR FTGKG RAK  LEL+HS+L GPMNVKARGG++YFISFIDDYS+YG++YL+ HKS+
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 181 SLEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNG 240
           +LEKFKEYK EV+N L  KKIKILR DRGGEYMDLRFQDY+IEH IQSQLSAP TPQQNG
Sbjct: 451 ALEKFKEYKTEVENLL-SKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNG 510

Query: 241 VSKRRNQTLLDMVRSMMSFA 259
           VS+RRN+TLLDMVRSMMS+A
Sbjct: 511 VSERRNRTLLDMVRSMMSYA 529

[Close]

BLAST of Cmc07g0195731 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 4.2e-99
Identity = 187/260 (71.92%), Postives = 218/260 (83.85%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           +KRNL+ + C++EHMY I+F +NEAFI+   + ICSA LENNLY LRP     +LN +MF
Sbjct: 271 IKRNLVSVSCLIEHMYSINFSMNEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMF 330

Query: 61  RIVETQNKRQKVS--YNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGK 120
           R   TQNKRQ++S   NTYLWHLRLGHINL+ IGRLVK GLL +L+D SLPPCESCLEGK
Sbjct: 331 RTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGK 390

Query: 121 MTKRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSD 180
           MTKR FTGKG RAK  LEL+HS+L GPMNVKARG ++YFISFIDDYS+YG++YL+ HKS+
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 181 SLEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNG 240
           +LEKFKEYK EV+N L  KKIKI R DRGGEYMDL FQDY+IEH IQSQLSAP TPQQNG
Sbjct: 451 ALEKFKEYKTEVENLL-SKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNG 510

Query: 241 VSKRRNQTLLDMVRSMMSFA 259
           VS+RRN+TLLDMVRSMMS+A
Sbjct: 511 VSERRNRTLLDMVRSMMSYA 529

[Close]

BLAST of Cmc07g0195731 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.6e-98
Identity = 187/259 (72.20%), Postives = 217/259 (83.78%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           +KRNL+ + C++EHMY ISF +NEAFI    + ICS  LE+NLY L+P     +LN +MF
Sbjct: 243 IKRNLVSVSCLIEHMYSISFSMNEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMF 302

Query: 61  RIVETQNKRQKVS--YNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGK 120
           R   TQNKRQ++S   NTYLWHLRLGHINL+ IGRLVK+GLL +LED+SLPPCESCLEGK
Sbjct: 303 RTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGK 362

Query: 121 MTKRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSD 180
           MTKR FTGKG RAK  LEL+HS+L GPMNVKA GG++YFISFIDDYS YG++YLI HKS+
Sbjct: 363 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSE 422

Query: 181 SLEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNG 240
           +LEKFKEYK EV+N L  KKIKILR DRGGEYMDLRFQDY+IEH IQSQLSAP TPQQNG
Sbjct: 423 ALEKFKEYKTEVENLL-SKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNG 482

Query: 241 VSKRRNQTLLDMVRSMMSF 258
           VS+RRN+TLLDMV SMMS+
Sbjct: 483 VSERRNRTLLDMVHSMMSY 500

[Close]

BLAST of Cmc07g0195731 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.7e-95
Identity = 184/260 (70.77%), Postives = 216/260 (83.08%), Query Frame = 0


Query: 1   MKRNLIFIYCILEHMYKISFDINEAFIFYKSIQICSAILENNLYKLRPTRENLILNTKMF 60
           +KRNL+F+ C++EHMY I+F +NEAFI         A LE+NLY LRP     +LN +MF
Sbjct: 246 IKRNLVFVSCLIEHMYSINFSMNEAFISKN-----GAKLEDNLYVLRPNEAKAVLNHEMF 305

Query: 61  RIVETQNKRQKVS--YNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGK 120
           R   TQNKRQ++S   NTYLWHLRL HINL+ IGRLVK+GLL +L+D+SLPPCESCLEGK
Sbjct: 306 RTANTQNKRQRISPNNNTYLWHLRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGK 365

Query: 121 MTKRSFTGKGLRAKILLELVHSNLYGPMNVKARGGYKYFISFIDDYSKYGHVYLIHHKSD 180
           MTKR FTGK  RAK  LEL+HS+L GPMNVKARGG++YFISFIDDYS+YG++YL+ HK +
Sbjct: 366 MTKRPFTGKDYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYE 425

Query: 181 SLEKFKEYKVEVKNELGKKKIKILRLDRGGEYMDLRFQDYLIEHEIQSQLSAPSTPQQNG 240
           +LEKFKEYK EV+N L  KKIKILR DRGGEYMDLRFQDY+IEH IQSQLSAP TPQQNG
Sbjct: 426 ALEKFKEYKTEVENLL-SKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNG 485

Query: 241 VSKRRNQTLLDMVRSMMSFA 259
           VS+RRN+TLLDMVRSMMS+A
Sbjct: 486 VSERRNRTLLDMVRSMMSYA 499

[Close]

BLAST of Cmc07g0195731 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-07
Identity = 32/88 (36.36%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 63  VET--QNKRQKVSYNTYLWHLRLGHINLNMIGRLVKSGLLGELEDNSLPPCESCLEGKMT 122
           VET   N  +     T LWH RL H++   +  LVK G L   + +SL  CE C+ GK  
Sbjct: 54  VETGESNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTH 113

Query: 123 KRSFTGKGLRAKILLELVHSNLYGPMNV 149
           + +F+      K  L+ VHS+L+G  +V
Sbjct: 114 RVNFSTGQHTTKNPLDYVHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Cmc07g0195731 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.1e-112	81.01	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	5.5e-101	73.08	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	8.7e-99	71.92	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	3.3e-98	72.20	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	7.7e-95	70.77	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0195731 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.3e-32	38.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.9e-17	30.05	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.0e-13	26.52	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	4.5e-13	25.96	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P25384	4.5e-13	25.96	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc07g0195731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	5.1e-113	81.01	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	2.6e-101	73.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	4.2e-99	71.92	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	1.6e-98	72.20	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	3.7e-95	70.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]

BLAST of Cmc07g0195731 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	6.4e-07	36.36	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 69..119 e-value: 4.5E-12 score: 45.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 129..258 e-value: 7.4E-24 score: 86.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 127..258 score: 16.287306
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 130..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0195731.1	Cmc07g0195731.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding