Cmc07g0183971 (gene) Melon (Charmono) v1.1

Overview
NameCmc07g0183971
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionprotein ROOT INITIATION DEFECTIVE 3
LocationCMiso1.1chr07: 2220747 .. 2224491 (+)
RNA-Seq ExpressionCmc07g0183971
SyntenyCmc07g0183971
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATCATCATAAAACTTCGGCTCGGCCCAGTCCATTATAAATTTATTTTTGGCGAAATTGGATTGTATTGATTTTGAAGTTTGTTCGTTCGACAATTCCCCTCACCCTATTCAACTCCTTCCCGCCGCCGTCTCCTTCGGCGCTAAACATCGTTTTGGTTGCCGCGCTGTTTTTCATCCACCGCACCGCCATAAATTATTCCAAACCAAATTGAAAACTGAAACCCTCTTCTCAAGCTCTCAACTCAGAATGGTGCTACTGGTTGCTTCGTCGTCTATTGATTCAGGGATTGGTTGCTGGGACCTTCATACCGGCGCAGAACAACTGCGTTACAAGTCTTGTGCTTCTCCGCCACATGGTCTTGTTTGTGTTGGTGAAAAGTTTCTCGCGTGCTCTCAGCTTCGCGATGCTGCAGCTACTGCTGGCTCCGTTCTCTACTGGTCTTGGTGTAAGGTACTTGTTATTGTAACGAATTTCAACTCTCTGTTCCTCAATACTCTGCTTAATTAATTTTTCTTCCTACAGCCTCAAGTTGAAGTTAAGAGTTTTCCGGCTGAACCAATAATGGCCTTGGCTTCCAACAATGAGGGTACTTATATTGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTAAATTTTGATTTAATAAATTTTGCTCTGCCATTGAACTCTAAAATTATCGTCTTCTTATTCTATTAATTGGCACATTCTTGGCTGTAGTATAAGATGAATTGCTCGTTGTTGTAGGTTTTAAGTGGTAGACTGCTTAAAAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTTGTTTTCTCTGAAGATGACTCCCTGTTAATTTCTGGTTCTGAAGACGGCTGCATTAGAGTTTGGTCCCTTATAACGTATAAAATTTCATCATTTGGCCGTGTGTTTGTGTGTTTAGGTTTTTATGTGATTTGTAGAAATTCTTATTACAAACATGTTGATTGCAGGGTTTTTGATGATGGATGGCAAAGGGAAGCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTGCCTGTTACTGACGTTGTTGTTGGCTATGGAGGATTCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTTTGGCACTCCATTGAATTTAACACCTATGTTGATAATCTAATTTTCTGATGATGTGGCCATGTAGATTGGTTAGTTAATTAGTTTTACAACCACTTTGGAAGTCCAATTGCATTGACTTGGTATATTGCCCTTTTTTGCAATTACAACAGCTTGACGTTTAAGGTTTTCTTAATGCTTACATCCTCATCTAGGATTTTAAAAAACATATTATCTAGACTAAATTTTGTATTGTAACCAAAAATGACAATGTATGGGAGGATGAGTTATCGAGTGCAGAGAGGTGGATATAATTATCCAACTACGATTTATATCAATATGCATTATGTTCTAGGATTTTCACATTTTTAATAGTGATGTGGATATACTGTATATGAAATGTGTTTGTTTACGATTTGTCACCACTGTGTAATGACTACTTTCCTATCCTAACTTCACCCATATCAAATTTTCTTTGGTGATGCATATGTTGTATGCTAACTTGGCTTTTGTAGGTGTGGAGCTTATCGAAGGGGAAGTTATTAAGAAATATCATATTTCCTTCAATCATTGATGCCATTGCTTTGGATCCTGGTGAGCATGTCTTTTATGGTGGTGGCAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCTAAATGCCCATCCAGCAGTGACTACGGATTGCATATACTTGGGTCATTGTCAAATCAAAGGTCTGTATTAATTATCTCTATCATTTTATTTTATCATGGAGGCTGTTTTTCTTTCAACATTAATATATCTACAGTTAAACAAGATTAAGTTTTCAATTTCCTATAATTTTGTTTGTCCTTTCTGGTTTCAAGAATATTTTCATTGTTCCATGCAATATATATTAGATTGTCTAATGATATAATTATGCAATGAAATGTTGAGGAATTTCAAGTTGCTATTAGTTTGGTGCACATGCACTAGGGTTATTTGTAATGGTGTCTTGATTTCTTAAAAACTAGGAATTAGTATTCTACTTCCAAGTTGATCATTGTTGGGTCTCGGTTGCTAAACAGCCACTCTCTTTATGGTTTCTTTAAAGAAACTGGACGTGGTTTTTTTAATATGTATATAGGTTTTTAATGCAGCATATATTATCTTTTTGGATTTGCTATATTGTCCAACTTATTGTCCTTTTGTATTCTTACTAGCAAGTCAGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTGTTGATCTCTGGATCTGAGGATGGAGCAATAAGAGTTTGGGATACACGAACCAATAATGTTATTCGTGTTTTCGGACATTCAAAAGGTAACAAGCCATTTAAATTTTATTACTTGAATAAGGTTAGTTTCTATGAAATTGTATTTTCTTTTCATTTATTGACCGTCTGACCCAGTATTTGAATAAATATTATTTCTTGCATAAATACCTCTACCAAGTTGTTTTTTATTTTCAAATTTAGCCTTAGCTGAGGCTTAAGGTACATCTTTCATTGTTTTGTTTCCACTGCTTTGCAATTTTAATTGTTAGAGATTGGAGGATGTTACATTCAAATTAGAAAATATATATATGTTTTGAAGCTTGATACTCTTTTTTATCTCTTTCTTATGAACCTTATTTGAGCATTTTAAGTTCATTCATTTATATATAATTTTTTTTAAAATGTACATTCATTTATTTAATTTTCTTTCCCATAGCTTTTGCTTAATTCATGACCAGCATTTTTATTATATGATTTCAATGAAAATACACCAATGCTACATACTACCGTGCAGGTCCTGTAAACAATATACTTCTTGTTCAACAACAGCCCCTCCCTAAATCACAGTCAACTTCCCAAGGTTCTTTGAGAAAGCACCGGCCAATCTTACCACCTGCCCTCGCTAAATTTGAGAACTCTAAGGACGAGGATGAATACACTGGTGTTATCATTGATCCATCAGGTCCTCCCAAGGAATCTATGGAGTTTTCTTTCCTTAGTTCTCACGTTATGGATAATCAAATCACAGAACTTCAGGTGCTTTATTTTTTTTTCTATACCCCTTCCCTGTGGTCCTAGAATTCCTTTTTTCTTTCTTGCTTAATTATGTTGTAGCTTTTCTTGTTCTGGGATAGACACACAATATTTTGATATCCCATAATCCTCTATACGCTTAAAGCCTGTTCTAACATGTGGTTTTCTGTATTTCAGCAACAGGGTTCTGCTGCCACAGAAATGGAGTTGGAAAGACTTAAGCATGATTATGGAAAATCCAAGCAAATGCTACAACACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTTAATGAGCTTCTGGACGGCAATCAAACTAAAAATATAGAAGGCAATTCCACTTGAGCGTTGCTGTCACTTCTCTTATGTATTCTATTTGTTTTATCTATCTCCAGTTCTAGAAATTGTATAATCACGTCGAAACAAATCTGATGGAATTGTTAGGAAGTCATCGTTGATTAATTTAAATTCCAAAATCCCATTTCTGGGATAAGAGATCTGTACATGGCGAATACACTTCCTTAGTTTAGAAGATTATTTTTTGTTAATGTGGGGATTCTTTATTCTTCTTGTATGTTCTAGACTTGTTATGATTTTTGGTGCAATCTCTTTTT

mRNA sequence

TCCATCATCATAAAACTTCGGCTCGGCCCAGTCCATTATAAATTTATTTTTGGCGAAATTGGATTGTATTGATTTTGAAGTTTGTTCGTTCGACAATTCCCCTCACCCTATTCAACTCCTTCCCGCCGCCGTCTCCTTCGGCGCTAAACATCGTTTTGGTTGCCGCGCTGTTTTTCATCCACCGCACCGCCATAAATTATTCCAAACCAAATTGAAAACTGAAACCCTCTTCTCAAGCTCTCAACTCAGAATGGTGCTACTGGTTGCTTCGTCGTCTATTGATTCAGGGATTGGTTGCTGGGACCTTCATACCGGCGCAGAACAACTGCGTTACAAGTCTTGTGCTTCTCCGCCACATGGTCTTGTTTGTGTTGGTGAAAAGTTTCTCGCGTGCTCTCAGCTTCGCGATGCTGCAGCTACTGCTGGCTCCGTTCTCTACTGGTCTTGGTGTAAGCCTCAAGTTGAAGTTAAGAGTTTTCCGGCTGAACCAATAATGGCCTTGGCTTCCAACAATGAGGGTACTTATATTGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTTTTAAGTGGTAGACTGCTTAAAAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTTGTTTTCTCTGAAGATGACTCCCTGTTAATTTCTGGTTCTGAAGACGGCTGCATTAGAGTTTGGTCCCTTATAACGGTTTTTGATGATGGATGGCAAAGGGAAGCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTGCCTGTTACTGACGTTGTTGTTGGCTATGGAGGATTCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCGAAGGGGAAGTTATTAAGAAATATCATATTTCCTTCAATCATTGATGCCATTGCTTTGGATCCTGGTGAGCATGTCTTTTATGGTGGTGGCAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCTAAATGCCCATCCAGCAGTGACTACGGATTGCATATACTTGGGTCATTGTCAAATCAAAGCAAGTCAGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTGTTGATCTCTGGATCTGAGGATGGAGCAATAAGAGTTTGGGATACACGAACCAATAATGTTATTCGTGTTTTCGGACATTCAAAAGGTCCTGTAAACAATATACTTCTTGTTCAACAACAGCCCCTCCCTAAATCACAGTCAACTTCCCAAGGTTCTTTGAGAAAGCACCGGCCAATCTTACCACCTGCCCTCGCTAAATTTGAGAACTCTAAGGACGAGGATGAATACACTGGTGTTATCATTGATCCATCAGGTCCTCCCAAGGAATCTATGGAGTTTTCTTTCCTTAGTTCTCACGTTATGGATAATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACAGAAATGGAGTTGGAAAGACTTAAGCATGATTATGGAAAATCCAAGCAAATGCTACAACACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTTAATGAGCTTCTGGACGGCAATCAAACTAAAAATATAGAAGGCAATTCCACTTGAGCGTTGCTGTCACTTCTCTTATGTATTCTATTTGTTTTATCTATCTCCAGTTCTAGAAATTGTATAATCACGTCGAAACAAATCTGATGGAATTGTTAGGAAGTCATCGTTGATTAATTTAAATTCCAAAATCCCATTTCTGGGATAAGAGATCTGTACATGGCGAATACACTTCCTTAGTTTAGAAGATTATTTTTTGTTAATGTGGGGATTCTTTATTCTTCTTGTATGTTCTAGACTTGTTATGATTTTTGGTGCAATCTCTTTTT

Coding sequence (CDS)

ATGGTGCTACTGGTTGCTTCGTCGTCTATTGATTCAGGGATTGGTTGCTGGGACCTTCATACCGGCGCAGAACAACTGCGTTACAAGTCTTGTGCTTCTCCGCCACATGGTCTTGTTTGTGTTGGTGAAAAGTTTCTCGCGTGCTCTCAGCTTCGCGATGCTGCAGCTACTGCTGGCTCCGTTCTCTACTGGTCTTGGTGTAAGCCTCAAGTTGAAGTTAAGAGTTTTCCGGCTGAACCAATAATGGCCTTGGCTTCCAACAATGAGGGTACTTATATTGTTGGTGGTGGTTTCTCTGGAGATATATACTTGTGGGAGGTTTTAAGTGGTAGACTGCTTAAAAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTTGTTTTCTCTGAAGATGACTCCCTGTTAATTTCTGGTTCTGAAGACGGCTGCATTAGAGTTTGGTCCCTTATAACGGTTTTTGATGATGGATGGCAAAGGGAAGCAAAACATTTGTATGAGCATAGTTTCACTGGGCATAATCTGCCTGTTACTGACGTTGTTGTTGGCTATGGAGGATTCAATGCTATTATAATCTCTTCCTCTGTGGATCGTACTTGTAAGGTGTGGAGCTTATCGAAGGGGAAGTTATTAAGAAATATCATATTTCCTTCAATCATTGATGCCATTGCTTTGGATCCTGGTGAGCATGTCTTTTATGGTGGTGGCAGAGATGGGAAGATCTACACTGCTGCGCTTAATGCTAAATGCCCATCCAGCAGTGACTACGGATTGCATATACTTGGGTCATTGTCAAATCAAAGCAAGTCAGTTACTTCCTTGGCATACTGCTCAAGTGGTAATTTGTTGATCTCTGGATCTGAGGATGGAGCAATAAGAGTTTGGGATACACGAACCAATAATGTTATTCGTGTTTTCGGACATTCAAAAGGTCCTGTAAACAATATACTTCTTGTTCAACAACAGCCCCTCCCTAAATCACAGTCAACTTCCCAAGGTTCTTTGAGAAAGCACCGGCCAATCTTACCACCTGCCCTCGCTAAATTTGAGAACTCTAAGGACGAGGATGAATACACTGGTGTTATCATTGATCCATCAGGTCCTCCCAAGGAATCTATGGAGTTTTCTTTCCTTAGTTCTCACGTTATGGATAATCAAATCACAGAACTTCAGCAACAGGGTTCTGCTGCCACAGAAATGGAGTTGGAAAGACTTAAGCATGATTATGGAAAATCCAAGCAAATGCTACAACACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTTAATGAGCTTCTGGACGGCAATCAAACTAAAAATATAGAAGGCAATTCCACTTGA

Protein sequence

MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGSVLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVVVGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFGHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGVIIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRKMYDNLHQFCVNELLDGNQTKNIEGNST
Homology
[Close]
BLAST of Cmc07g0183971 vs. NCBI nr
Match: XP_008452567.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo])

HSP 1 Score: 914.1 bits (2361), Expect = 4.8e-262
Identity = 444/447 (99.33%), Postives = 445/447 (99.55%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD+V
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360
           VIRVF HSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 447

[Close]
BLAST of Cmc07g0183971 vs. NCBI nr
Match: XP_011654116.2 (protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus])

HSP 1 Score: 894.0 bits (2309), Expect = 5.1e-256
Identity = 433/447 (96.87%), Postives = 440/447 (98.43%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVLLVASSSIDSGIGCWDLHTG+EQLRYKSCASPPHGLVCVG KFLACSQLRD AATAGS
Sbjct: 63  MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 122

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 123 VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 182

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCLVFSEDDSLL+SGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD+V
Sbjct: 183 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 242

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 243 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 302

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN
Sbjct: 303 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 362

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360
           VIRVF HSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRP+LPPALAKFENSKDEDEYTGV
Sbjct: 363 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 422

Query: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKES  FSFLSSHVMD+QITELQQQGSAAT MELERLKHDYGKSKQMLQHWRK
Sbjct: 423 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 482

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 483 MYDNLHQFCVNELLDGNQTKNIEGNST 509

[Close]
BLAST of Cmc07g0183971 vs. NCBI nr
Match: KGN55205.1 (hypothetical protein Csa_012375 [Cucumis sativus])

HSP 1 Score: 894.0 bits (2309), Expect = 5.1e-256
Identity = 433/447 (96.87%), Postives = 440/447 (98.43%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVLLVASSSIDSGIGCWDLHTG+EQLRYKSCASPPHGLVCVG KFLACSQLRD AATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCLVFSEDDSLL+SGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD+V
Sbjct: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360
           VIRVF HSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRP+LPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKES  FSFLSSHVMD+QITELQQQGSAAT MELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 447

[Close]
BLAST of Cmc07g0183971 vs. NCBI nr
Match: KAA0064393.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo var. makuwa] >TYK20193.1 protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo var. makuwa])

HSP 1 Score: 859.8 bits (2220), Expect = 1.1e-245
Identity = 418/421 (99.29%), Postives = 419/421 (99.52%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD+V
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360
           VIRVF HSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420

