Cmc06g0178271 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0178271
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	LSD1 zinc finger family protein
Location	CMiso1.1chr06: 34828606 .. 34834085 (+)
RNA-Seq Expression	Cmc06g0178271
Synteny	Cmc06g0178271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTTAGTGAGGCTTCACCCACCTCAAGATATGCCTTCAAGTAATTGTGCTCATTCTTTTGATCACTAGTTGATAATCAGTTCATATACAGGGTGATATTTAAACGTTACAAATTATAGGCAAATTTTAGATCCATTTGAAAAGCTGAAATATAAACATGTAGACTATCTTGTTAGTCTGTTAAGAAAGAAGAAGGCACATTATTATTATTATTTTTCTTTCTCCTTTTTCCTCCTACAATTGGCGTGTTTATCAGTGTCAACTTTTTTGGAGGGAGGGATTTTCCTTTCCAAAGTGGTTCTGAAGTCAACGTCTTTACTCCTAAAAACCTACATTTACTGCAACCTGCAAAGGTATGCCAAGGTCATTGGTATAATTTCGTCCAGTTTTCTTTTGATTTCCTTTCATATGTTAGTCACTTCATTGTTCTTTTTACTAAGCAGTTCTTCTAAATCCAGAGATGGTAGAAACGAAGACAAAGCACGGTGTAGTCTTTCCCTGAGAAACCGAGTGTTGAAGAAATTCAGCTGGAAAAGAAGTTTCTTCAACATCACAAAAATGCCGTTTCCATCAGTTACTTGTATGACTACTCAACCCCAAAGCTTCAAGTTTGGATATAATTTGAATTATTTTCCTGTTTAGATCTGAGAACAAGTAACAAATTTCTAGTGTAAGATGGCTATTATTGTTTGTATACAAGGCCAAGAAATTTTTAGTACTAAGGAGACAAGCTCTCAACCAACATGAACAAAGAAACTTATGGAGAGAATTTGATATCCATATAACTAGAGTTAGATCCTATTCGTACAAAAACGACTAATGAATTGATTTCACGTCATACATGCTTTTTTTTTTAAGAATTGAAACTTGTTTGGGGAATAGGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATATGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTTACTCCTGTTCCAACTTCTGGTTTGTTTCTATATCCTTCCAATTTTCTTTTTATCTTTTTTGAAAATTTGCTTTGATCATAATTCAAATATTCTTTTCTCGAATTTTAGTGAAATTAGAATAGTTAAAAAAGGGCTGTGATCTCGTTTGTTCCAACTTTAATTCCCAACCATCCGGTGACCATGTTTGTTCTGAAGACATCGAAAAATGAGTAATTTTCTCATGATAGTTTTTTTGTGCTAGTTACTGGCTACTGCCATTATGATTTCGCCTAAAATTTCATTCCATCGAAATTGTTTATTATTGAAAAAAAAAAAAACAAAACCATGATTTCATAAATCATCATTATGGGCAAAGAGATAAAGCTAAACACTCAAATTGATTTGAAGTGATAAGTTCTAATCAAATGGGAGGTTGAACTCCATTTACTATCTGTTAGGATACTACCTTAACCAGAATTAATATCTGAAATATACTGAGAATTAAAGAATGACTACAATATAACACAAATTTATGGTACTTTGAGAACCCCTCTTTTGAGTGTTCTCACCCAAGCCCTAGATTACTCCACAAAATAGCTAAGAAGCACAGACACTTTTACTTTGGCTAGCGTGTTCGTGTTTGATACATGTCGGACACTTGGACACTCGAACACTCGGTGGATACCTGTTGAACACTTGTTAACACAACAAATGCGTTCGACATACATAGAACACTCGTTAAGTAGACTAAAAAGACACATATATGACAATAATAATAACTTTTGAGTGTAGAATACATCAAGCTAAGTTTTTTAAGCATATAAATGCATCAATGCATTTACTATTATTTTTTTTTTACTGTAAAGATAGTATATATTTTTTAAAAACAATTTTTTTAATAAACGTGATCTTGCCGTATCGTGTCCTAGAGTTTTAAAAAATGGTGTCACCGTGTCCATGCTTCTTAGCAAAATAGTCGTCTCTCCTTCAATCACTCACCCTCATACTATTTATACACATTCAGTAACTAACTTTCCATATAATGACCAATATATCCCTTAATATTAGCATACTAATATTCCTATCTAGGTACGTAACACTATCTTTACGTCTATCGTCATTCTTGTTGGTCGCTCTCTGCTGACTACAGAGTAAAGAAAGGGTGGAAGTAGTGAGGTTGTTACTAAATGGAGAATAGGTGGTTGAGTTTGCCTAGATGTTCATAATTATTAACAAAGAAATAAATTAATGATGATGGTGACTTGGTTCCTTATATGCTCGCAATTGTTTATAGTTAGAATATGATTGGTTTCGAATATGACCCTTAAGCAGGCTTAACGATGGCTCGGCTGGTGTGCAGTGGCTGCTACACTCTGCTCATGTACAGTCGTGGGGCGACAAGTGTTCAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTAAAGGTAAATTGTTACAACTAAATGTTTTCATATGTATAGTCTTTTATTGTTTTCATTAAAACTTCTGTGAAGAGTGAATACTTATGTCATGTTTACCTGGGGATAGTTTTGATTTCTTGCCATCCAAATCGGCCATCATAGAGCTATAGTACCGCACCTTCAAAACCTTAGCTTTACCTTAAAACCACTCATCAAAAGGCCTATTTGTGATATCTTTTAACAAGGCACCTAGAAAAACTACGTCCTCACCTTTGTAGCATGAAGAATAAAGTTGTGGCAGATGACTAACCCGAATCTCGCTATGTTTATTGGCCTTTTCGTTAAGATTAAGTGTAGTATGAATAGATATAGCCAAAATAAATACAATTCAACTTGCATAAAATTTATACTATCGATCTTAAGATATGAGGTTCAATTCTTTTACCCCATGCATTGTTAAAAGTACTAAAGTAGAGAGTGTGAAAGAAAAAAAGGATAAATACTCCGTGTTAAAATGTTTTGAATCTGTTATCTAACTCTTCAAATGACCAAACATGGGATCTTTCGTACGTATCTTATACTTTCTTGCTTCTTCAGGATATAAAACAGTTTCTCTTCCTATCTGTAGATTTTACTAACACATCGTGAGTGAACTACATAAATCTATGTGTTAATTTCTTCTTGTTTGATTCTTTTTTTGTCGGTTATATGTCATGATATATGTCGAAATTATACTAGTTCAGTGTAAATTCAGGAAATTTGCATCTCCAATTATCATTATTGATGGTTTAATTTAATCCAACCTCCTCAGAGTCTTATCAGATTGATTTTGAATCGTGGTTACAAACAGCAAATCAGATGGCTCATACCAACTGTGGGAACTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGCACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTCTAATTAGTTCATAATTTCCCCCTTTTGTTTTTCCATCTCAAACTTCACAGCACTTGGATCTATAAAGATGAACCCTAAAAATCACAACCTTCTATAATGGTTTATAAAAAATGTTCTTTTTTAAGAAGAAAAGTTAAGATCAGAAGTGTTTTCTAGGTTGGGAGAGATAGAATCATGACTTCAAAAGAGAGAGTGCAGGCCAATTATCGAAAACCCGAACCAACTTATCGTAAAAGGAAATTTATTAAAAAGAAGATAATATATTCTCTTATGTAAGAGATCTTTATGTTATCTACGTTGTTTAACAATTTTATAATTTTCCTTTATGTTACGGTATTTATTATTTTTCACTCCTATCTTCCATTTTCTTCTTTACTATTGCTTTCTTTCGCTAACCTGAACAAAAAATTATTATAGCTAAGACTAAAATAGATATTTCAATCAAATTATTACTTTTAACTCGAAATAAATTTTTGAAGTATAGATAGAATATAAAACATTTAATATATTTTCAAGATATTATCATTAGTTTTAACCTTTATTATAATTTTTCCTACATTATATATATGTCTTAGAAAATATCCTAAACGTAAATTAGTTTCAAAATATTGCAGATTTGCTTATCACTTGATTGAATGATAATATTTAGACAGAAAACATATATATAATCAATTTTGGACTTTTTGTTTGGAAGAAAAAGGGAGAAAGGAAACGTGGCAAGTTAAGCAATGCATGAGCGACAAGTGGAATCCAACGTGTAATGGTTTAGAAGCCTATTATGATTTTCCTTTTTGATATATATTATATAATATGTTTTGTTTTTGAAATGATTTAAAATTTGTGGAAGAAATCAGATAGAAAGAGAGATAATTATGCAATCTGCCATGGAGAAGCTGAGTAATATGGGAAGTGTTGCTAAAGAAAAGCTCAAAATTTTTAGAGCCAAACTCGACGAGAAGGTCTGCCTATGATTTTTCTTATATCATTTCAATTATCACTAAGTTAAAAGTTTCAGAGATAGCCCCAAGATATAACTCAGTTGAGTTTTAGTACTGTTGTAGGATTGTTTTCTCTCTCGGTTAGTTATATCGAGATCATTTTAATATATAGTTGATGATTTCTTATTTGGTTAAAATCTACCATGCATGGGAGTTGTATTTGATTAAGATCACAAACTAATAATTTATTAGATTAAAACTTGAATTATTAGTTTGTGTGTAGGCTCATTTAAATGACGGTTTTTACAAATTTGTAACTCTTAAATTTGTATGTTCAATAGCTCATTTGTTCTATTTGACATTAAGGTGTCTAATGCAACCCTTAAATTTATGTTCAACCATTCTTTTGAGTTTTTTAGGTCTTGATCGGTCTAATGTAAACAGACTAAAATTTTCATGGTTTCTAATGGATGCACTGATCTTAAAAGATTTAAAAAGTGGAACACCTCCGATCCAAGGAGCTATCTAGTGATGAAGTAAGTTTTAATTCTTGGGGCTGCATGGTAAGAGATATAGTTGATAAGATATAAAATTCAAACTTGTACTCTCAAATAAGGAATAGAGTTCATATTTCTTACCTCCTTACCCTACTTCAGCTTCTTGGTCCAAACACCATAAAGTTAGAAATTTTTTAGACTCGGGTTAAGAAGAAATAATGAGTTTAGTCTCCTGAGTTTGATAGAGGGTTTGACAGGGGACGTGTTTGGTCCATGCATGGTGGCAAACACACTCAAAACACATGCATGGTGACCAACCCACTCAAATTTCTTGATGAAGAGTTAGGAAAAAAGGGAAAAGGATATTTGAAACCTTTTTAATTCTAAAACTCTAAACATTATATATTACATACTCGCAATGTCGTATTTCTACTGGTATGTAAGATAGGCAGTTTATTGTGAGAATTCAAAATGAATGCAAACAACAGGTGGAGAAAGCTTCGGTGAAGACGGCGGAGGAGAGAAAGATTGTGGAGGAGAGAAGGAAGGCAGCAACAGCGGAGGCAAAGCGTGAGCTACACGAGGCGAAAGCAAGACATGCTGCTCAAAAGCTAAGGAATAGGAAATCACATGTACTTGGTGGTGGCCATCTACACCATCATTCACCGGTGGAGGGTGGTGCCGCCACACATCTT

mRNA sequence

ATCTTTAGTGAGGCTTCACCCACCTCAAGATATGCCTTCAAGTAATTGTGCTCATTCTTTTGATCACTAGTTGATAATCAGTTCATATACAGGGTGATATTTAAACGTTACAAATTATAGGCAAATTTTAGATCCATTTGAAAAGCTGAAATATAAACATGTAGACTATCTTGTTAGTCTGTTAAGAAAGAAGAAGGCACATTATTATTATTATTTTTCTTTCTCCTTTTTCCTCCTACAATTGGCGTGTTTATCAGTGTCAACTTTTTTGGAGGGAGGGATTTTCCTTTCCAAAGTGGTTCTGAAGTCAACGTCTTTACTCCTAAAAACCTACATTTACTGCAACCTGCAAAGATGGTAGAAACGAAGACAAAGCACGGTGTAGTCTTTCCCTGAGAAACCGAGTGTTGAAGAAATTCAGCTGGAAAAGAAGTTTCTTCAACATCACAAAAATGCCGTTTCCATCAGTTACTTGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATATGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTTACTCCTGTTCCAACTTCTGGCTTAACGATGGCTCGGCTGGTGTGCAGTGGCTGCTACACTCTGCTCATGTACAGTCGTGGGGCGACAAGTGTTCAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTAAAGAGTCTTATCAGATTGATTTTGAATCGTGGTTACAAACAGCAAATCAGATGGCTCATACCAACTGTGGGAACTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGCACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTCTAATTAGTTCATAATTTCCCCCTTTTGTTTTTCCATCTCAAACTTCACAGCACTTGGATCTATAAAGATGAACCCTAAAAATCACAACCTTCTATAATGGTTTATAAAAAATGTTCTTTTTTAAGAAGAAAAGTTAAGATCAGAAGTGTTTTCTAGGTTGGGAGAGATAGAATCATGACTTCAAAAGAGAGAGTGCAGGCCAATTATCGAAAACCCGAACCAACTTATCGTAAAAGGAAATTTATTAAAAAGAAGATAATATATTCTCTTATGTAAGAGATCTTTATGTTATCTACGTTGTTTAACAATTTTATAATTTTCCTTTATGTTACGGTATTTATTATTTTTCACTCCTATCTTCCATTTTCTTCTTTACTATTGCTTTCTTTCGCTAACCTGAACAAAAAATTATTATAGCTAAGACTAAAATAGATATTTCAATCAAATTATTACTTTTAACTCGAAATAAATTTTTGAAGTATAGATAGAATATAAAACATTTAATATATTTTCAAGATATTATCATTAGTTTTAACCTTTATTATAATTTTTCCTACATTATATATATGTCTTAGAAAATATCCTAAACGTAAATTAGTTTCAAAATATTGCAGATTTGCTTATCACTTGATTGAATGATAATATTTAGACAGAAAACATATATATAATCAATTTTGGACTTTTTGTTTGGAAGAAAAAGGGAGAAAGGAAACGTGGCAAGTTAAGCAATGCATGAGCGACAAGTGGAATCCAACGTATAGAAAGAGAGATAATTATGCAATCTGCCATGGAGAAGCTGAGTAATATGGGAAGTGTTGCTAAAGAAAAGCTCAAAATTTTTAGAGCCAAACTCGACGAGAAGGTGGAGAAAGCTTCGGTGAAGACGGCGGAGGAGAGAAAGATTGTGGAGGAGAGAAGGAAGGCAGCAACAGCGGAGGCAAAGCGTGAGCTACACGAGGCGAAAGCAAGACATGCTGCTCAAAAGCTAAGGAATAGGAAATCACATGTACTTGGTGGTGGCCATCTACACCATCATTCACCGGTGGAGGGTGGTGCCGCCACACATCTT

Coding sequence (CDS)

ATGCCGTTTCCATCAGTTACTTGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATATGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTTACTCCTGTTCCAACTTCTGGCTTAACGATGGCTCGGCTGGTGTGCAGTGGCTGCTACACTCTGCTCATGTACAGTCGTGGGGCGACAAGTGTTCAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTAAAGAGTCTTATCAGATTGATTTTGAATCGTGGTTACAAACAGCAAATCAGATGGCTCATACCAACTGTGGGAACTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGCACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTCTAATTAG

Protein sequence

MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSVKCTLCNFVTSVGILRSN

Homology

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BLAST of Cmc06g0178271 vs. NCBI nr
Match: XP_008448702.2 (PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900659.1 PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900660.1 PREDICTED: protein LSD1 isoform X2 [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 3.4e-73
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60
           MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL
Sbjct: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60

Query: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHS 120
           LMYSRGATSVQCSCCRTINAASKESYQIDFE WLQTANQMAHTNCGNCRVLLMYQCEAHS
Sbjct: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFELWLQTANQMAHTNCGNCRVLLMYQCEAHS 120

Query: 121 VKCTLCNFVTSVGILR 137
           VKCTLCNFVTSVGILR
Sbjct: 121 VKCTLCNFVTSVGILR 136

[Close]

BLAST of Cmc06g0178271 vs. NCBI nr
Match: XP_008448703.1 (PREDICTED: protein LOL1 isoform X1 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 9.2e-63
Identity = 123/136 (90.44%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60
           MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL
Sbjct: 51  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 110

Query: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHS 120
           LMYSRGATSVQCSCCRTINAASK             ANQMAHTNCGNCRVLLMYQCEAHS
Sbjct: 111 LMYSRGATSVQCSCCRTINAASK-------------ANQMAHTNCGNCRVLLMYQCEAHS 170

Query: 121 VKCTLCNFVTSVGILR 137
           VKCTLCNFVTSVGILR
Sbjct: 171 VKCTLCNFVTSVGILR 173

[Close]

BLAST of Cmc06g0178271 vs. NCBI nr
Match: XP_031738784.1 (protein LSD1 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 1.9e-60
Identity = 119/138 (86.23%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60
           MPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL
Sbjct: 1   MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60

Query: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHS 120
           LMYSRGA SVQCSCCRTINAAS+             ANQMAH NCGNCRVLLMYQCEAHS
Sbjct: 61  LMYSRGAKSVQCSCCRTINAASE-------------ANQMAHINCGNCRVLLMYQCEAHS 120

Query: 121 VKCTLCNFVTSVGILRSN 139
           VKCTLCNFVTSVGILR N
Sbjct: 121 VKCTLCNFVTSVGILRFN 125

[Close]

BLAST of Cmc06g0178271 vs. NCBI nr
Match: KAE8650032.1 (hypothetical protein Csa_010851 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 1.9e-60
Identity = 119/138 (86.23%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60
           MPFP VTCCQNQIMCSGCKN+LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL
Sbjct: 378 MPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 437

Query: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHS 120
           LMYSRGA SVQCSCCRTINAAS+             ANQMAH NCGNCRVLLMYQCEAHS
Sbjct: 438 LMYSRGAKSVQCSCCRTINAASE-------------ANQMAHINCGNCRVLLMYQCEAHS 497

Query: 121 VKCTLCNFVTSVGILRSN 139
           VKCTLCNFVTSVGILR N
Sbjct: 498 VKCTLCNFVTSVGILRFN 502

[Close]

BLAST of Cmc06g0178271 vs. NCBI nr
Match: XP_038903355.1 (protein LSD1-like [Benincasa hispida])

HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52
Identity = 105/134 (78.36%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60
           MPFP VTCC+N I+CSGCK +LIYPAGAT ICCALCH V+PVPTSGLTMARLVCSGC+TL
Sbjct: 1   MPFPPVTCCENHIVCSGCKILLIYPAGATFICCALCHTVSPVPTSGLTMARLVCSGCHTL 60

Query: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHS 120
           LMYSRGATSVQCSCCRT+NAAS+             ANQMAH NCGNCRV+LMYQ  AHS
Sbjct: 61  LMYSRGATSVQCSCCRTVNAASE-------------ANQMAHINCGNCRVVLMYQFGAHS 120

Query: 121 VKCTLCNFVTSVGI 135
           VKCTLCNFVTSVGI
Sbjct: 121 VKCTLCNFVTSVGI 121

[Close]

BLAST of Cmc06g0178271 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.9e-41
Identity = 81/133 (60.90%), Postives = 97/133 (72.93%), Query Frame = 0


Query: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60
           +PF      Q+Q++CSGC+N+L+YPAGATS+CCA+C  VT VP  G  MA+LVC GC+TL
Sbjct: 54  VPFTPPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTL 113

Query: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHS 120
           LMY RGATSVQCSCC T+N A +             ANQ+AH NCGNCR+LLMYQ  A S
Sbjct: 114 LMYIRGATSVQCSCCHTVNLAME-------------ANQVAHVNCGNCRMLLMYQYGARS 173

Query: 121 VKCTLCNFVTSVG 134
           VKC +CNFVTSVG
Sbjct: 174 VKCAVCNFVTSVG 173

[Close]

BLAST of Cmc06g0178271 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-39
Identity = 80/132 (60.61%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 2   PFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLL 61
           P    T  Q+Q++CSGC+N+L+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLL
Sbjct: 24  PANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 83

Query: 62  MYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSV 121
           MY RGATSVQCSCC T+N A +             ANQ+AH NCGNC +LLMYQ  A SV
Sbjct: 84  MYIRGATSVQCSCCHTVNLALE-------------ANQVAHVNCGNCMMLLMYQYGARSV 142

Query: 122 KCTLCNFVTSVG 134
           KC +CNFVTSVG
Sbjct: 144 KCAVCNFVTSVG 142

[Close]

BLAST of Cmc06g0178271 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.7e-31
Identity = 62/126 (49.21%), Postives = 87/126 (69.05%), Query Frame = 0


Query: 10  QNQIMCSGCKNMLIYPAGATSICCALCHAV-TPVPTSGLTMARLVCSGCYTLLMYSRGAT 69
           Q+QI+C GC+N+L+YP GA S+CCA+CHAV +  P+ G+ +A L+C GC TLLMY+R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 70  SVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSVKCTLCNF 129
           SV+CSCC T+N              ++  + +AH NCG C+ +LMY   A SVKC +CNF
Sbjct: 62  SVRCSCCDTVNL-------------VRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNF 114

Query: 130 VTSVGI 135
           +T+ G+
Sbjct: 122 ITNTGM 114

[Close]

BLAST of Cmc06g0178271 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.9e-28
Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 10  QNQIMCSGCKNMLIYPAGATSICCALCHAVT--PVPTSGLTMARLVCSGCYTLLMYSRGA 69
           Q+QI+C GC+++L YP+GA S+CCALC A+T  P P   + MA L+C GC TLLMY+R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 70  TSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSVKCTLCN 129
            +V+CSCC T+N              ++  N +AH +CG CR  LMY   A SVKC +C+
Sbjct: 62  DTVRCSCCSTVNL-------------VRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICH 115

Query: 130 FVTSVGI 135
           ++T+ G+
Sbjct: 122 YITNTGM 115

[Close]

BLAST of Cmc06g0178271 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-27
Identity = 59/127 (46.46%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 10  QNQIMCSGCKNMLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRGA 69
           Q+Q++C GC+N+L+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 70  TSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSVKCTLCN 129
           +SV+CSCC+T N     S Q+        ++Q+A  NCG+CR  LMY   A SVKC +C 
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAH----APSSQVAQINCGHCRTTLMYPYGASSVKCAVCQ 126

Query: 130 FVTSVGI 135
           FVT+V +
Sbjct: 127 FVTNVNM 129

[Close]

BLAST of Cmc06g0178271 vs. ExPASy TrEMBL
Match: A0A1S3BJQ2 (protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.6e-73
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60
           MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL
Sbjct: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60

Query: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHS 120
           LMYSRGATSVQCSCCRTINAASKESYQIDFE WLQTANQMAHTNCGNCRVLLMYQCEAHS
Sbjct: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFELWLQTANQMAHTNCGNCRVLLMYQCEAHS 120

Query: 121 VKCTLCNFVTSVGILR 137
           VKCTLCNFVTSVGILR
Sbjct: 121 VKCTLCNFVTSVGILR 136

[Close]

BLAST of Cmc06g0178271 vs. ExPASy TrEMBL
Match: A0A1S3BKC0 (protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.5e-63
Identity = 123/136 (90.44%), Postives = 123/136 (90.44%), Query Frame = 0


Query: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60
           MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL
Sbjct: 51  MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 110

Query: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHS 120
           LMYSRGATSVQCSCCRTINAASK             ANQMAHTNCGNCRVLLMYQCEAHS
Sbjct: 111 LMYSRGATSVQCSCCRTINAASK-------------ANQMAHTNCGNCRVLLMYQCEAHS 170

Query: 121 VKCTLCNFVTSVGILR 137
           VKCTLCNFVTSVGILR
Sbjct: 171 VKCTLCNFVTSVGILR 173

[Close]

BLAST of Cmc06g0178271 vs. ExPASy TrEMBL
Match: A0A6J1CWA3 (protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.4e-47
Identity = 93/133 (69.92%), Postives = 107/133 (80.45%), Query Frame = 0


Query: 1   MPFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTL 60
           MP P VTCCQ++++CSGCKN+LIYP GATSICC LCH+V+PVPT GL MARLVC GC+TL
Sbjct: 1   MPIPPVTCCQSRMVCSGCKNLLIYPVGATSICCTLCHSVSPVPTPGLEMARLVCKGCHTL 60

Query: 61  LMYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHS 120
           L++SRGATSVQCSCCRT+N+ASK             ANQ A  NC NCR+LLMYQC AHS
Sbjct: 61  LLFSRGATSVQCSCCRTVNSASK-------------ANQTAEINCRNCRMLLMYQCGAHS 120

Query: 121 VKCTLCNFVTSVG 134
           V+CTLCNFVT VG
Sbjct: 121 VRCTLCNFVTLVG 120

[Close]

BLAST of Cmc06g0178271 vs. ExPASy TrEMBL
Match: A0A4Y7KPP1 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_049613 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.5e-39
Identity = 82/124 (66.13%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 10  QNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATS 69
           Q+Q++CSGC+N+L+YP GATS+CCA+C+AVTPVP  G  MA+LVC+GC+TLLMY RGATS
Sbjct: 23  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTPVPPPGTEMAQLVCAGCHTLLMYIRGATS 82

Query: 70  VQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSVKCTLCNFV 129
           VQCSCC TIN A +             ANQ+AH NCGNCR+LLMYQ  A SVKCT+CNFV
Sbjct: 83  VQCSCCHTINLAME-------------ANQVAHVNCGNCRMLLMYQYGARSVKCTVCNFV 133

Query: 130 TSVG 134
           TSVG
Sbjct: 143 TSVG 133

[Close]

BLAST of Cmc06g0178271 vs. ExPASy TrEMBL
Match: A0A5N6R6W4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012417 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.6e-39
Identity = 83/134 (61.94%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 4   PSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMY 63
           P+V   Q+Q++CSGC+N+L+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY
Sbjct: 18  PAVNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMY 77

Query: 64  SRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSVKC 123
            RGATSVQCSCC T+N A +             ANQ+AH NCGNCR+LLMYQ  A SVKC
Sbjct: 78  IRGATSVQCSCCHTVNLALE-------------ANQVAHVNCGNCRMLLMYQYGARSVKC 137

Query: 124 TLCNFVTSVGILRS 138
            +CNFVTSVG L S
Sbjct: 138 AVCNFVTSVGALAS 138

[Close]

BLAST of Cmc06g0178271 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 164.1 bits (414), Expect = 8.1e-41
Identity = 80/132 (60.61%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 2   PFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLL 61
           P    T  Q+Q++CSGC+N+L+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLL
Sbjct: 24  PANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 83

Query: 62  MYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSV 121
           MY RGATSVQCSCC T+N A +             ANQ+AH NCGNC +LLMYQ  A SV
Sbjct: 84  MYIRGATSVQCSCCHTVNLALE-------------ANQVAHVNCGNCMMLLMYQYGARSV 142

Query: 122 KCTLCNFVTSVG 134
           KC +CNFVTSVG
Sbjct: 144 KCAVCNFVTSVG 142

[Close]

BLAST of Cmc06g0178271 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 164.1 bits (414), Expect = 8.1e-41
Identity = 80/131 (61.07%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 3   FPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLM 62
           F   T  Q+Q++CSGC+N+L+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLM
Sbjct: 58  FVGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLM 117

Query: 63  YSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSVK 122
           Y RGATSVQCSCC T+N A +             ANQ+AH NCGNC +LLMYQ  A SVK
Sbjct: 118 YIRGATSVQCSCCHTVNLALE-------------ANQVAHVNCGNCMMLLMYQYGARSVK 175

Query: 123 CTLCNFVTSVG 134
           C +CNFVTSVG
Sbjct: 178 CAVCNFVTSVG 175

[Close]

BLAST of Cmc06g0178271 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 164.1 bits (414), Expect = 8.1e-41
Identity = 80/132 (60.61%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 2   PFPSVTCCQNQIMCSGCKNMLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLL 61
           P    T  Q+Q++CSGC+N+L+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLL
Sbjct: 24  PANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 83

Query: 62  MYSRGATSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSV 121
           MY RGATSVQCSCC T+N A +             ANQ+AH NCGNC +LLMYQ  A SV
Sbjct: 84  MYIRGATSVQCSCCHTVNLALE-------------ANQVAHVNCGNCMMLLMYQYGARSV 142

Query: 122 KCTLCNFVTSVG 134
           KC +CNFVTSVG
Sbjct: 144 KCAVCNFVTSVG 142

[Close]

BLAST of Cmc06g0178271 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 59/127 (46.46%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 10  QNQIMCSGCKNMLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRGA 69
           Q+Q++C GC+N+L+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 70  TSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSVKCTLCN 129
           +SV+CSCC+T N     S Q+        ++Q+A  NCG+CR  LMY   A SVKC +C 
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAH----APSSQVAQINCGHCRTTLMYPYGASSVKCAVCQ 126

Query: 130 FVTSVGI 135
           FVT+V +
Sbjct: 127 FVTNVNM 129

[Close]

BLAST of Cmc06g0178271 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 59/127 (46.46%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 10  QNQIMCSGCKNMLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRGA 69
           Q+Q++C GC+N+L+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 70  TSVQCSCCRTINAASKESYQIDFESWLQTANQMAHTNCGNCRVLLMYQCEAHSVKCTLCN 129
           +SV+CSCC+T N     S Q+        ++Q+A  NCG+CR  LMY   A SVKC +C 
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAH----APSSQVAQINCGHCRTTLMYPYGASSVKCAVCQ 121

Query: 130 FVTSVGI 135
           FVT+V +
Sbjct: 122 FVTNVNM 124

The following BLAST results are available for this feature:

BLAST of Cmc06g0178271 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448702.2	3.4e-73	99.26	PREDICTED: protein LSD1 isoform X2 [Cucumis melo] >XP_016900659.1 PREDICTED: pro...	[more]
XP_008448703.1	9.2e-63	90.44	PREDICTED: protein LOL1 isoform X1 [Cucumis melo]	[more]
XP_031738784.1	1.9e-60	86.23	protein LSD1 [Cucumis sativus]	[more]
KAE8650032.1	1.9e-60	86.23	hypothetical protein Csa_010851 [Cucumis sativus]	[more]
XP_038903355.1	2.5e-52	78.36	protein LSD1-like [Benincasa hispida]	[more]

BLAST of Cmc06g0178271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J7V9	7.9e-41	60.90	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q93ZB1	1.1e-39	60.61	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q2QMB3	9.7e-31	49.21	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	5.9e-28	46.46	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	2.2e-27	46.46	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of Cmc06g0178271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BJQ2	1.6e-73	99.26	protein LSD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A1S3BKC0	4.5e-63	90.44	protein LOL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490794 PE=4 SV=1	[more]
A0A6J1CWA3	3.4e-47	69.92	protein LSD1-like OS=Momordica charantia OX=3673 GN=LOC111014817 PE=4 SV=1	[more]
A0A4Y7KPP1	1.5e-39	66.13	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_049613 PE=4 SV=1	[more]
A0A5N6R6W4	2.6e-39	61.94	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012417 PE=4 SV=1	[more]

BLAST of Cmc06g0178271 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	8.1e-41	60.61	lsd one like 1	[more]
AT1G32540.1	8.1e-41	61.07	lsd one like 1	[more]
AT1G32540.3	8.1e-41	60.61	lsd one like 1	[more]
AT4G20380.2	1.6e-28	46.46	LSD1 zinc finger family protein	[more]
AT4G20380.1	1.6e-28	46.46	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 12..41 e-value: 2.1E-12 score: 44.4 coord: 52..79 e-value: 4.2E-12 score: 43.5 coord: 103..132 e-value: 2.5E-7 score: 28.2
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 54..78 e-value: 2.8E-10 score: 39.8 coord: 105..129 e-value: 2.6E-9 score: 36.8 coord: 15..39 e-value: 5.0E-10 score: 39.0
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 6..136
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 6..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0178271.1	Cmc06g0178271.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus