Cmc07g0190691 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0190691
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr07: 9774578 .. 9775039 (-)
RNA-Seq Expression	Cmc07g0190691
Synteny	Cmc07g0190691

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGGTGAACAGGGTGTTTAAGGATTTCTTAGACACGTTCGTCATAGTTTTCATTGACAACATTTTGATTTACTCCAAGACTGAGGTTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTGTATGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTTTGTTGACCAAGCAAAGATTGAAGCGTTTACCAATTGTCCTCGACCGTCTACAGTTAGTGAGATTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAAACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAGCTGGCGAGAGTAACTTCTAG

mRNA sequence

ATGTCGTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGGTGAACAGGGTGTTTAAGGATTTCTTAGACACGTTCGTCATAGTTTTCATTGACAACATTTTGATTTACTCCAAGACTGAGGTTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTGTATGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTTTGTTGACCAAGCAAAGATTGAAGCGTTTACCAATTGTCCTCGACCGTCTACAGTTAGTGAGATTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAAACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAGCTGGCGAGAGTAACTTCTAG

Coding sequence (CDS)

ATGTCGTTTGGTTTGACTAATGCTCCTGCGGTATTCATGGACTTGGTGAACAGGGTGTTTAAGGATTTCTTAGACACGTTCGTCATAGTTTTCATTGACAACATTTTGATTTACTCCAAGACTGAGGTTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTGTATGTCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGAAGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTTTGTTGACCAAGCAAAGATTGAAGCGTTTACCAATTGTCCTCGACCGTCTACAGTTAGTGAGATTCGTAGTTTCCTGGGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAAACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAGCTGGCGAGAGTAACTTCTAG

Protein sequence

MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYRRFVENFSRIASPLTQLTRKGTPFVWSPAGESNF

Homology

[Close]

BLAST of Cmc07g0190691 vs. NCBI nr
Match: TYK16008.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 143/153 (93.46%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFM LVNRVFKDFLDTF IVFID+ILIYSKTEVEH+EHLHQVLETLRANK
Sbjct: 82  MSFGLTNAPAVFMGLVNRVFKDFLDTFAIVFIDDILIYSKTEVEHDEHLHQVLETLRANK 141

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LYVKFSK EFWLKKVTFLGHVV S+GVFVD AKIEAFTN PRPSTV EIRSFLGLAGYYR
Sbjct: 142 LYVKFSKYEFWLKKVTFLGHVVFSKGVFVDPAKIEAFTNWPRPSTVREIRSFLGLAGYYR 201

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF
Sbjct: 202 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 234

[Close]

BLAST of Cmc07g0190691 vs. NCBI nr
Match: KAA0064153.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 143/153 (93.46%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFM LVNRVFKDFLDTF IVFID+ILIYSKTEVEH+EHLHQVLETLRANK
Sbjct: 82  MSFGLTNAPAVFMGLVNRVFKDFLDTFAIVFIDDILIYSKTEVEHDEHLHQVLETLRANK 141

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LYVKFSK EFWLKKVTFLGHVV S+GVFVD AKIEAFTN PRPSTV EIRSFLGLAGYYR
Sbjct: 142 LYVKFSKYEFWLKKVTFLGHVVFSKGVFVDPAKIEAFTNWPRPSTVREIRSFLGLAGYYR 201

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF
Sbjct: 202 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 234

[Close]

BLAST of Cmc07g0190691 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDL+NRVFKDFLD+FVIVFID+ILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LY KFSKCEFWL+KVTFLGHVVSSEGV VD AKIEA TN PRPSTVSEIRSFLGLAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVE+FSRIASPLTQLTRKGTPFVWSPA ES+F
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSF 673

[Close]

BLAST of Cmc07g0190691 vs. NCBI nr
Match: KAA0039213.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDL+NRVFKDFLD+FVIVFID+ILIYSKTE EH+EHLHQVLETLRANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHKEHLHQVLETLRANK 310

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LYVKFSKCEFWL+KVTFLGHVVSSEGV VD AKIEA TN PRPSTVSEIRSFLGLAGYYR
Sbjct: 311 LYVKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVE+FSRIASPLTQLTRKGTPFVWSPA ES+F
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSF 403

[Close]

BLAST of Cmc07g0190691 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDL+NRVFKDFLD+FVIVFID+ILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LY KFSKCEFWL+KVTFLGHVVSSEGV VD AKIEA TN PRPSTVSEIRSFLGLAGYYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVE+FSRIASPLTQLTRKGTPFVWSPA ES+F
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSF 837

[Close]

BLAST of Cmc07g0190691 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-25
Identity = 57/139 (41.01%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           M FGL NAPA F   +N + +  L+   +V++D+I+++S +  EH + L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           L ++  KCEF  ++ TFLGHV++ +G+  +  KIEA    P P+   EI++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVENFSRIASPLTQLTRK 140
           +F+ NF+ IA P+T+  +K
Sbjct: 454 KFIPNFADIAKPMTKCLKK 472

[Close]

BLAST of Cmc07g0190691 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-25
Identity = 55/141 (39.01%), Postives = 86/141 (60.99%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           M FGL NAPA F   +N + +  L+   +V++D+I+I+S +  EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           L ++  KCEF  K+  FLGH+V+ +G+  +  K++A  + P P+   EIR+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVENFSRIASPLTQLTRKGT 142
           +F+ N++ IA P+T   +K T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRT 473

[Close]

BLAST of Cmc07g0190691 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.4e-24
Identity = 49/138 (35.51%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           + FGL NAPA+F  +++ + ++ +     V+ID+I+++S+    H ++L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           L V   K  F   +V FLG++V+++G+  D  K+ A +  P P++V E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVENFSRIASPLTQLTR 139
           +F+++++++A PLT LTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of Cmc07g0190691 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.1e-22
Identity = 50/147 (34.01%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           M +G++ APA F   +N +  +  ++ V+ ++DNILI+SK+E EH +H+  VL+ L+   
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           L +  +KCEF   +V F+G+ +S +G    Q  I+      +P    E+R FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSP 148
           +F+   S++  PL  L +K   + W+P
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTP 680

[Close]

BLAST of Cmc07g0190691 vs. ExPASy Swiss-Prot
Match: P0CT42 (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.1e-22
Identity = 50/147 (34.01%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           M +G++ APA F   +N +  +  ++ V+ ++DNILI+SK+E EH +H+  VL+ L+   
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           L +  +KCEF   +V F+G+ +S +G    Q  I+      +P    E+R FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSP 148
           +F+   S++  PL  L +K   + W+P
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTP 680

[Close]

BLAST of Cmc07g0190691 vs. ExPASy TrEMBL
Match: A0A5A7V7Q5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00770 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.2e-74
Identity = 143/153 (93.46%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFM LVNRVFKDFLDTF IVFID+ILIYSKTEVEH+EHLHQVLETLRANK
Sbjct: 82  MSFGLTNAPAVFMGLVNRVFKDFLDTFAIVFIDDILIYSKTEVEHDEHLHQVLETLRANK 141

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LYVKFSK EFWLKKVTFLGHVV S+GVFVD AKIEAFTN PRPSTV EIRSFLGLAGYYR
Sbjct: 142 LYVKFSKYEFWLKKVTFLGHVVFSKGVFVDPAKIEAFTNWPRPSTVREIRSFLGLAGYYR 201

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF
Sbjct: 202 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 234

[Close]

BLAST of Cmc07g0190691 vs. ExPASy TrEMBL
Match: A0A5D3CXM2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3068G00030 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.2e-74
Identity = 143/153 (93.46%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFM LVNRVFKDFLDTF IVFID+ILIYSKTEVEH+EHLHQVLETLRANK
Sbjct: 82  MSFGLTNAPAVFMGLVNRVFKDFLDTFAIVFIDDILIYSKTEVEHDEHLHQVLETLRANK 141

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LYVKFSK EFWLKKVTFLGHVV S+GVFVD AKIEAFTN PRPSTV EIRSFLGLAGYYR
Sbjct: 142 LYVKFSKYEFWLKKVTFLGHVVFSKGVFVDPAKIEAFTNWPRPSTVREIRSFLGLAGYYR 201

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF
Sbjct: 202 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 234

[Close]

BLAST of Cmc07g0190691 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDL+NRVFKDFLD+FVIVFID+ILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LY KFSKCEFWL+KVTFLGHVVSSEGV VD AKIEA TN PRPSTVSEIRSFLGLAGYYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVE+FSRIASPLTQLTRKGTPFVWSPA ES+F
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSF 837

[Close]

BLAST of Cmc07g0190691 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDL+NRVFKDFLD+FVIVFID+ILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LY KFSKCEFWL+KVTFLGHVVSSEGV VD AKIEA TN PRPSTVSEIRSFLGLAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVE+FSRIASPLTQLTRKGTPFVWSPA ES+F
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSF 673

[Close]

BLAST of Cmc07g0190691 vs. ExPASy TrEMBL
Match: A0A5A7UN68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002110 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.5e-72
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLVNRVFKDFLDTFVIVFIDNILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDL+NRVFKDFLD+FVIVFID+ILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 600 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYVKFSKCEFWLKKVTFLGHVVSSEGVFVDQAKIEAFTNCPRPSTVSEIRSFLGLAGYYR 120
           LYVKFSKCEFWLKKVTFLGHVVSSEGV +D AKIEA TN PRPSTVSEI+SFLGLAGYYR
Sbjct: 660 LYVKFSKCEFWLKKVTFLGHVVSSEGVSMDPAKIEAVTNWPRPSTVSEIQSFLGLAGYYR 719

Query: 121 RFVENFSRIASPLTQLTRKGTPFVWSPAGESNF 154
           RFVE+FSRIASPLTQLTRKGTPFVWSPA ES+F
Sbjct: 720 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSF 752

[Close]

BLAST of Cmc07g0190691 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-19
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 48  HLHQVLETLRANKLYVKFSKCEFWLKKVTFLG--HVVSSEGVFVDQAKIEAFTNCPRPST 107
           HL  VL+    ++ Y    KC F   ++ +LG  H++S EGV  D AK+EA    P P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEIRSFLGLAGYYRRFVENFSRIASPLTQLTRKGT 142
            +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS 98

The following BLAST results are available for this feature:

BLAST of Cmc07g0190691 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16008.1	1.3e-73	93.46	pol protein [Cucumis melo var. makuwa]	[more]
KAA0064153.1	1.3e-73	93.46	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066951.1	3.2e-72	91.50	pol protein [Cucumis melo var. makuwa]	[more]
KAA0039213.1	3.2e-72	91.50	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	3.2e-72	91.50	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc07g0190691 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.0e-25	41.01	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	3.0e-25	39.01	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	7.4e-24	35.51	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q9UR07	9.1e-22	34.01	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT42	9.1e-22	34.01	Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc07g0190691 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7Q5	6.2e-74	93.46	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00770 PE...	[more]
A0A5D3CXM2	6.2e-74	93.46	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3068G00030 P...	[more]
A0A5A7V4E4	1.5e-72	91.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7VMR4	1.5e-72	91.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UN68	1.5e-72	91.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]

BLAST of Cmc07g0190691 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.5e-19	43.75	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 9.7E-15 score: 54.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 91..153 e-value: 4.3E-21 score: 76.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 7.7E-33 score: 115.2
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..149
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..149
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 3.57309E-38 score: 126.171
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0190691.1	Cmc07g0190691.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding