Cmc06g0174161 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0174161
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribonuclease H
Location	CMiso1.1chr06: 31071553 .. 31072524 (+)
RNA-Seq Expression	Cmc06g0174161
Synteny	Cmc06g0174161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAAAGTGTCAAATTTATATGGATAATATCCATGTAGCAGCATCTCCATTGCATATCTTGTCAGCACCATGGCCATTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGCCATCGTTTTATTCTTGTGGCCATTGATTACTTCACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTCAAGTTTATCAAGAAAGAGCTTATATGTCGTTATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGCACTTCAAGATCAATCACCGAAATTCGACTCCATATCGCCCAAAGATGAATGGGGCAGTTGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATTACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGTTGCATGGATATCGCACGTCAGTTCGTACTTCAACTGGGGCAACACCATTTTCTTTAGTTTATGGTATGGAAGTTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATTTCGTTGAAGAAAAAAGGTTGGCAGCATTAAATCATGGGCAACTTTACCAAAGAAGACTAATGCGAGCATATAATAAGAAAGTGCATCCTCGAAGCTTTCGAGAGGGAGATTTGATATTAAAAAGAATACTTCCGTTTCAAAAGGATCATCGAGGAAAATGGACTCCTAATTATAAAGGTCCATTTGTAGTGAAAAAAGCTTTTTCAGAAGGCGCTCTACTTTTGACTAATATGGATGGCGTCGAGTTAAAAAATCCTGTGAATTCAGATTATGTTCGAAGATATTATGCATGA

mRNA sequence

ATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAAAGTGTCAAATTTATATGGATAATATCCATGTAGCAGCATCTCCATTGCATATCTTGTCAGCACCATGGCCATTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGCCATCGTTTTATTCTTGTGGCCATTGATTACTTCACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTCAAGTTTATCAAGAAAGAGCTTATATGTCGTTATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGCACTTCAAGATCAATCACCGAAATTCGACTCCATATCGCCCAAAGATGAATGGGGCAGTTGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATTACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGTTGCATGGATATCGCACGTCAGTTCGTACTTCAACTGGGGCAACACCATTTTCTTTAGTTTATGGTATGGAAGTTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATTTCGTTGAAGAAAAAAGGTTGGCAGCATTAAATCATGGGCAACTTTACCAAAGAAGACTAATGCGAGCATATAATAAGAAAGTGCATCCTCGAAGCTTTCGAGAGGGAGATTTGATATTAAAAAGAATACTTCCGTTTCAAAAGGATCATCGAGGAAAATGGACTCCTAATTATAAAGGTCCATTTGTAGTGAAAAAAGCTTTTTCAGAAGGCGCTCTACTTTTGACTAATATGGATGGCGTCGAGTTAAAAAATCCTGTGAATTCAGATTATGTTCGAAGATATTATGCATGA

Coding sequence (CDS)

ATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAAAGTGTCAAATTTATATGGATAATATCCATGTAGCAGCATCTCCATTGCATATCTTGTCAGCACCATGGCCATTTTCTTTATGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGCCATCGTTTTATTCTTGTGGCCATTGATTACTTCACTAAATGGATAGAGGCTGCATCTTATTGCAATGTTACAAGGGGAGTAGTGCTCAAGTTTATCAAGAAAGAGCTTATATGTCGTTATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGCACTTCAAGATCAATCACCGAAATTCGACTCCATATCGCCCAAAGATGAATGGGGCAGTTGAGGCAGCTAACAAAAATATTAAAAGAATCATTGAGAAAATTACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGTTGCATGGATATCGCACGTCAGTTCGTACTTCAACTGGGGCAACACCATTTTCTTTAGTTTATGGTATGGAAGTTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATTTCGTTGAAGAAAAAAGGTTGGCAGCATTAAATCATGGGCAACTTTACCAAAGAAGACTAATGCGAGCATATAATAAGAAAGTGCATCCTCGAAGCTTTCGAGAGGGAGATTTGATATTAAAAAGAATACTTCCGTTTCAAAAGGATCATCGAGGAAAATGGACTCCTAATTATAAAGGTCCATTTGTAGTGAAAAAAGCTTTTTCAGAAGGCGCTCTACTTTTGACTAATATGGATGGCGTCGAGTTAAAAAATCCTGTGAATTCAGATTATGTTCGAAGATATTATGCATGA

Protein sequence

MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEHFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQLYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALLLTNMDGVELKNPVNSDYVRRYYA

Homology

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BLAST of Cmc06g0174161 vs. NCBI nr
Match: KAA0037621.1 (uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa])

HSP 1 Score: 649.4 bits (1674), Expect = 1.6e-182
Identity = 309/323 (95.67%), Postives = 315/323 (97.52%), Query Frame = 0


Query: 1    MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
            MESDCIKY RECKKCQIYMD IHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRF 
Sbjct: 1616 MESDCIKYVRECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFT 1675

Query: 61   LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
            LV+IDYFTKWIE AS+CNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE
Sbjct: 1676 LVSIDYFTKWIEVASFCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 1735

Query: 121  HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
             FKINHRNSTPYRPKMNGAVEAANKNIKRIIEK+TITYKDWHEMLPFALHGYRTSVRTST
Sbjct: 1736 QFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTST 1795

Query: 181  GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
            GATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH Q
Sbjct: 1796 GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHVQ 1855

Query: 241  LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
            LYQRRLMRAYNKKVHPRSFREGDL+LKRILPFQKDHRGKWTPNY+GPFVVKKAFS GALL
Sbjct: 1856 LYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALL 1915

Query: 301  LTNMDGVELKNPVNSDYVRRYYA 324
            LTNMDG+ELKNPVNSDYVRRYYA
Sbjct: 1916 LTNMDGIELKNPVNSDYVRRYYA 1938

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BLAST of Cmc06g0174161 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 646.0 bits (1665), Expect = 1.8e-181
Identity = 306/323 (94.74%), Postives = 315/323 (97.52%), Query Frame = 0


Query: 1    MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
            MESDCIKYARECKKCQIYMD IH AASPLH+LSAPWPFSLWG+DVIGPIDPKASNGHRFI
Sbjct: 2313 MESDCIKYARECKKCQIYMDRIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI 2372

Query: 61   LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
            LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE
Sbjct: 2373 LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 2432

Query: 121  HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
             FKINHRNSTPYRPKMNGAVEAANKNIKRIIEK+T TYKDWHE+LPFALHGYRTSVRTST
Sbjct: 2433 KFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTTTYKDWHEILPFALHGYRTSVRTST 2492

Query: 181  GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
            GATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+HGQ
Sbjct: 2493 GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSHGQ 2552

Query: 241  LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
            LYQ+RLMRAYNKKVHPRSFREGDL+LKRILPF KDHRGKWTPNY+GPFVVKKAFS GALL
Sbjct: 2553 LYQKRLMRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALL 2612

Query: 301  LTNMDGVELKNPVNSDYVRRYYA 324
            LTNMDGVELKNPVNSDYVRRYYA
Sbjct: 2613 LTNMDGVELKNPVNSDYVRRYYA 2635

[Close]

BLAST of Cmc06g0174161 vs. NCBI nr
Match: XP_031738857.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus])

HSP 1 Score: 646.0 bits (1665), Expect = 1.8e-181
Identity = 306/323 (94.74%), Postives = 315/323 (97.52%), Query Frame = 0


Query: 1    MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
            MESDCIKYARECKKCQIYMD IH AASPLH+LSAPWPFSLWG+DVIGPIDPKASNGHRFI
Sbjct: 1981 MESDCIKYARECKKCQIYMDRIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI 2040

Query: 61   LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
            LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE
Sbjct: 2041 LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 2100

Query: 121  HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
             FKINHRNSTPYRPKMNGAVEAANKNIKRIIEK+T TYKDWHE+LPFALHGYRTSVRTST
Sbjct: 2101 KFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTTTYKDWHEILPFALHGYRTSVRTST 2160

Query: 181  GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
            GATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+HGQ
Sbjct: 2161 GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSHGQ 2220

Query: 241  LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
            LYQ+RLMRAYNKKVHPRSFREGDL+LKRILPF KDHRGKWTPNY+GPFVVKKAFS GALL
Sbjct: 2221 LYQKRLMRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALL 2280

