Cmc07g0186631 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0186631
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II protein D1
Location	CMiso1.1chr07: 4558537 .. 4558818 (+)
RNA-Seq Expression	Cmc07g0186631
Synteny	Cmc07g0186631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAGAGTGGAAACTGAGTTTCCGTCTGGGTAAGCGTCCTTGGATTGTTGTTACATATTCAGCTCCTGTTGCAGCTGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACCCATTCCATAGGTGTAGCTGGTGTATTCGGGGGATCTCTATTCAGTCCTATGCATGGTTCCTTGGTCACTTCTAG

mRNA sequence

ATGGGTCGAGAGTGGAAACTGAGTTTCCGTCTGGGTAAGCGTCCTTGGATTGTTGTTACATATTCAGCTCCTGTTGCAGCTGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACCCATTCCATAGGTGTAGCTGGTGTATTCGGGGGATCTCTATTCAGTCCTATGCATGGTTCCTTGGTCACTTCTAG

Coding sequence (CDS)

ATGGGTCGAGAGTGGAAACTGAGTTTCCGTCTGGGTAAGCGTCCTTGGATTGTTGTTACATATTCAGCTCCTGTTGCAGCTGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACCCATTCCATAGGTGTAGCTGGTGTATTCGGGGGATCTCTATTCAGTCCTATGCATGGTTCCTTGGTCACTTCTAG

Protein sequence

MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHRCSWCIRGISIQSYAWFLGHF

Homology

[Close]

BLAST of Cmc07g0186631 vs. NCBI nr
Match: VVW90934.1 (unnamed protein product [Nymphaea colorata])

HSP 1 Score: 154.5 bits (389), Expect = 4.6e-34
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 91  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 150

Query: 61  QAEHNILIHPFHR--CSWCIRGISIQSYAWFLGH 93
           QAEHNIL+HPFH    +   R +SIQ YAWFLG+
Sbjct: 151 QAEHNILMHPFHMLGVAGVFRRLSIQCYAWFLGN 184

[Close]

BLAST of Cmc07g0186631 vs. NCBI nr
Match: OMP12461.1 (Photosynthetic reaction centre, L/M [Corchorus olitorius])

HSP 1 Score: 144.4 bits (363), Expect = 4.8e-31
Identity = 71/92 (77.17%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 93  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 152

Query: 61  QAEHNILIHPFHR--CSWCIRGISIQSYAWFL 91
           QAEHNIL+HPFH    +    G     YAWFL
Sbjct: 153 QAEHNILMHPFHMLGVAGVFGGSLFSCYAWFL 184

[Close]

BLAST of Cmc07g0186631 vs. NCBI nr
Match: RZC89854.1 (hypothetical protein C5167_035851 [Papaver somniferum])

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-30
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWIVVTYSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIVVTYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

[Close]

BLAST of Cmc07g0186631 vs. NCBI nr
Match: XP_037491792.1 (LOW QUALITY PROTEIN: photosystem II protein D1-like [Jatropha curcas])

HSP 1 Score: 141.0 bits (354), Expect = 5.3e-30
Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFHRCSWC-IRGISIQSYAWFLGH 93
           QAEHNIL+HPFH      + G S+ S   FLG+
Sbjct: 187 QAEHNILMHPFHMLGVAGVFGGSLFSAMHFLGN 219

[Close]

BLAST of Cmc07g0186631 vs. NCBI nr
Match: PHT29345.1 (Photosystem II protein D1 [Capsicum baccatum])

HSP 1 Score: 140.2 bits (352), Expect = 9.0e-30
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWIVV YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIVVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

[Close]

BLAST of Cmc07g0186631 vs. ExPASy Swiss-Prot
Match: P13910 (Photosystem II protein D1 OS=Vicia faba OX=3906 GN=psbA PE=3 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-32
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWIVV YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIVVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

[Close]

BLAST of Cmc07g0186631 vs. ExPASy Swiss-Prot
Match: Q3V554 (Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-32
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

[Close]

BLAST of Cmc07g0186631 vs. ExPASy Swiss-Prot
Match: A4QJ96 (Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-32
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

[Close]

BLAST of Cmc07g0186631 vs. ExPASy Swiss-Prot
Match: A4QJI0 (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-32
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

[Close]

BLAST of Cmc07g0186631 vs. ExPASy Swiss-Prot
Match: A1E9Y8 (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-32
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

[Close]

BLAST of Cmc07g0186631 vs. ExPASy TrEMBL
Match: A0A5K1I0G6 (Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30801 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 91  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 150

Query: 61  QAEHNILIHPFHR--CSWCIRGISIQSYAWFLGH 93
           QAEHNIL+HPFH    +   R +SIQ YAWFLG+
Sbjct: 151 QAEHNILMHPFHMLGVAGVFRRLSIQCYAWFLGN 184

[Close]

BLAST of Cmc07g0186631 vs. ExPASy TrEMBL
Match: A0A1R3KZE5 (Photosynthetic reaction centre, L/M OS=Corchorus olitorius OX=93759 GN=COLO4_03170 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 71/92 (77.17%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 93  MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 152

Query: 61  QAEHNILIHPFHR--CSWCIRGISIQSYAWFL 91
           QAEHNIL+HPFH    +    G     YAWFL
Sbjct: 153 QAEHNILMHPFHMLGVAGVFGGSLFSCYAWFL 184

[Close]

BLAST of Cmc07g0186631 vs. ExPASy TrEMBL
Match: A0A3B6IS79 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.4e-30
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
          MGREW+LSFRLG+RPWIVV YSAPVAAAT+VFLIY IGQGSFSDGMPLGISGTFN+MIVF
Sbjct: 1  MGREWELSFRLGRRPWIVVAYSAPVAAATLVFLIYPIGQGSFSDGMPLGISGTFNYMIVF 60

Query: 61 QAEHNILIHPFH 73
          QAEHNIL+HPFH
Sbjct: 61 QAEHNILMHPFH 72

[Close]

BLAST of Cmc07g0186631 vs. ExPASy TrEMBL
Match: A0A2K2CNR4 (Photosystem II protein D1 OS=Brachypodium distachyon OX=15368 GN=BRADI_4g19720v3 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-30
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAATVVFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATVVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

[Close]

BLAST of Cmc07g0186631 vs. ExPASy TrEMBL
Match: F1KC07 (Photosystem II protein D1 OS=Kirengeshoma palmata OX=39326 GN=psbA PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-30
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWIVV YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIVVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

[Close]

BLAST of Cmc07g0186631 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 138.7 bits (348), Expect = 2.5e-33
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 1   MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVF 60
           MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVF
Sbjct: 127 MGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVF 186

Query: 61  QAEHNILIHPFH 73
           QAEHNIL+HPFH
Sbjct: 187 QAEHNILMHPFH 198

The following BLAST results are available for this feature:

BLAST of Cmc07g0186631 vs. NCBI nr


Match Name	E-value	Identity	Description
VVW90934.1	4.6e-34	79.79	unnamed protein product [Nymphaea colorata]	[more]
OMP12461.1	4.8e-31	77.17	Photosynthetic reaction centre, L/M [Corchorus olitorius]	[more]
RZC89854.1	2.4e-30	93.06	hypothetical protein C5167_035851 [Papaver somniferum]	[more]
XP_037491792.1	5.3e-30	76.34	LOW QUALITY PROTEIN: photosystem II protein D1-like [Jatropha curcas]	[more]
PHT29345.1	9.0e-30	91.67	Photosystem II protein D1 [Capsicum baccatum]	[more]

BLAST of Cmc07g0186631 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P13910	1.2e-32	91.67	Photosystem II protein D1 OS=Vicia faba OX=3906 GN=psbA PE=3 SV=2	[more]
Q3V554	3.4e-32	90.28	Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1	[more]
A4QJ96	3.4e-32	90.28	Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1	[more]
A4QJI0	3.4e-32	90.28	Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1	[more]
A1E9Y8	3.4e-32	90.28	Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1	[more]

BLAST of Cmc07g0186631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K1I0G6	2.2e-34	79.79	Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30801 PE=3 SV...	[more]
A0A1R3KZE5	2.3e-31	77.17	Photosynthetic reaction centre, L/M OS=Corchorus olitorius OX=93759 GN=COLO4_031...	[more]
A0A3B6IS79	3.4e-30	90.28	Uncharacterized protein OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]
A0A2K2CNR4	4.4e-30	91.67	Photosystem II protein D1 OS=Brachypodium distachyon OX=15368 GN=BRADI_4g19720v3...	[more]
F1KC07	4.4e-30	91.67	Photosystem II protein D1 OS=Kirengeshoma palmata OX=39326 GN=psbA PE=3 SV=1	[more]

BLAST of Cmc07g0186631 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	2.5e-33	90.28	photosystem II reaction center protein A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 1..73 e-value: 7.3E-26 score: 90.9
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 1..72
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 16..89 e-value: 1.7E-17 score: 65.6
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..75
None	No IPR available	PANTHER	PTHR33149:SF30	PHOTOSYNTHETIC REACTION CENTRE, L/M-RELATED	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0186631.1	Cmc07g0186631.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0009635	response to herbicide
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function	GO:0010242	oxygen evolving activity