Query: 421 M 422
           M
Sbjct: 421 M 421

[Close]
BLAST of Cmc07g0183971 vs. NCBI nr
Match: XP_038898957.1 (protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida])

HSP 1 Score: 846.3 bits (2185), Expect = 1.2e-241
Identity = 412/446 (92.38%), Postives = 426/446 (95.52%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVL+VASSSIDSGIGCWDLHTGAEQLRYKSCASP HGLVCVGE+FLACSQLRD AATAGS
Sbjct: 1   MVLVVASSSIDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATAGS 60

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSWCKPQVEVKSFPAEPIMALASN+EGTYIVGGG SGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNDEGTYIVGGGLSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCLVFSEDDSLLISGSEDGCIRVW+L+TVFDDGWQREAKHLYEHSFTGHNLPVTD+V
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWALLTVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIID IALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDVIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPS+ DYGLHILGSLSNQSKSVT+LAYCSSGNLLISGSEDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSTGDYGLHILGSLSNQSKSVTALAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360
           VIRVF HSKGPVNNILLV+QQ LPKSQSTSQG LRKHR +LPPALAKFENSKDEDE TGV
Sbjct: 301 VIRVFRHSKGPVNNILLVRQQVLPKSQSTSQGFLRKHRSLLPPALAKFENSKDEDEDTGV 360

Query: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420
           II P+G PKESM F  LSSHVMDNQITELQQQGSAA  MELERLK+D GKS QMLQHWRK
Sbjct: 361 IIGPTGLPKESMGFPALSSHVMDNQITELQQQGSAANGMELERLKYDCGKSMQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNS 447
           MYDNLHQFCVNELLDG+QTKNI+GNS
Sbjct: 421 MYDNLHQFCVNELLDGDQTKNIQGNS 446

[Close]
BLAST of Cmc07g0183971 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 1.9e-144
Identity = 257/436 (58.94%), Postives = 323/436 (74.08%), Query Frame = 0 

Query: 2   VLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGSV 61
           + ++ASSSID GIG WDL TG EQL++K CASP HGL  VGEKFLA SQL  A  T+GS+
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYR 121
            YWSW KPQ EVKS+P EPI ALA+NNEGTY+VGGG SGDIYLWEV +G+LLKKWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVVV 181
           +VTCLVFS DDSLL+SGS+DG IRVWSLI +FDD  +++   LYEH+F  H + VTD+V+
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIY 241
            YGG NA+IISSS DRTCKVWSLS+GKLL+NIIFPS+I+A+ALDPG  VFY G RD KIY
Sbjct: 183 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 242

Query: 242 TAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNV 301
             A+NA    +S+YG  +LGS+S + K++T LAYC+ GNLLISGSEDG + VWD ++   
Sbjct: 243 IGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 302

Query: 302 IRVFGHS----KGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEY 361
           +R   H+    KGPVNNI +V++  +  S  T Q S +    ++PP L K+E    ED  
Sbjct: 303 VRTLIHAKGSRKGPVNNIQIVRKTIVANSNKT-QVSWKSRGALIPPPLEKYERPV-EDTM 362

Query: 362 TGVI-IDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQ 421
            G++ +DP       +  SFLS+ ++D Q+ ELQQQGSAATEME+ERLK +Y +S QM +
Sbjct: 363 DGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERLKLEYKRSLQMNE 422

Query: 422 HWRKMYDNLHQFCVNE 433
            W+K Y+NL Q  + E
Sbjct: 423 QWQKNYENLLQVVMEE 431

[Close]
BLAST of Cmc07g0183971 vs. ExPASy Swiss-Prot
Match: Q9BV38 (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 6.1e-42
Identity = 102/308 (33.12%), Postives = 161/308 (52.27%), Query Frame = 0 

Query: 17  WDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGSVLYWSWCKPQVEVKSF 76
           W+LH+GA  L Y+   + P GL  +  ++L  +QL     +A  +      K Q++ K  
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQLGKNYISAWELQR----KDQLQQKIM 82

Query: 77  PAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLI 136
              P+  L ++  G Y++  G +  I+LWEV +G LL     HY+ V+CL F+ D S  I
Sbjct: 83  CPGPVTCLTASPNGLYVL-AGVAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFI 142

Query: 137 SGSEDGCIRVWSLITVFDDGWQR--EAKHLYEHSFTGHNLPVTDVVVGYGGFNAIIISSS 196
           SG +D  + VWSL +V      R    +H++ H    H LP+TD+  G+GG  A + +SS
Sbjct: 143 SGGKDCLVLVWSLCSVLQADPSRIPAPRHVWSH----HALPITDLHCGFGGPLARVATSS 202

Query: 197 VDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSD 256
           +D+T K+W +S G+LL +++F   I A+ +D  EH  + GG +G I+   L    P   +
Sbjct: 203 LDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIFQVDL-FTWPGQRE 262

Query: 257 YGLHILGSLSNQSK----SVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFGHSKG 316
              H         K     VT L+  + G++L+SGS D  +R+WD ++   IR     KG
Sbjct: 263 RSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTVA-LKG 319

Query: 317 PVNNILLV 319
           PV N  ++
Sbjct: 323 PVTNAAIL 319

[Close]
BLAST of Cmc07g0183971 vs. ExPASy Swiss-Prot
Match: Q3SZD4 (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-41
Identity = 101/312 (32.37%), Postives = 159/312 (50.96%), Query Frame = 0 

Query: 17  WDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGSVLYWSW---CKPQVEV 76
           W+LH+GA  L Y+   + P GL  +  ++L  +QL       G     +W    K Q++ 
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL-------GKNYICAWELQRKDQLQQ 82

Query: 77  KSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDS 136
           K     P+  L ++  G Y++  G S +IYLWEV +G LL     HY+ V+CL F+ D S
Sbjct: 83  KIMCPGPVTCLTTSPNGLYVL-AGISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSS 142

Query: 137 LLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVVVGYGGFNAIIISS 196
             ISG +D  +  WSL +V      R       H ++ H LP+TD+  G+GG  A + ++
Sbjct: 143 HFISGGKDCLVLAWSLCSVLQADPSRTPAP--RHVWSRHTLPITDLHCGFGGPLARVATA 202

Query: 197 SVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAAL-------N 256
           S+D+T K+W +S G+LL +++F   I A+ +D  EH  + GG DG I+   L        
Sbjct: 203 SLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIFQVDLCTWPGQRE 262

Query: 257 AKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFG 316
                  ++G    G        VT L+  + G++L+SGS D  +R+WD ++   +R   
Sbjct: 263 KSFQPEQEHGKVFRG----HRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTV- 319

Query: 317 HSKGPVNNILLV 319
             KGPV N  ++
Sbjct: 323 TLKGPVTNACIM 319

[Close]
BLAST of Cmc07g0183971 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.8e-41
Identity = 101/305 (33.11%), Postives = 160/305 (52.46%), Query Frame = 0 

Query: 17  WDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGSVLYWS-WCKPQVEVKS 76
           W+  TG+  L Y+   +   GL  +G ++L   QL         +  W    + Q++ K 
Sbjct: 23  WEPVTGSVLLTYRGGNTSHRGLAVLGGQYLLGGQL-----GKNYINVWELQRRDQLQQKI 82

Query: 77  FPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLL 136
               P+  L+++  G Y+V  G +  IYLWEV +G LL   ++HY+ VTCL F++D S +
Sbjct: 83  VCPGPVNCLSASPNGLYLV-AGIAESIYLWEVSTGHLLAILNSHYQDVTCLTFTDDSSHI 142

Query: 137 ISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVVVGYGGFNAIIISSSV 196
           ISG++D  + VW L +V      R  +  Y   ++ H+LP+TDV  G GG  A + +SS+
Sbjct: 143 ISGAKDSLVLVWGLYSVLQVETSRGPEPRY--VWSRHSLPITDVQCGIGGPQARVATSSL 202

Query: 197 DRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDY 256
           D+T K+W +  G LL +++F   I ++A DP E+  + GG DG IY   L    P   + 
Sbjct: 203 DQTIKLWDICSGDLLVSVLFDVRITSVAFDPAEYHLFCGGSDGVIYQVDLYT-TPEQRER 262

Query: 257 GLHILGSL--SNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFGHSKGPVN 316
             H    +        VT L+    G++LISGS D  + VWD ++   +R   H +GPV 
Sbjct: 263 PFHPEQEMVFKGHRNQVTCLSVSLDGSMLISGSHDETVCVWDIQSKQSLRSVPH-RGPVT 317

Query: 317 NILLV 319
           N+ ++
Sbjct: 323 NVFII 317

[Close]
BLAST of Cmc07g0183971 vs. ExPASy Swiss-Prot
Match: Q499N3 (WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.7e-40
Identity = 98/313 (31.31%), Postives = 158/313 (50.48%), Query Frame = 0 

Query: 17  WDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGSVLYWSW---CKPQVEV 76
           W+LH+GA  L Y+   + P GL  +  ++L        AA  G     +W    K Q++ 
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYL-------LAAQQGKNYICAWELQRKDQLQQ 82

Query: 77  KSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDS 136
           K     P+  L +   G Y++  G +  IYLWEV +G LL     HY+ V+CL F+ D S
Sbjct: 83  KIMCPGPVTCLTTAPNGLYVL-AGIAESIYLWEVSTGNLLVILSRHYQDVSCLKFTGDGS 142

Query: 137 LLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVVVGYGGFNAIIISS 196
             +S  +D  +  WSL +V      R       H ++ H LP+TD+  G+GG  A + ++
Sbjct: 143 HFVSAGKDCLVLAWSLCSVLQADPSRILAP--RHVWSQHTLPITDLHCGFGGPMARVATA 202

Query: 197 SVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSS 256
           S+D+T K+W++S G LL +++F   I ++ +D  EH  + GG DG I+   L ++ P   
Sbjct: 203 SLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGGSDGSIFQVDLCSR-PGPR 262

Query: 257 DYGLHILGSLSNQSK----SVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVIRVFGHSK 316
           +       +     K     VT L+  + G++L+SGS D ++R+WD ++   +R     K
Sbjct: 263 EQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVRLWDVKSKQCVRTV-PLK 322

Query: 317 GPVNNILLVQQQP 323
           GPV N  +    P
Sbjct: 323 GPVTNAAITLAPP 323

[Close]
BLAST of Cmc07g0183971 vs. ExPASy TrEMBL
Match: A0A1S3BU36 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4 SV=1)

HSP 1 Score: 914.1 bits (2361), Expect = 2.3e-262
Identity = 444/447 (99.33%), Postives = 445/447 (99.55%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD+V
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360
           VIRVF HSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 447

[Close]
BLAST of Cmc07g0183971 vs. ExPASy TrEMBL
Match: A0A0A0KZT0 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1)

HSP 1 Score: 894.0 bits (2309), Expect = 2.5e-256
Identity = 433/447 (96.87%), Postives = 440/447 (98.43%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVLLVASSSIDSGIGCWDLHTG+EQLRYKSCASPPHGLVCVG KFLACSQLRD AATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGS 60

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASN+EGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCLVFSEDDSLL+SGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD+V
Sbjct: 121 RAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGS+SNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360
           VIRVF HSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRP+LPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPLLPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKES  FSFLSSHVMD+QITELQQQGSAAT MELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGMELERLKHDYGKSKQMLQHWRK 420

Query: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 448
           MYDNLHQFCVNELLDGNQTKNIEGNST
Sbjct: 421 MYDNLHQFCVNELLDGNQTKNIEGNST 447

[Close]
BLAST of Cmc07g0183971 vs. ExPASy TrEMBL
Match: A0A5D3D9F7 (Protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003270 PE=4 SV=1)

HSP 1 Score: 859.8 bits (2220), Expect = 5.2e-246
Identity = 418/421 (99.29%), Postives = 419/421 (99.52%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS
Sbjct: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY
Sbjct: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTD+V
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISG EDGAIRVWDTRTNN
Sbjct: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGYEDGAIRVWDTRTNN 300

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360
           VIRVF HSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV
Sbjct: 301 VIRVFRHSKGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEYTGV 360

Query: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420
           IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK
Sbjct: 361 IIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHWRK 420

Query: 421 M 422
           M
Sbjct: 421 M 421

[Close]
BLAST of Cmc07g0183971 vs. ExPASy TrEMBL
Match: A0A6J1FMG7 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC111446741 PE=4 SV=1)

HSP 1 Score: 810.4 bits (2092), Expect = 3.6e-231
Identity = 395/442 (89.37%), Postives = 415/442 (93.89%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVL+VASSS+DSGIGCWDLHTGAEQLRYKSCASP HGLVCVGE+FLACSQLRD AAT+GS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLRYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCLVFSEDDSLLISGSEDGC+RVWSL+ VFDDGWQRE+KHLYEHSFTGHNLPVTD+V
Sbjct: 121 RAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAK PSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQ--STSQGSLRKHRPILPPALAKFENSKDEDEYT 360
           +IRV  HSKGPVNN+L+V+QQ LP SQ   TSQGSLRKHR +LPPALAKF NSKD+DE T
Sbjct: 301 IIRVLKHSKGPVNNLLIVRQQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHW 420
           GVII  SGPP ESM FS +SSHVMDNQITELQQQGSAAT MELERLK DYGKS QM Q W
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGMELERLKRDYGKSMQMQQQW 420

Query: 421 RKMYDNLHQFCVNELLDGNQTK 441
           RK+YDNLHQ+CVNELLDG+QTK
Sbjct: 421 RKLYDNLHQYCVNELLDGDQTK 442

[Close]
BLAST of Cmc07g0183971 vs. ExPASy TrEMBL
Match: A0A6J1IYT8 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 PE=4 SV=1)

HSP 1 Score: 801.2 bits (2068), Expect = 2.2e-228
Identity = 391/442 (88.46%), Postives = 412/442 (93.21%), Query Frame = 0 

Query: 1   MVLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGS 60
           MVL+VASSS+DSGIGCWDLHTGAEQL YKSCASP HGLVCVGE+FLACSQLRD AAT+GS
Sbjct: 1   MVLVVASSSVDSGIGCWDLHTGAEQLCYKSCASPAHGLVCVGERFLACSQLRDPAATSGS 60

Query: 61  VLYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHY 120
           VLYWSW KPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLL KWHAHY
Sbjct: 61  VLYWSWFKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLMKWHAHY 120

Query: 121 RAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVV 180
           RAVTCL FSEDDSLLISGSEDGC+RVWSL+ VFDDGWQRE+KHLYEHSFTGHNLPVTD+V
Sbjct: 121 RAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEHSFTGHNLPVTDIV 180

Query: 181 VGYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240
           +GYGG NAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI
Sbjct: 181 IGYGGSNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKI 240

Query: 241 YTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNN 300
           YTAALNAK PSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAI+VWDTRTNN
Sbjct: 241 YTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIKVWDTRTNN 300

Query: 301 VIRVFGHSKGPVNNILLVQQQPLPKSQ--STSQGSLRKHRPILPPALAKFENSKDEDEYT 360
           +IRV  HSKGPVNN+L+VQ Q LP SQ   TSQGSLRKHR +LPPALAKF NSKD+DE T
Sbjct: 301 IIRVLKHSKGPVNNLLIVQHQLLPTSQLNPTSQGSLRKHRSLLPPALAKFGNSKDDDEDT 360

Query: 361 GVIIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQHW 420
           GVII  SGPP ESM FS +SSHVMD+QITELQQQGSAAT MELERLK +YGKS QM Q W
Sbjct: 361 GVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATGMELERLKREYGKSMQMQQQW 420

Query: 421 RKMYDNLHQFCVNELLDGNQTK 441
           RK+YDNLHQ+CVNELLDG+QTK
Sbjct: 421 RKLYDNLHQYCVNELLDGDQTK 442

[Close]
BLAST of Cmc07g0183971 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 513.8 bits (1322), Expect = 1.3e-145
Identity = 257/436 (58.94%), Postives = 323/436 (74.08%), Query Frame = 0 

Query: 2   VLLVASSSIDSGIGCWDLHTGAEQLRYKSCASPPHGLVCVGEKFLACSQLRDAAATAGSV 61
           + ++ASSSID GIG WDL TG EQL++K CASP HGL  VGEKFLA SQL  A  T+GS+
Sbjct: 3   ITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQL-SARNTSGSI 62

Query: 62  LYWSWCKPQVEVKSFPAEPIMALASNNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYR 121
            YWSW KPQ EVKS+P EPI ALA+NNEGTY+VGGG SGDIYLWEV +G+LLKKWH HYR
Sbjct: 63  FYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYR 122

Query: 122 AVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVVV 181
           +VTCLVFS DDSLL+SGS+DG IRVWSLI +FDD  +++   LYEH+F  H + VTD+V+
Sbjct: 123 SVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVI 182

Query: 182 GYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIY 241
            YGG NA+IISSS DRTCKVWSLS+GKLL+NIIFPS+I+A+ALDPG  VFY G RD KIY
Sbjct: 183 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 242

Query: 242 TAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNV 301
             A+NA    +S+YG  +LGS+S + K++T LAYC+ GNLLISGSEDG + VWD ++   
Sbjct: 243 IGAINA----TSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 302

Query: 302 IRVFGHS----KGPVNNILLVQQQPLPKSQSTSQGSLRKHRPILPPALAKFENSKDEDEY 361
           +R   H+    KGPVNNI +V++  +  S  T Q S +    ++PP L K+E    ED  
Sbjct: 303 VRTLIHAKGSRKGPVNNIQIVRKTIVANSNKT-QVSWKSRGALIPPPLEKYERPV-EDTM 362

Query: 362 TGVI-IDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEMELERLKHDYGKSKQMLQ 421
            G++ +DP       +  SFLS+ ++D Q+ ELQQQGSAATEME+ERLK +Y +S QM +
Sbjct: 363 DGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERLKLEYKRSLQMNE 422

Query: 422 HWRKMYDNLHQFCVNE 433
            W+K Y+NL Q  + E
Sbjct: 423 QWQKNYENLLQVVMEE 431

[Close]
BLAST of Cmc07g0183971 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-16
Identity = 59/213 (27.70%), Postives = 97/213 (45.54%), Query Frame = 0 

Query: 87  NNEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRAVTCLVFSEDDSLLISGSEDGCIRV 146
           N +   IV G F   + +W+V +G+ LK   AH   VT + F+ D SL++S S DG  R+
Sbjct: 122 NPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRI 181

Query: 147 WSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVVVGYGGFNAIIISSSVDRTCKVWSLSK 206
           W      D G      H  +      N PV+ V     G    I+  ++D T ++W++S 
Sbjct: 182 W------DSG----TGHCVKTLIDDENPPVSFVRFSPNG--KFILVGTLDNTLRLWNISS 241

Query: 207 GKLLRNIIFP-----SIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILG 266
            K L+           I  A ++  G+ +   G  D  ++   LN+K          +L 
Sbjct: 242 AKFLKTYTGHVNAQYCISSAFSVTNGKRI-VSGSEDNCVHMWELNSK---------KLLQ 301

Query: 267 SLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVW 295
            L   +++V ++A   + NL+ SGS D  +R+W
Sbjct: 302 KLEGHTETVMNVACHPTENLIASGSLDKTVRIW 312

[Close]
BLAST of Cmc07g0183971 vs. TAIR 10
Match: AT4G02730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 4.2e-14
Identity = 64/265 (24.15%), Postives = 114/265 (43.02%), Query Frame = 0 

Query: 81  IMALASNNEGTYIVGGGFSGDIYLWEVLSG-RLLKKWHAHYRAVTCLVFSEDDSLLISGS 140
           I  LA +++  Y         + +W+  S    LK    H   V C+ F+   +L++SGS
Sbjct: 88  ISDLAWSSDSHYTCSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGS 147

Query: 141 EDGCIRVWSLITVFDDGWQREAKHLYEHSFTGHNLPVTDVVVGYGGFNAIIISSSVDRTC 200
            D  IR+W + T                    H++P++ V     G  ++I+S+S D +C
Sbjct: 148 FDETIRIWEVKT-----------GKCVRMIKAHSMPISSVHFNRDG--SLIVSASHDGSC 207

Query: 201 KVWSLSKGKLLRNII---FPSIIDAIALDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYG 260
           K+W   +G  L+ +I    P++            F     +GK    A        S+Y 
Sbjct: 208 KIWDAKEGTCLKTLIDDKSPAV-----------SFAKFSPNGKFILVATLDSTLKLSNYA 267

Query: 261 ----LHILGSLSNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNVI-RVFGHSKGP 320
               L +    +N+   +TS    ++G  ++SGSED  + +WD +  N++ R+ GH+   
Sbjct: 268 TGKFLKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHT--- 324

Query: 321 VNNILLVQQQPLPKSQSTSQGSLRK 337
            + ++ V   P+    S+S   L K
Sbjct: 328 -DAVISVSCHPVQNEISSSGNHLDK 324

[Close]
BLAST of Cmc07g0183971 vs. TAIR 10
Match: AT2G47410.1 (WD40/YVTN repeat-like-containing domain;Bromodomain )

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-13
Identity = 61/204 (29.90%), Postives = 89/204 (43.63%), Query Frame = 0 

Query: 113 LKKWHAHYRAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGH 172
           +KK   H  AV C +F      +I+GS+D  +++WS+ T            L   S  GH
Sbjct: 229 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-----------LCLASCRGH 288

Query: 173 NLPVTDVVVGYGGFNAIIISSSVDRTCKVWSLSKG---KLLRNIIFPSIIDAIALDPGEH 232
              +TD+ V     NA++ S+S D   +VW L  G    +LR       + AIA  P + 
Sbjct: 289 EGDITDLAVSSN--NALVASASNDFVIRVWRLPDGMPISVLRG--HTGAVTAIAFSPRQA 348

Query: 233 VFY---GGGRDG--KIYTAALN-----AKCPSSSDYGLHILGSLSN--QSKSVTSLAYCS 292
             Y       DG  +I+ A  +        PS SD      GS SN  QS  +   AY +
Sbjct: 349 SVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDAN---TGSTSNASQSHQILCCAYNA 408

Query: 293 SGNLLISGSEDGAIRVWDTRTNNV 302
           +G + ++GS D   RVW     N+
Sbjct: 409 NGTIFVTGSSDSNARVWSASKPNL 414

[Close]
BLAST of Cmc07g0183971 vs. TAIR 10
Match: AT2G47410.2 (WD40/YVTN repeat-like-containing domain;Bromodomain )

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-13
Identity = 61/204 (29.90%), Postives = 89/204 (43.63%), Query Frame = 0 

Query: 113 LKKWHAHYRAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEHSFTGH 172
           +KK   H  AV C +F      +I+GS+D  +++WS+ T            L   S  GH
Sbjct: 228 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-----------LCLASCRGH 287

Query: 173 NLPVTDVVVGYGGFNAIIISSSVDRTCKVWSLSKG---KLLRNIIFPSIIDAIALDPGEH 232
              +TD+ V     NA++ S+S D   +VW L  G    +LR       + AIA  P + 
Sbjct: 288 EGDITDLAVSSN--NALVASASNDFVIRVWRLPDGMPISVLRG--HTGAVTAIAFSPRQA 347

Query: 233 VFY---GGGRDG--KIYTAALN-----AKCPSSSDYGLHILGSLSN--QSKSVTSLAYCS 292
             Y       DG  +I+ A  +        PS SD      GS SN  QS  +   AY +
Sbjct: 348 SVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDAN---TGSTSNASQSHQILCCAYNA 407

Query: 293 SGNLLISGSEDGAIRVWDTRTNNV 302
           +G + ++GS D   RVW     N+
Sbjct: 408 NGTIFVTGSSDSNARVWSASKPNL 413

The following BLAST results are available for this feature:
BLAST of Cmc07g0183971 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452567.14.8e-26299.33PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo][more]
XP_011654116.25.1e-25696.87protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus][more]
KGN55205.15.1e-25696.87hypothetical protein Csa_012375 [Cucumis sativus][more]
KAA0064393.11.1e-24599.29protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo var. makuwa] >TYK20193.1 prote... [more]
XP_038898957.11.2e-24192.38protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida][more]
BLAST of Cmc07g0183971 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M3B41.9e-14458.94Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1... [more]
Q9BV386.1e-4233.12WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2[more]
Q3SZD41.4e-4132.37WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1[more]
A0A1L8HX761.8e-4133.11WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1[more]
Q499N35.7e-4031.31WD repeat-containing protein 18 OS=Rattus norvegicus OX=10116 GN=Wdr18 PE=2 SV=1[more]
BLAST of Cmc07g0183971 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BU362.3e-26299.33protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4... [more]
A0A0A0KZT02.5e-25696.87WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G... [more]
A0A5D3D9F75.2e-24699.29Protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A6J1FMG73.6e-23189.37protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC11144674... [more]
A0A6J1IYT82.2e-22888.46protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 ... [more]
BLAST of Cmc07g0183971 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G49180.11.3e-14558.94Transducin/WD40 repeat-like superfamily protein [more]
AT3G49660.11.5e-1627.70Transducin/WD40 repeat-like superfamily protein [more]
AT4G02730.14.2e-1424.15Transducin/WD40 repeat-like superfamily protein [more]
AT2G47410.13.6e-1329.90WD40/YVTN repeat-like-containing domain;Bromodomain [more]
AT2G47410.23.6e-1329.90WD40/YVTN repeat-like-containing domain;Bromodomain [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 282..296
score: 40.4
coord: 135..149
score: 40.52
coord: 190..204
score: 36.27
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 206..244
e-value: 350.0
score: 1.0
coord: 109..148
e-value: 4.7E-10
score: 49.4
coord: 256..295
e-value: 3.3E-7
score: 39.9
coord: 162..203
e-value: 0.003
score: 26.8
coord: 69..106
e-value: 1.4
score: 16.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 260..295
e-value: 9.1E-7
score: 29.5
coord: 167..203
e-value: 0.0022
score: 18.8
coord: 111..148
e-value: 4.4E-7
score: 30.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 116..149
score: 13.983944
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 263..304
score: 16.256382
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 169..212
score: 9.672996
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 2..214
e-value: 5.1E-33
score: 116.2
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 215..322
e-value: 1.4E-15
score: 59.3
NoneNo IPR availablePANTHERPTHR18763:SF0WD REPEAT-CONTAINING PROTEIN 18coord: 2..433
NoneNo IPR availablePANTHERPTHR18763WD-REPEAT PROTEIN 18coord: 2..433
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 263..298
score: 12.367405
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 116..149
score: 11.5765
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 282..296
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 5..316

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc07g0183971.1Cmc07g0183971.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0006364 rRNA processing
cellular_component GO:0005656 nuclear pre-replicative complex
cellular_component GO:0097344 Rix1 complex
molecular_function GO:0005515 protein binding