Query: 301  LTNMDGVELKNPVNSDYVRRYYA 324
            LTNMDGVELKNPVNSDYVRRYYA
Sbjct: 2281 LTNMDGVELKNPVNSDYVRRYYA 2303

[Close]

BLAST of Cmc06g0174161 vs. NCBI nr
Match: XP_031742240.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus])

HSP 1 Score: 646.0 bits (1665), Expect = 1.8e-181
Identity = 306/323 (94.74%), Postives = 315/323 (97.52%), Query Frame = 0


Query: 1    MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
            MESDCIKYARECKKCQIYMD IH AASPLH+LSAPWPFSLWG+DVIGPIDPKASNGHRFI
Sbjct: 1889 MESDCIKYARECKKCQIYMDRIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI 1948

Query: 61   LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
            LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE
Sbjct: 1949 LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 2008

Query: 121  HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
             FKINHRNSTPYRPKMNGAVEAANKNIKRIIEK+T TYKDWHE+LPFALHGYRTSVRTST
Sbjct: 2009 KFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTTTYKDWHEILPFALHGYRTSVRTST 2068

Query: 181  GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
            GATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+HGQ
Sbjct: 2069 GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSHGQ 2128

Query: 241  LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
            LYQ+RLMRAYNKKVHPRSFREGDL+LKRILPF KDHRGKWTPNY+GPFVVKKAFS GALL
Sbjct: 2129 LYQKRLMRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALL 2188

Query: 301  LTNMDGVELKNPVNSDYVRRYYA 324
            LTNMDGVELKNPVNSDYVRRYYA
Sbjct: 2189 LTNMDGVELKNPVNSDYVRRYYA 2211

[Close]

BLAST of Cmc06g0174161 vs. NCBI nr
Match: XP_031742474.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116404360 [Cucumis sativus])

HSP 1 Score: 644.0 bits (1660), Expect = 6.7e-181
Identity = 305/323 (94.43%), Postives = 314/323 (97.21%), Query Frame = 0


Query: 1    MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
            MESDCIKYARECKKCQIYMD IH AASPLH+LSAPWPFSLWG+DVIGPIDPKASNGHRFI
Sbjct: 1750 MESDCIKYARECKKCQIYMDRIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI 1809

Query: 61   LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
            LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE
Sbjct: 1810 LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 1869

Query: 121  HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
             FKINHRNSTPYRPKMNGAVE ANKNIKRIIEK+T TYKDWHE+LPFALHGYRTSVRTST
Sbjct: 1870 KFKINHRNSTPYRPKMNGAVEXANKNIKRIIEKMTTTYKDWHEILPFALHGYRTSVRTST 1929

Query: 181  GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
            GATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+HGQ
Sbjct: 1930 GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSHGQ 1989

Query: 241  LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
            LYQ+RLMRAYNKKVHPRSFREGDL+LKRILPF KDHRGKWTPNY+GPFVVKKAFS GALL
Sbjct: 1990 LYQKRLMRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALL 2049

Query: 301  LTNMDGVELKNPVNSDYVRRYYA 324
            LTNMDGVELKNPVNSDYVRRYYA
Sbjct: 2050 LTNMDGVELKNPVNSDYVRRYYA 2072

[Close]

BLAST of Cmc06g0174161 vs. ExPASy Swiss-Prot
Match: P26809 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) OX=11797 GN=pol PE=3 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-17
Identity = 67/237 (28.27%), Postives = 114/237 (48.10%), Query Frame = 0


Query: 56   GHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMM 115
            G++++LV ID F+ W+EA      T  VV K + +E+  R+G+P+ + TDN     +K+ 
Sbjct: 1465 GYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 1524

Query: 116  DELCEHFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITIT--YKDWHEMLPFALHGYR 175
              + +   ++ +    YRP+ +G VE  N+ IK  + K+T+    +DW  +LP AL+  R
Sbjct: 1525 QTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1584

Query: 176  TSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRL 235
             +     G TP+ ++YG     P  V  P   +   AK+     ++   + L  V+ +  
Sbjct: 1585 NTPGPH-GLTPYEILYGAP---PPLVNFPDPDM---AKVTHNPSLQAHLQALYLVQHEVW 1644

Query: 236  AALNHGQLYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVV 291
              L     YQ +L    ++ V P  FR GD +  R     +       P +KGP+ V
Sbjct: 1645 RPL--AAAYQEQL----DRPVVPHPFRVGDTVWVR-----RHQTKNLEPRWKGPYTV 1683

[Close]

BLAST of Cmc06g0174161 vs. ExPASy Swiss-Prot
Match: P26810 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate 57) OX=11796 GN=pol PE=3 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-17
Identity = 66/237 (27.85%), Postives = 114/237 (48.10%), Query Frame = 0


Query: 56   GHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMM 115
            G++++LV +D F+ W+EA      T  VV K + +E+  R+G+P+ + TDN     +K+ 
Sbjct: 1466 GYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 1525

Query: 116  DELCEHFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITIT--YKDWHEMLPFALHGYR 175
              + +   ++ +    YRP+ +G VE  N+ IK  + K+T+    +DW  +LP AL+  R
Sbjct: 1526 QTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1585

Query: 176  TSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRL 235
             +     G TP+ ++YG     P  V  P   +   AK+     ++   + L  V+ +  
Sbjct: 1586 NTPGPH-GLTPYEILYGAP---PPLVNFPDPDM---AKVTHNPSLQAHLQALYLVQHEVW 1645

Query: 236  AALNHGQLYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVV 291
              L     YQ +L    ++ V P  FR GD +  R     +       P +KGP+ V
Sbjct: 1646 RPL--AAAYQEQL----DRPVVPHPFRVGDTVWVR-----RHQTKNLEPRWKGPYTV 1684

[Close]

BLAST of Cmc06g0174161 vs. ExPASy Swiss-Prot
Match: P26808 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) OX=11798 GN=pol PE=3 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-17
Identity = 66/237 (27.85%), Postives = 114/237 (48.10%), Query Frame = 0


Query: 56   GHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMM 115
            G++++LV +D F+ W+EA      T  VV K + +E+  R+G+P+ + TDN     +K+ 
Sbjct: 1465 GYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 1524

Query: 116  DELCEHFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITIT--YKDWHEMLPFALHGYR 175
              + +   ++ +    YRP+ +G VE  N+ IK  + K+T+    +DW  +LP AL+  R
Sbjct: 1525 QTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1584

Query: 176  TSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRL 235
             +     G TP+ ++YG     P  V  P   +   AK+     ++   + L  V+ +  
Sbjct: 1585 NTPGPH-GLTPYEILYGAP---PPLVNFPDPDM---AKVTHNPSLQAHLQALYLVQHEVW 1644

Query: 236  AALNHGQLYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVV 291
              L     YQ +L    ++ V P  FR GD +  R     +       P +KGP+ V
Sbjct: 1645 RPL--AAAYQEQL----DRPVVPHPFRVGDTVWVR-----RHQTKNLEPRWKGPYTV 1683

[Close]

BLAST of Cmc06g0174161 vs. ExPASy Swiss-Prot
Match: P03360 (Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=pol PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 2.2e-17
Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 0


Query: 37   PFSLWGMDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRY 96
            P   W +D    I   A  G++++LV +D F+ W+EA      T  VV+K +  ++I R+
Sbjct: 867  PGEHWEVDFTEMI--TAKGGYKYLLVLVDTFSGWVEAYPAKRETSQVVIKHLIHDIIPRF 926

Query: 97   GLPEGIITDNAKNLNNKMMDELCEHFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITI 156
            GLP  I +DN      K+  +LCE   ++ +    YRP+ +G VE  N+ +K  I K+ I
Sbjct: 927  GLPVQIGSDNGPAFVAKVTQQLCEALNVSWKLHCAYRPQSSGQVERMNRTLKETIAKLRI 986

Query: 157  -TYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGME 193
             T  DW  +LP AL   R +     G +PF ++YG++
Sbjct: 987  ETGGDWVSLLPQALLRARCTPGRE-GLSPFEILYGLK 1020

[Close]

BLAST of Cmc06g0174161 vs. ExPASy Swiss-Prot
Match: P03355 (Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) OX=928306 GN=gag-pol PE=1 SV=5)

HSP 1 Score: 90.1 bits (222), Expect = 4.9e-17
Identity = 66/237 (27.85%), Postives = 114/237 (48.10%), Query Frame = 0


Query: 56   GHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMM 115
            G++++LV ID F+ WIEA      T  VV K + +E+  R+G+P+ + TDN     +K+ 
Sbjct: 1465 GYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 1524

Query: 116  DELCEHFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITIT--YKDWHEMLPFALHGYR 175
              + +   I+ +    YRP+ +G VE  N+ IK  + K+T+    +DW  +LP AL+  R
Sbjct: 1525 QTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 1584

Query: 176  TSVRTSTGATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRL 235
             +     G TP+ ++YG     P  V  P   +    ++  +  ++   + L  V+ +  
Sbjct: 1585 NTPGPH-GLTPYEILYGAP---PPLVNFPDPDM---TRVTNSPSLQAHLQALYLVQHEVW 1644

Query: 236  AALNHGQLYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVV 291
              L     YQ +L    ++ V P  +R GD +  R     +       P +KGP+ V
Sbjct: 1645 RPL--AAAYQEQL----DRPVVPHPYRVGDTVWVR-----RHQTKNLEPRWKGPYTV 1683

[Close]

BLAST of Cmc06g0174161 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 649.4 bits (1674), Expect = 7.7e-183
Identity = 309/323 (95.67%), Postives = 315/323 (97.52%), Query Frame = 0


Query: 1    MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
            MESDCIKY RECKKCQIYMD IHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRF 
Sbjct: 1616 MESDCIKYVRECKKCQIYMDKIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFT 1675

Query: 61   LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
            LV+IDYFTKWIE AS+CNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE
Sbjct: 1676 LVSIDYFTKWIEVASFCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 1735

Query: 121  HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
             FKINHRNSTPYRPKMNGAVEAANKNIKRIIEK+TITYKDWHEMLPFALHGYRTSVRTST
Sbjct: 1736 QFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTST 1795

Query: 181  GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
            GATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNH Q
Sbjct: 1796 GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHVQ 1855

Query: 241  LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
            LYQRRLMRAYNKKVHPRSFREGDL+LKRILPFQKDHRGKWTPNY+GPFVVKKAFS GALL
Sbjct: 1856 LYQRRLMRAYNKKVHPRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALL 1915

Query: 301  LTNMDGVELKNPVNSDYVRRYYA 324
            LTNMDG+ELKNPVNSDYVRRYYA
Sbjct: 1916 LTNMDGIELKNPVNSDYVRRYYA 1938

[Close]

BLAST of Cmc06g0174161 vs. ExPASy TrEMBL
Match: A0A5D3E1A3 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228G00260 PE=4 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 1.9e-173
Identity = 296/323 (91.64%), Postives = 303/323 (93.81%), Query Frame = 0


Query: 1   MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
           MESDCIKYARECKKCQIYMD IHVAASPLH++S PWPFSLWGMDVIGPIDPK SNGH FI
Sbjct: 47  MESDCIKYARECKKCQIYMDKIHVAASPLHVMSEPWPFSLWGMDVIGPIDPKTSNGHHFI 106

Query: 61  LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
           LV IDYFTKWIEAASY NV RGVVLKFIKKE ICRYGL E IITDNAKNLNNKMMDELCE
Sbjct: 107 LVVIDYFTKWIEAASYYNVIRGVVLKFIKKEFICRYGLLECIITDNAKNLNNKMMDELCE 166

Query: 121 HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
            FKINHRNSTPYRPKMNG VE ANKNIKRIIEK+TITYKDWHEMLPFALHGYRTSVRTST
Sbjct: 167 QFKINHRNSTPYRPKMNGTVEEANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTST 226

Query: 181 GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
           GA PF LVYGMEVVLPLEVE PSLRVL+EAKLDEAEWIRGRYEQLNFVEEK+L ALNH Q
Sbjct: 227 GAKPFFLVYGMEVVLPLEVETPSLRVLIEAKLDEAEWIRGRYEQLNFVEEKQLTALNHRQ 286

Query: 241 LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
           LYQRRLMRAYNKKVH RSFREGDL+LKRILPFQKDHRGKWTPNY+GPFVVKKAFSEGALL
Sbjct: 287 LYQRRLMRAYNKKVHTRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSEGALL 346

Query: 301 LTNMDGVELKNPVNSDYVRRYYA 324
           LTNMD VELKNPVNSDYVRRYYA
Sbjct: 347 LTNMDDVELKNPVNSDYVRRYYA 369

[Close]

BLAST of Cmc06g0174161 vs. ExPASy TrEMBL
Match: A0A5A7T1D0 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002530 PE=4 SV=1)

HSP 1 Score: 617.8 bits (1592), Expect = 2.5e-173
Identity = 296/323 (91.64%), Postives = 304/323 (94.12%), Query Frame = 0


Query: 1   MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
           MESDCIKYARECKKCQIYMD IHVAASPLH++S PWPFSLWGMDVIGPIDPK SNGHRFI
Sbjct: 47  MESDCIKYARECKKCQIYMDKIHVAASPLHVMSEPWPFSLWGMDVIGPIDPKTSNGHRFI 106

Query: 61  LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
           LV IDYFTKWIEAASY NVTRGVVLKFIKKE ICRYGL E IITDNAKNLNNKMMDELCE
Sbjct: 107 LVVIDYFTKWIEAASYYNVTRGVVLKFIKKEFICRYGLLECIITDNAKNLNNKMMDELCE 166

Query: 121 HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
            FKINHRNSTPY PKMNG VE ANKNIKRIIEK+TITYKDWHEMLPFALHGYRTSVRTST
Sbjct: 167 QFKINHRNSTPYLPKMNGTVEEANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTST 226

Query: 181 GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
           GA PF LVYGMEVVLPLEVE PSLRVL+EAKLDEAEWIRGRYEQLNFVEEK+L ALNH Q
Sbjct: 227 GAKPFFLVYGMEVVLPLEVETPSLRVLIEAKLDEAEWIRGRYEQLNFVEEKQLTALNHRQ 286

Query: 241 LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
           LYQRRLMRAYNKKVH RSFREGDL+LKRILPFQKDHRGKWTPNY+GPFVVKKAFS GALL
Sbjct: 287 LYQRRLMRAYNKKVHTRSFREGDLVLKRILPFQKDHRGKWTPNYEGPFVVKKAFSGGALL 346

Query: 301 LTNMDGVELKNPVNSDYVRRYYA 324
           LTNMDGVELK+PVNSDYVRRYYA
Sbjct: 347 LTNMDGVELKSPVNSDYVRRYYA 369

[Close]

BLAST of Cmc06g0174161 vs. ExPASy TrEMBL
Match: A0A6J1D7C7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1)

HSP 1 Score: 570.5 bits (1469), Expect = 4.6e-159
Identity = 263/323 (81.42%), Postives = 295/323 (91.33%), Query Frame = 0


Query: 1    MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
            +E+DCIKYAR+C KCQIY D  H  AS LH L+APWPFS+WGMDVIGPI+PKASNGHRFI
Sbjct: 1346 IETDCIKYARKCHKCQIYSDKTHAPASHLHTLTAPWPFSMWGMDVIGPIEPKASNGHRFI 1405

Query: 61   LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
            LVAIDYFTKW+EAASY +VT+GVV+KFIKKE+ICRYGLPE II+DNA+NLNNK+M ELCE
Sbjct: 1406 LVAIDYFTKWVEAASYRDVTKGVVVKFIKKEIICRYGLPETIISDNARNLNNKLMSELCE 1465

Query: 121  HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
             FKI H NSTPYRPKMNGAVEAANKNIKRI+EK+T+TY+DWHEMLPFALHGYRTSVRTST
Sbjct: 1466 QFKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTST 1525

Query: 181  GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
            GATPFSLVYGME VLP+EVEIPSLRV+MEAKL EAEW++ RYEQLNFVEEKRL AL  GQ
Sbjct: 1526 GATPFSLVYGMEAVLPIEVEIPSLRVIMEAKLQEAEWVQRRYEQLNFVEEKRLTALYRGQ 1585

Query: 241  LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
            LYQRR+M+AY+KKVH R FREGDL+LKRILP QKDHRGKWTPNY+GPFV+KKAFS GAL+
Sbjct: 1586 LYQRRMMKAYDKKVHSRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVLKKAFSGGALV 1645

Query: 301  LTNMDGVELKNPVNSDYVRRYYA 324
            L NMDG E  NP+NSD+VR+YYA
Sbjct: 1646 LANMDGTEFLNPINSDHVRKYYA 1668

[Close]

BLAST of Cmc06g0174161 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 560.1 bits (1442), Expect = 6.2e-156
Identity = 260/323 (80.50%), Postives = 292/323 (90.40%), Query Frame = 0


Query: 1    MESDCIKYARECKKCQIYMDNIHVAASPLHILSAPWPFSLWGMDVIGPIDPKASNGHRFI 60
            +E+DCIKYAR+C KCQIY D  H   S LH L+APWPFS+WGMDVIGPI+PKAS+GHRFI
Sbjct: 1380 IETDCIKYARKCHKCQIYSDKTHAPTSHLHTLTAPWPFSMWGMDVIGPIEPKASSGHRFI 1439

Query: 61   LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE 120
            LVAIDYFTKW+EAASY +VT+GVV+KFIKK++ICRYGLPE II+DNA+NLNNK+M ELCE
Sbjct: 1440 LVAIDYFTKWVEAASYRDVTKGVVVKFIKKKIICRYGLPETIISDNARNLNNKLMSELCE 1499

Query: 121  HFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKITITYKDWHEMLPFALHGYRTSVRTST 180
             FKI H NSTPYRPKMNGAVEAANKNIKRI+EK+T+TY DWHEMLPFALHGYRTSVRTST
Sbjct: 1500 QFKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYIDWHEMLPFALHGYRTSVRTST 1559

Query: 181  GATPFSLVYGMEVVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKRLAALNHGQ 240
            G TPFSLVYGMEVVL +EVEIPSLRV+MEAKL  AEW++ RYEQLNFVEEKRL AL  GQ
Sbjct: 1560 GTTPFSLVYGMEVVLLIEVEIPSLRVIMEAKLXRAEWVQRRYEQLNFVEEKRLTALCRGQ 1619

Query: 241  LYQRRLMRAYNKKVHPRSFREGDLILKRILPFQKDHRGKWTPNYKGPFVVKKAFSEGALL 300
            LYQRR+M+AY++KVHPR FREGDL+LKRILP QKDHRGKWTPNY+GPFVVKKAFS GAL+
Sbjct: 1620 LYQRRMMKAYDEKVHPRRFREGDLVLKRILPLQKDHRGKWTPNYEGPFVVKKAFSGGALV 1679

Query: 301  LTNMDGVELKNPVNSDYVRRYYA 324
            L NMDG E  NPVNSD+VR+YYA
Sbjct: 1680 LANMDGTEFLNPVNSDHVRKYYA 1702

The following BLAST results are available for this feature:

BLAST of Cmc06g0174161 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037621.1	1.6e-182	95.67	uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]	[more]
XP_031738551.1	1.8e-181	94.74	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]
XP_031738857.1	1.8e-181	94.74	LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]	[more]
XP_031742240.1	1.8e-181	94.74	LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus]	[more]
XP_031742474.1	6.7e-181	94.43	LOW QUALITY PROTEIN: uncharacterized protein LOC116404360 [Cucumis sativus]	[more]

BLAST of Cmc06g0174161 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26809	1.3e-17	28.27	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) OX=11797 GN=p...	[more]
P26810	1.7e-17	27.85	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate 57) OX=11796 GN=pol...	[more]
P26808	1.7e-17	27.85	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) OX=11798 G...	[more]
P03360	2.2e-17	33.76	Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=...	[more]
P03355	4.9e-17	27.85	Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) OX=92830...	[more]

BLAST of Cmc06g0174161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7R4	7.7e-183	95.67	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]
A0A5D3E1A3	1.9e-173	91.64	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7T1D0	2.5e-173	91.64	RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A6J1D7C7	4.6e-159	81.42	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1	[more]
A0A6J1DZ90	6.2e-156	80.50	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]

BLAST of Cmc06g0174161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 37..134 e-value: 2.0E-12 score: 47.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 31..192 score: 21.951826
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 30..228 e-value: 6.3E-52 score: 177.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 6..279
None	No IPR available	PANTHER	PTHR24559:SF342	SUBFAMILY NOT NAMED	coord: 6..279
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 35..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0174161.1	Cmc06g0174161.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding