Cmc07g0193941 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0193941
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr07: 16227084 .. 16227641 (+)
RNA-Seq Expression	Cmc07g0193941
Synteny	Cmc07g0193941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGAACAGCTGAAACTCGGAATAAAAGACAAAAAGTTTCTTCCAATGCCTTCTTATGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGAAAGATTGGTTAAAAGTGGACTTCTAAATCAGTTAGAAGATAACTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTACTAGAAAAGATCTTAGAGCCAAAACACCTTTAAAGCTCGTACATTCGGACCTTTGTGGACCAATGAATGTCAAAGTTCGGGGAGGATATGAACATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAATTAGGTAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTGCAATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACTGA

mRNA sequence

ATGTTTAGAACAGCTGAAACTCGGAATAAAAGACAAAAAGTTTCTTCCAATGCCTTCTTATGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGAAAGATTGGTTAAAAGTGGACTTCTAAATCAGTTAGAAGATAACTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTACTAGAAAAGATCTTAGAGCCAAAACACCTTTAAAGCTCGTACATTCGGACCTTTGTGGACCAATGAATGTCAAAGTTCGGGGAGGATATGAACATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAATTAGGTAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTGCAATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACTGA

Coding sequence (CDS)

ATGTTTAGAACAGCTGAAACTCGGAATAAAAGACAAAAAGTTTCTTCCAATGCCTTCTTATGGCACTTAAGACTTGGTCACATAAATCTCAATAGGATTGAAAGATTGGTTAAAAGTGGACTTCTAAATCAGTTAGAAGATAACTCTTTACCTCCATGTGATTCTTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTACTAGAAAAGATCTTAGAGCCAAAACACCTTTAAAGCTCGTACATTCGGACCTTTGTGGACCAATGAATGTCAAAGTTCGGGGAGGATATGAACATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAATTAGGTAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGACTTGCAATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAACGGTGTATCAGAAAGAAGAAACTGA

Protein sequence

MFRTAETRNKRQKVSSNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLEGKMTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQNGVSERRN

Homology

[Close]

BLAST of Cmc07g0193941 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 340.5 bits (872), Expect = 9.1e-90
Identity = 164/185 (88.65%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVSSNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLEGK 60
           MFRT ET+NK+QKVSSNA+LWHLRLGHINLNRIERLVKSG+LNQLEDNSLPPC+SCLEGK
Sbjct: 425 MFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGK 484

Query: 61  MTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNKSD 120
           MTKRSFT K LRAK PL+LVHSDLCGPMNVK RGGYE+FISFIDD+SRYGHVYL+ +KS+
Sbjct: 485 MTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSE 544

Query: 121 SFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQNGV 180
           SFEKFKEYKAEVENE+GKTIKTLRSDRGGEYMD +FQDYLIE GIQSQLSAPSTPQQNGV
Sbjct: 545 SFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGV 604

Query: 181 SERRN 186
           SERRN
Sbjct: 605 SERRN 609

[Close]

BLAST of Cmc07g0193941 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-78
Identity = 145/187 (77.54%), Postives = 168/187 (89.84%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVS--SNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLE 60
           MFRTA T+NKRQ++S  +N +LWHLRLGHINL+RI RLVK+GLLN+L+D SLPPC+SCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNK 120
           GKMTKR FT K  RAK PL+L+HSDLCGPMNVK RGG+E+FISFIDDYSRYG++YL+++K
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SDSFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQN 180
           S++ EKFKEYK EVEN L K IK LRSDRGGEYMDL+FQDY+IEHGIQSQLSAP TPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 509 GVSERRN 515

[Close]

BLAST of Cmc07g0193941 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-78
Identity = 146/187 (78.07%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVSS--NAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLE 60
           MFRTA T+NKRQ++SS  N +LWHLRLGHINL+RI RLVK+GLLN+LED+SLPPC+SCLE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  GKMTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNK 120
           GKMTKR FT K  RAK PL+L+HSDLCGPMNVK  GG+E+FISFIDDYS YG++YLI++K
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHK 420

Query: 121 SDSFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQN 180
           S++ EKFKEYK EVEN L K IK LRSDRGGEYMDL+FQDY+IEHGIQSQLSAP TPQQN
Sbjct: 421 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 480

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 481 GVSERRN 487

[Close]

BLAST of Cmc07g0193941 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 301.6 bits (771), Expect = 4.7e-78
Identity = 144/187 (77.01%), Postives = 168/187 (89.84%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVS--SNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLE 60
           MFRTA T+NKRQ++S  +N +LWHLRL HINL+RI RLVK+GLLN+L+D+SLPPC+SCLE
Sbjct: 299 MFRTANTQNKRQRISPNNNTYLWHLRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLE 358

Query: 61  GKMTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNK 120
           GKMTKR FT KD RAK PL+L+HSDLCGPMNVK RGG+E+FISFIDDYSRYG++YL+++K
Sbjct: 359 GKMTKRPFTGKDYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 418

Query: 121 SDSFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQN 180
            ++ EKFKEYK EVEN L K IK LRSDRGGEYMDL+FQDY+IEHGIQSQLSAP TPQQN
Sbjct: 419 YEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 478

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 479 GVSERRN 485

[Close]

BLAST of Cmc07g0193941 vs. NCBI nr
Match: KAA0050872.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.3 bits (765), Expect = 2.3e-77
Identity = 146/176 (82.95%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVSSNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLEGK 60
           +FR A+T+NKRQKVS NAFLWHLRLGHINLN I RLVKSGLL+QLEDNSLPPCDSCLEGK
Sbjct: 110 IFRKAKTQNKRQKVSFNAFLWHLRLGHINLNGIGRLVKSGLLSQLEDNSLPPCDSCLEGK 169

Query: 61  MTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNKSD 120
           MT+RSFTRK LRAKTPL+LVHSDLCGPMNVK RGGY++FISFID+YSRYGHVYLIQNK D
Sbjct: 170 MTQRSFTRKGLRAKTPLELVHSDLCGPMNVKARGGYKYFISFIDNYSRYGHVYLIQNKFD 229

Query: 121 SFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEH--GIQSQLSAPST 175
           SFEKFKEYKAEVENE GKTIKT RSDRGGEYMDL+FQDYLIEH   ++++   PS+
Sbjct: 230 SFEKFKEYKAEVENESGKTIKTFRSDRGGEYMDLRFQDYLIEHKAEVENESDRPSS 285

[Close]

BLAST of Cmc07g0193941 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.8e-36
Identity = 71/166 (42.77%), Postives = 106/166 (63.86%), Query Frame = 0


Query: 20  LWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLEGKMTKRSFTRKDLRAKTPLKL 79
           LWH R+GH++   ++ L K  L++  +  ++ PCD CL GK  + SF     R    L L
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDL 483

Query: 80  VHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENELGKT 139
           V+SD+CGPM ++  GG ++F++FIDD SR   VY+++ K   F+ F+++ A VE E G+ 
Sbjct: 484 VYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRK 543

Query: 140 IKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQNGVSERRN 186
           +K LRSD GGEY   +F++Y   HGI+ + + P TPQ NGV+ER N
Sbjct: 544 LKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMN 589

[Close]

BLAST of Cmc07g0193941 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-23
Identity = 67/181 (37.02%), Postives = 94/181 (51.93%), Query Frame = 0


Query: 13  KVSSNAFLWHLRLGHIN------LNRIERLVKSGLLNQLEDNSLPPCDSCLEGKMTKRSF 72
           K  +N  LWH R GHI+      + R        LLN LE  S   C+ CL GK  +  F
Sbjct: 410 KHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE-LSCEICEPCLNGKQARLPF 469

Query: 73  TRKDLRAKT----PLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNKSDSF 132
             K L+ KT    PL +VHSD+CGP+         +F+ F+D ++ Y   YLI+ KSD F
Sbjct: 470 --KQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVF 529

Query: 133 EKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQNGVSE 184
             F+++ A+ E      +  L  D G EY+  + + + ++ GI   L+ P TPQ NGVSE
Sbjct: 530 SMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSE 587

[Close]

BLAST of Cmc07g0193941 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-19
Identity = 56/166 (33.73%), Postives = 91/166 (54.82%), Query Frame = 0


Query: 21  WHLRLGHINLNRIERLVKSGLLNQLE-DNSLPPCDSCLEGKMTKRSFTRKDLRAKTPLKL 80
           WH RLGH +L  +  ++ +  L  L   + L  C  C   K  K  F+   + +  PL+ 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 81  VHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENELGKT 140
           ++SD+     + +   Y +++ F+D ++RY  +Y ++ KS   + F  +K+ VEN     
Sbjct: 506 IYSDVWSSPILSI-DNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 141 IKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQNGVSERRN 186
           I TL SD GGE++ L  +DYL +HGI    S P TP+ NG+SER++
Sbjct: 566 IGTLYSDNGGEFVVL--RDYLSQHGISHFTSPPHTPEHNGLSERKH 608

[Close]

BLAST of Cmc07g0193941 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.4e-18
Identity = 52/166 (31.33%), Postives = 87/166 (52.41%), Query Frame = 0


Query: 21  WHLRLGHINLNRIERLVKSGLLNQLE-DNSLPPCDSCLEGKMTKRSFTRKDLRAKTPLKL 80
           WH RLGH   + +  ++ +  L+ L   +    C  CL  K  K  F++  + +  PL+ 
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 81  VHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNKSDSFEKFKEYKAEVENELGKT 140
           ++SD+     +     Y +++ F+D ++RY  +Y ++ KS   E F  +K  +EN     
Sbjct: 527 IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 586

Query: 141 IKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQNGVSERRN 186
           I T  SD GGE++ L   +Y  +HGI    S P TP+ NG+SER++
Sbjct: 587 IGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKH 629

[Close]

BLAST of Cmc07g0193941 vs. ExPASy Swiss-Prot
Match: P0C2J7 (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 44/185 (23.78%), Postives = 79/185 (42.70%), Query Frame = 0


Query: 9   NKRQKVSSNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPP----CDSCLEGKMTKR 68
           NKR     +A   H R+GH  + +IE  +K     +  D    P    C +C   K TKR
Sbjct: 551 NKRSITLEDA---HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKR 610

Query: 69  SFTRKDLRAKT----PLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRY--GHVYLIQNK 128
           +     +   +    P      D+ GP++        + +  +D+ +RY     +  +N 
Sbjct: 611 NHYTGSMNNHSTDHEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNA 670

Query: 129 SDSFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQN 184
                + ++    VE +  + ++ + SDRG E+ + Q ++Y I  GI   L++      N
Sbjct: 671 ETILAQIRKNIQYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAAN 730

[Close]

BLAST of Cmc07g0193941 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.4e-90
Identity = 164/185 (88.65%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVSSNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLEGK 60
           MFRT ET+NK+QKVSSNA+LWHLRLGHINLNRIERLVKSG+LNQLEDNSLPPC+SCLEGK
Sbjct: 425 MFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGK 484

Query: 61  MTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNKSD 120
           MTKRSFT K LRAK PL+LVHSDLCGPMNVK RGGYE+FISFIDD+SRYGHVYL+ +KS+
Sbjct: 485 MTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSE 544

Query: 121 SFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQNGV 180
           SFEKFKEYKAEVENE+GKTIKTLRSDRGGEYMD +FQDYLIE GIQSQLSAPSTPQQNGV
Sbjct: 545 SFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGV 604

Query: 181 SERRN 186
           SERRN
Sbjct: 605 SERRN 609

[Close]

BLAST of Cmc07g0193941 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 145/187 (77.54%), Postives = 168/187 (89.84%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVS--SNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLE 60
           MFRTA T+NKRQ++S  +N +LWHLRLGHINL+RI RLVK+GLLN+L+D SLPPC+SCLE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNK 120
           GKMTKR FT K  RAK PL+L+HSDLCGPMNVK RGG+E+FISFIDDYSRYG++YL+++K
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 448

Query: 121 SDSFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQN 180
           S++ EKFKEYK EVEN L K IK LRSDRGGEYMDL+FQDY+IEHGIQSQLSAP TPQQN
Sbjct: 449 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 508

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 509 GVSERRN 515

[Close]

BLAST of Cmc07g0193941 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 146/187 (78.07%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVSS--NAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLE 60
           MFRTA T+NKRQ++SS  N +LWHLRLGHINL+RI RLVK+GLLN+LED+SLPPC+SCLE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  GKMTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNK 120
           GKMTKR FT K  RAK PL+L+HSDLCGPMNVK  GG+E+FISFIDDYS YG++YLI++K
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHK 420

Query: 121 SDSFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQN 180
           S++ EKFKEYK EVEN L K IK LRSDRGGEYMDL+FQDY+IEHGIQSQLSAP TPQQN
Sbjct: 421 SEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 480

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 481 GVSERRN 487

[Close]

BLAST of Cmc07g0193941 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.3e-78
Identity = 144/187 (77.01%), Postives = 168/187 (89.84%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVS--SNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLE 60
           MFRTA T+NKRQ++S  +N +LWHLRL HINL+RI RLVK+GLLN+L+D+SLPPC+SCLE
Sbjct: 299 MFRTANTQNKRQRISPNNNTYLWHLRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLE 358

Query: 61  GKMTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNK 120
           GKMTKR FT KD RAK PL+L+HSDLCGPMNVK RGG+E+FISFIDDYSRYG++YL+++K
Sbjct: 359 GKMTKRPFTGKDYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK 418

Query: 121 SDSFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEHGIQSQLSAPSTPQQN 180
            ++ EKFKEYK EVEN L K IK LRSDRGGEYMDL+FQDY+IEHGIQSQLSAP TPQQN
Sbjct: 419 YEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQN 478

Query: 181 GVSERRN 186
           GVSERRN
Sbjct: 479 GVSERRN 485

[Close]

BLAST of Cmc07g0193941 vs. ExPASy TrEMBL
Match: A0A5A7U4V3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G001450 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 146/176 (82.95%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFRTAETRNKRQKVSSNAFLWHLRLGHINLNRIERLVKSGLLNQLEDNSLPPCDSCLEGK 60
           +FR A+T+NKRQKVS NAFLWHLRLGHINLN I RLVKSGLL+QLEDNSLPPCDSCLEGK
Sbjct: 110 IFRKAKTQNKRQKVSFNAFLWHLRLGHINLNGIGRLVKSGLLSQLEDNSLPPCDSCLEGK 169

Query: 61  MTKRSFTRKDLRAKTPLKLVHSDLCGPMNVKVRGGYEHFISFIDDYSRYGHVYLIQNKSD 120
           MT+RSFTRK LRAKTPL+LVHSDLCGPMNVK RGGY++FISFID+YSRYGHVYLIQNK D
Sbjct: 170 MTQRSFTRKGLRAKTPLELVHSDLCGPMNVKARGGYKYFISFIDNYSRYGHVYLIQNKFD 229

Query: 121 SFEKFKEYKAEVENELGKTIKTLRSDRGGEYMDLQFQDYLIEH--GIQSQLSAPST 175
           SFEKFKEYKAEVENE GKTIKT RSDRGGEYMDL+FQDYLIEH   ++++   PS+
Sbjct: 230 SFEKFKEYKAEVENESGKTIKTFRSDRGGEYMDLRFQDYLIEHKAEVENESDRPSS 285

The following BLAST results are available for this feature:

BLAST of Cmc07g0193941 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	9.1e-90	88.65	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	2.7e-78	77.54	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0060534.1	2.7e-78	78.07	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	4.7e-78	77.01	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0050872.1	2.3e-77	82.95	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0193941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.8e-36	42.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-23	37.02	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.0e-19	33.73	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.4e-18	31.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0C2J7	1.0e-06	23.78	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc07g0193941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	4.4e-90	88.65	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	1.3e-78	77.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BNE1	1.3e-78	78.07	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	2.3e-78	77.01	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]
A0A5A7U4V3	1.1e-77	82.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G0014...	[more]

BLAST of Cmc07g0193941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 75..175 e-value: 1.4E-10 score: 41.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 72..185 score: 19.689228
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 68..185 e-value: 7.1E-25 score: 89.4
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 12..61 e-value: 3.0E-13 score: 49.4
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 65..175
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 65..175
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 71..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0193941.1	Cmc07g0193941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding