Cmc06g0174621 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0174621
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr06: 31629939 .. 31630442 (+)
RNA-Seq Expression	Cmc06g0174621
Synteny	Cmc06g0174621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGATAGTGAAATTACACGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGATAAAGTGTTCTTAA

mRNA sequence

ATGTCTGAGATAGTGAAATTACACGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGATAAAGTGTTCTTAA

Coding sequence (CDS)

ATGTCTGAGATAGTGAAATTACACGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATTCAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGATAAAGTGTTCTTAA

Protein sequence

MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIKCS

Homology

[Close]

BLAST of Cmc06g0174621 vs. NCBI nr
Match: KAA0063715.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.4 bits (864), Expect = 6.9e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1    MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
            MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 1241 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 1300

Query: 61   DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
            DMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRL
Sbjct: 1301 DMLRACALEFPGSWDSHLHLMEFAYNNSYQATLGMAPFEALYGKCCRSPVCWGEVGEQRL 1360

Query: 121  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 1361 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 1405

[Close]

BLAST of Cmc06g0174621 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 337.0 bits (863), Expect = 9.0e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
           MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 623 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 682

Query: 61  DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
           DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL
Sbjct: 683 DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRL 742

Query: 121 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 743 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 787

[Close]

BLAST of Cmc06g0174621 vs. NCBI nr
Match: KAA0066456.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.0e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1    MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
            MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 1198 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 1257

Query: 61   DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
            DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL
Sbjct: 1258 DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRL 1317

Query: 121  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 1318 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 1362

[Close]

BLAST of Cmc06g0174621 vs. NCBI nr
Match: KAA0062245.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.0e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1    MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
            MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 1263 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 1322

Query: 61   DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
            DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SPVCWGEVGEQRL
Sbjct: 1323 DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRL 1382

Query: 121  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 1383 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 1427

[Close]

BLAST of Cmc06g0174621 vs. NCBI nr
Match: KAA0060413.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.0e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1    MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
            MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 914  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLE 973

Query: 61   DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
            DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL
Sbjct: 974  DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 1033

Query: 121  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 1034 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 1078

[Close]

BLAST of Cmc06g0174621 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 4    IVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 63
            ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMG 123
            R      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLE 160
             E  Q T +  Q ++  ++T   + K Y D++ +++E
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIE 1190

[Close]

BLAST of Cmc06g0174621 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 4    IVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 63
            ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMG 123
            R      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLE 160
             E  Q T +  Q ++  ++T   + K Y D++ +++E
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIE 1190

[Close]

BLAST of Cmc06g0174621 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 4    IVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 63
            ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMG 123
            R      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLE 160
             E  Q T +  Q ++  ++T   + K Y D++ +++E
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIE 1190

[Close]

BLAST of Cmc06g0174621 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 4    IVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 63
            ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMG 123
            R      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLE 160
             E  Q T +  Q ++  ++T   + K Y D++ +++E
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIE 1190

[Close]

BLAST of Cmc06g0174621 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 4    IVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDML 63
            ++   G P  I++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +L
Sbjct: 1037 VIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLL 1096

Query: 64   RACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMG 123
            R      P +W  H+ L++ +YNN+  +   M PFE ++      SP+   E+       
Sbjct: 1097 RCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKT 1156

Query: 124  PELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLE 160
             E  Q T +  Q ++  ++T   + K Y D++ +++E
Sbjct: 1157 DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIE 1190

[Close]

BLAST of Cmc06g0174621 vs. ExPASy TrEMBL
Match: A0A5A7VCR4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002380 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.4e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1    MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
            MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 1241 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 1300

Query: 61   DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
            DMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRL
Sbjct: 1301 DMLRACALEFPGSWDSHLHLMEFAYNNSYQATLGMAPFEALYGKCCRSPVCWGEVGEQRL 1360

Query: 121  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 1361 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 1405

[Close]

BLAST of Cmc06g0174621 vs. ExPASy TrEMBL
Match: A0A5A7UWP7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002300 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1    MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
            MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQT+MGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 914  MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTSMGTRLDFSTAFHPQTDGQTERLNQVLE 973

Query: 61   DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
            DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL
Sbjct: 974  DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 1033

Query: 121  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 1034 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 1078

[Close]

BLAST of Cmc06g0174621 vs. ExPASy TrEMBL
Match: A0A5A7VJE2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005560 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1    MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
            MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 1198 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 1257

Query: 61   DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
            DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL
Sbjct: 1258 DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRL 1317

Query: 121  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 1318 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 1362

[Close]

BLAST of Cmc06g0174621 vs. ExPASy TrEMBL
Match: A0A5A7V8L8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00080 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1    MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
            MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 1263 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 1322

Query: 61   DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
            DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCC+SPVCWGEVGEQRL
Sbjct: 1323 DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCKSPVCWGEVGEQRL 1382

Query: 121  MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
            MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 1383 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 1427

[Close]

BLAST of Cmc06g0174621 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 162/165 (98.18%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MSEIVKLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 60
           MSEIV+LHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE
Sbjct: 623 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLE 682

Query: 61  DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRL 120
           DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRL
Sbjct: 683 DMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRL 742

Query: 121 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGIK 166
           MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVG K
Sbjct: 743 MGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDK 787

The following BLAST results are available for this feature:

BLAST of Cmc06g0174621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063715.1	6.9e-89	98.18	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	9.0e-89	98.18	pol protein [Cucumis melo subsp. melo]	[more]
KAA0066456.1	9.0e-89	98.18	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062245.1	9.0e-89	98.18	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060413.1	9.0e-89	98.18	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0174621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.5e-17	31.21	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.5e-17	31.21	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.5e-17	31.21	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.5e-17	31.21	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.5e-17	31.21	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0174621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCR4	3.4e-89	98.18	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UWP7	4.4e-89	98.18	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002300 PE...	[more]
A0A5A7VJE2	4.4e-89	98.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7V8L8	4.4e-89	98.18	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00080 PE...	[more]
Q84KB0	4.4e-89	98.18	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Cmc06g0174621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..149 e-value: 4.1E-33 score: 116.3
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 7..103
None	No IPR available	PANTHER	PTHR46148:SF39	SUBFAMILY NOT NAMED	coord: 7..103
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..105 score: 15.501014
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0174621.1	Cmc06g0174621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding