Cmc06g0173761 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0173761
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 30658264 .. 30659730 (-)
RNA-Seq Expression	Cmc06g0173761
Synteny	Cmc06g0173761

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCAACAAACTTTAATTCAGTTCCTGTAACTGGTGTTGCTCATGGAGAGAAACCTGAAAAATTTGGTGGTGTTGATTTCAATCGTTGGCAACAAAAAATGTTGTTCTATCTCACCACTTTAAATTTGGCAAAGTTTCTCAAAGAGGATGCTCCCATTTTACCTGAGGGAGAAACTGACAAAGAAAAGCAACTTGCAGTAGATGCATGGAAACATGCAGAATACCTTTGCAAGAATTACATTCTAAATGGATTGGACAACACGCTGTGCAATGTGTATAGTAGTGTTGATTCAGCAAAAAATCTCTGGACTTCATTAGAGAAGAAGTACAAAACTGAAGTTGCTGGTACAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGAACTCCAAAACTGTAATCAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTCTTTTCAGGTAGCATCAATAATTGAAAAATTGCCACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTAGTAGTTCGACTTGGGATTGAGGAGAATAATAGAAAGGTAGAAAAGTGTATTGTAGATAGTACAGTAGATCCCAAGGCCAACATTGTGGAAAATAAACCACACACTAACAAGAAAAGGAAACTTTCTGATGAATGTTCAAATAAAAAACCGCGATTCACGAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGAACATGAATCTAAGGATTGTCGTAAGCCAAAGAACTTTCAGAAAAAACATGCTCAAGCTCATATCACAGAAGTTGATGAAGTATCAGATGATGTTGTAGATATTGACCTTTGTGCAGTCATTTCGGAGTGCAACATGGTGGGCAATTCCAAGGAATGGTGGGTAGACACTGATGCTACTCGTCATATTTGTACCAACAAGAATATGTTCACTTCATATGTGTCAGTCTCTAATGGAGAACAATTATTTATGGGTAACTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACCTCTGGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACGTTCTTAAGAACTTAGTTTCTGGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTTCAAGAATAAGATGTACATCGGAAAAGGTTATCTGAGTGATGATCTGTTTAAATTAAATGTACTCACAGTTGTACCCAAAAGTATTAATAATAATAAAATATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTCAACTTCAATTCTTTGTGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA

mRNA sequence

ATGACTTCAACAAACTTTAATTCAGTTCCTGTAACTGGTGTTGCTCATGGAGAGAAACCTGAAAAATTTGGTGGTGTTGATTTCAATCGTTGGCAACAAAAAATGTTGTTCTATCTCACCACTTTAAATTTGGCAAAGTTTCTCAAAGAGGATGCTCCCATTTTACCTGAGGGAGAAACTGACAAAGAAAAGCAACTTGCAGTAGATGCATGGAAACATGCAGAATACCTTTGCAAGAATTACATTCTAAATGGATTGGACAACACGCTGTGCAATGTGTATAGTAGTGTTGATTCAGCAAAAAATCTCTGGACTTCATTAGAGAAGAAGTACAAAACTGAAGTTGCTGGTACAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGAACTCCAAAACTGTAATCAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTCTTTTCAGGTAGCATCAATAATTGAAAAATTGCCACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTAGTAGTTCGACTTGGGATTGAGGAGAATAATAGAAAGGTAGAAAAGTGTATTGTAGATAGTACAGTAGATCCCAAGGCCAACATTGTGGAAAATAAACCACACACTAACAAGAAAAGGAAACTTTCTGATGAATGTTCAAATAAAAAACCGCGATTCACGAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGAACATGAATCTAAGGATTGTCGTAAGCCAAAGAACTTTCAGAAAAAACATGCTCAAGCTCATATCACAGAAGTTGATGAAGTATCAGATGATGTTGTAGATATTGACCTTTGTGCAGTCATTTCGGAGTGCAACATGGTGGGCAATTCCAAGGAATGGTGGGTAGACACTGATGCTACTCGTCATATTTGTACCAACAAGAATATGTTCACTTCATATGTGTCAGTCTCTAATGGAGAACAATTATTTATGGGTAACTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACCTCTGGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACGTTCTTAAGAACTTAGTTTCTGGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTTCAAGAATAAGATGTACATCGGAAAAGGTTATCTGAGTGATGATCTGTTTAAATTAAATGTACTCACAGTTGTACCCAAAAGTATTAATAATAATAAAATATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTCAACTTCAATTCTTTGTGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA

Coding sequence (CDS)

ATGACTTCAACAAACTTTAATTCAGTTCCTGTAACTGGTGTTGCTCATGGAGAGAAACCTGAAAAATTTGGTGGTGTTGATTTCAATCGTTGGCAACAAAAAATGTTGTTCTATCTCACCACTTTAAATTTGGCAAAGTTTCTCAAAGAGGATGCTCCCATTTTACCTGAGGGAGAAACTGACAAAGAAAAGCAACTTGCAGTAGATGCATGGAAACATGCAGAATACCTTTGCAAGAATTACATTCTAAATGGATTGGACAACACGCTGTGCAATGTGTATAGTAGTGTTGATTCAGCAAAAAATCTCTGGACTTCATTAGAGAAGAAGTACAAAACTGAAGTTGCTGGTACAAAGAAATTTATCGTTGGAAAATTTCTAGATTACAAAATGGTGAACTCCAAAACTGTAATCAGTCAGGTTCAGGAAATCCAGGTAATCTTACATGATATACATGCTGAGAATATGACTTTGAGTGAGTCTTTTCAGGTAGCATCAATAATTGAAAAATTGCCACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAGCTTGAGGAACTAGTAGTTCGACTTGGGATTGAGGAGAATAATAGAAAGGTAGAAAAGTGTATTGTAGATAGTACAGTAGATCCCAAGGCCAACATTGTGGAAAATAAACCACACACTAACAAGAAAAGGAAACTTTCTGATGAATGTTCAAATAAAAAACCGCGATTCACGAAAAAGTTCAATGGCAAGTGCTTCAACTGCAACAAAATGGAACATGAATCTAAGGATTGTCGTAAGCCAAAGAACTTTCAGAAAAAACATGCTCAAGCTCATATCACAGAAGTTGATGAAGTATCAGATGATGTTGTAGATATTGACCTTTGTGCAGTCATTTCGGAGTGCAACATGGTGGGCAATTCCAAGGAATGGTGGGTAGACACTGATGCTACTCGTCATATTTGTACCAACAAGAATATGTTCACTTCATATGTGTCAGTCTCTAATGGAGAACAATTATTTATGGGTAACTCCTCTACGTCAAAGGTCGAGGGACAAGGAAAAGTAATTCTTAAGATGACCTCTGGGAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACGTTCTTAAGAACTTAGTTTCTGGTTCATTACTTAGTAAGAATGGCTTTAAGTTGGTCTTTGTATCTGATAAATTTGTACTTTTCAAGAATAAGATGTACATCGGAAAAGGTTATCTGAGTGATGATCTGTTTAAATTAAATGTACTCACAGTTGTACCCAAAAGTATTAATAATAATAAAATATCTACTTTTGCTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTCAACTTCAATTCTTTGTGTAGGCTGATTAATATGAACTTGATTCCAAAATTCACTTTTGATACAAATCATAGATGTGAAGTATGTGTGGAATAA

Protein sequence

MTSTNFNSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKFLDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRFTKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVISECNMVGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNVLTVVPKSINNNKISTFAYIVESFVWHGRLGHVNFNSLCRLINMNLIPKFTFDTNHRCEVCVE

Homology

[Close]

BLAST of Cmc06g0173761 vs. NCBI nr
Match: RVW26252.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 675.2 bits (1741), Expect = 4.1e-190
Identity = 333/483 (68.94%), Postives = 408/483 (84.47%), Query Frame = 0


Query: 7   NSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQL 66
           ++VP   + HGEKPEKF G +F RWQQKMLFYLTTLNLA+FL E+ PIL EGET+KEK  
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 64

Query: 67  AVDAWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKF 126
           AVDAWKH ++LC+NY+LNGLDNTL NVY S+  AK LW SL+KKYKTE AG KKFIVGKF
Sbjct: 65  AVDAWKHFDFLCRNYVLNGLDNTLYNVYCSLKIAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 127 LDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKR 186
           LD+KM++SKTVISQVQE+QVILH+IH+E M+LS+SFQVA++IEKLPP WKDFKNYLKHK 
Sbjct: 125 LDFKMIDSKTVISQVQELQVILHEIHSEGMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKC 184

Query: 187 KEIKLEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRF 246
           KE+ LEEL+VRL IEE+NRK EK   +++++ KAN++E  P TNKKRK  D+  N+    
Sbjct: 185 KEMNLEELIVRLRIEEDNRKSEK-KGNNSMEAKANVIEQGPKTNKKRKHGDQNQNQGSNA 244

Query: 247 TKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVISECNM 306
            KKF GKC+NC K  H+S DCRKPK  ++K  QA++TE D++S+DV +++L AV+SECN+
Sbjct: 245 AKKFKGKCYNCGKTGHKSNDCRKPK--KEKKPQANVTEFDKLSNDVFEMNLSAVVSECNI 304

Query: 307 VGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGK 366
           VGN+KEWWVDT AT HIC+NK MF++Y  V   E+LFMGNSS+SKVEG+GKVILKMTSGK
Sbjct: 305 VGNTKEWWVDTGATCHICSNKWMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMTSGK 364

Query: 367 ELTLNNVLHVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNV 426
           ELTLN+VLHVPD+ KNLVSGSLLSKNGFKLVFVSDKFVL KN+M++GKGYLSD LFK+NV
Sbjct: 365 ELTLNDVLHVPDIHKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 424

Query: 427 LTVVPKSINNNKISTFAYIVESF-VWHGRLGHVNFNSLCRLINMNLIPKFTFDTNHRCEV 486
           +TVVPKSINNNKI + AY++ES  +WHGRLGHVN+++L RLI+++ +PKF  DTNH+CE 
Sbjct: 425 MTVVPKSINNNKIDSSAYLLESSNIWHGRLGHVNYDTLRRLIHLDYLPKFNIDTNHKCET 484

Query: 487 CVE 489
           CVE
Sbjct: 485 CVE 484

[Close]

BLAST of Cmc06g0173761 vs. NCBI nr
Match: RVW83338.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 620.9 bits (1600), Expect = 9.2e-174
Identity = 308/447 (68.90%), Postives = 379/447 (84.79%), Query Frame = 0


Query: 7   NSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQL 66
           ++VP   + HGEKPEKF G +F RWQQKMLFYLTTLNLA+FL E+ PIL EGET+KEK  
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 64

Query: 67  AVDAWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKF 126
           AVDAWKH+++LC+NY+LNGLDNTL NVY S+ +AK LW SL+KKYKTE AG KKFIVGKF
Sbjct: 65  AVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 127 LDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKR 186
           LD+KM++SK VISQVQE+QVILH+IH++ M+LS+SFQVA++IEKLPP WKDFKNYLKHKR
Sbjct: 125 LDFKMIDSKIVISQVQELQVILHEIHSKGMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKR 184

Query: 187 KEIKLEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRF 246
           KE+ LEEL+VRL IEE+NRK EK   +++++ KAN++E  P TNKKRK  D+  N+    
Sbjct: 185 KEMNLEELIVRLRIEEDNRKSEK-KRNNSMEAKANVIEQGPKTNKKRKHGDQNQNQGSNA 244

Query: 247 TKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVISECNM 306
            KKF GKC+NC K  H+S DCRKPK  ++K  QA++TE D++S+DV +++L AV+SECN+
Sbjct: 245 AKKFKGKCYNCGKTGHKSNDCRKPK--KEKKPQANVTEFDKLSNDVFEMNLSAVVSECNI 304

Query: 307 VGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGK 366
           VGN+KEWWVDT ATRHIC+NK MF++Y  V   E+LFMGNSS+SKVEG+GKVILKMTSGK
Sbjct: 305 VGNTKEWWVDTGATRHICSNKWMFSTYKLVEQNEELFMGNSSSSKVEGRGKVILKMTSGK 364

Query: 367 ELTLNNVLHVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNV 426
           ELTLN+VLH+PD+ KNLVSGSLLSKN FKLVFVSDKFVL KN+M++GKGYLSD LFK+NV
Sbjct: 365 ELTLNDVLHMPDIRKNLVSGSLLSKNSFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 424

Query: 427 LTVVPKSINNNKISTFAYIVESF-VWH 453
           +TVVPKSINNNKI + AY++ES  +WH
Sbjct: 425 MTVVPKSINNNKIDSSAYLLESSNIWH 448

[Close]

BLAST of Cmc06g0173761 vs. NCBI nr
Match: CAN66576.1 (hypothetical protein VITISV_016964 [Vitis vinifera])

HSP 1 Score: 620.9 bits (1600), Expect = 9.2e-174
Identity = 309/483 (63.98%), Postives = 378/483 (78.26%), Query Frame = 0


Query: 7   NSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQL 66
           ++VP+  + HGEKPEKF G +F RWQQKMLFYLTTLNLA+FL E+ PIL EGET+KEK  
Sbjct: 198 SNVPIMNLIHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 257

Query: 67  AVDAWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKF 126
            VDAWKH+++LC+NY+LNGLDNTL NVY S+ +AK LW SL+KKYKTE AG KKFIVGKF
Sbjct: 258 VVDAWKHSDFLCRNYMLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGIKKFIVGKF 317

Query: 127 LDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKR 186
           LD+KM++SKTVISQVQE+QVILH+IH+E M+ S+SFQVA++IEKLPP WKDFKNYLKHKR
Sbjct: 318 LDFKMIDSKTVISQVQELQVILHEIHSEGMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKR 377

Query: 187 KEIKLEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRF 246
           KE+ LEEL+VRL IEE+NRK EK   +++++ KAN++E  P TNKKRK  D+  N++   
Sbjct: 378 KEMNLEELIVRLRIEEDNRKSEK-KGNNSMEAKANVIEQGPKTNKKRKHGDQNQNQESNV 437

Query: 247 TKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVISECNM 306
            KKF GKC+NC K  H+S D R                                      
Sbjct: 438 AKKFKGKCYNCGKTGHKSNDYR-------------------------------------- 497

Query: 307 VGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGK 366
             N+KEWWVDT ATRHIC+NK MF++Y  V   E+LFMGNSS+SK+EG+GKVILKMTSGK
Sbjct: 498 --NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGK 557

Query: 367 ELTLNNVLHVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNV 426
           ELTLN+VLHVPD+ KNLVSGSLLSKNGFKLVFVSDKFVL KN+M++GKGYLSD LFK+NV
Sbjct: 558 ELTLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 617

Query: 427 LTVVPKSINNNKISTFAYIVESF-VWHGRLGHVNFNSLCRLINMNLIPKFTFDTNHRCEV 486
           +TVVPKSINNNKI + AY+++S  +WHGRLGHVN+++LCRLI+++ +PKF  D NH+CE 
Sbjct: 618 MTVVPKSINNNKIDSSAYLLKSSNIWHGRLGHVNYDTLCRLIHLDYLPKFNIDPNHKCET 639

Query: 487 CVE 489
           CVE
Sbjct: 678 CVE 639

[Close]

BLAST of Cmc06g0173761 vs. NCBI nr
Match: KAA0042920.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 618.6 bits (1594), Expect = 4.5e-173
Identity = 319/386 (82.64%), Postives = 331/386 (85.75%), Query Frame = 0


Query: 35  MLFYLTTLNLAKFLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDNTLCNVY 94
           MLFYLTTLNLAKFLKEDAPIL EGETDKEKQLAVDAWKHA YLCKNY LNGLDNTL NVY
Sbjct: 1   MLFYLTTLNLAKFLKEDAPILLEGETDKEKQLAVDAWKHAGYLCKNYTLNGLDNTLYNVY 60

Query: 95  SSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKFLDYKMVNSKTVISQVQEIQVILHDIHAE 154
           SSVDS KNLWTSLEKKY+ EVAG KKFIVGKFLDYKMV+SKT                  
Sbjct: 61  SSVDSTKNLWTSLEKKYQIEVAGVKKFIVGKFLDYKMVDSKT------------------ 120

Query: 155 NMTLSESFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKVEKCIVDS 214
                    VASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRK EKCI+DS
Sbjct: 121 ---------VASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKAEKCIIDS 180

Query: 215 TVDPKANIVENKPHTNKKRKLSDECSNKKPRFTKKFNGKCFNCNKMEHESKDCRKPKNFQ 274
            +DPKANIVEN+PH+NKKRK   E SNKKPRFTKK N KCFNCNKM H+SKD  KPKNFQ
Sbjct: 181 RIDPKANIVENRPHSNKKRKFFGEGSNKKPRFTKKLNDKCFNCNKMGHQSKDYHKPKNFQ 240

Query: 275 KKHAQAHITEVDEVSDDVVDIDLCAVISECNMVGNSKEWWVDTDATRHICTNKNMFTSYV 334
           KKH QAHITEVDEVSD VVDIDLCAVISECNMVGNSKEWWVDT ATRHIC NKNMFTSYV
Sbjct: 241 KKHVQAHITEVDEVSDGVVDIDLCAVISECNMVGNSKEWWVDTGATRHICANKNMFTSYV 300

Query: 335 SVSNGEQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDVLKNLVSGSLLSKNGF 394
           SVSNGEQLFMGNS TSKV+ QGKVILKMTS KELTLNNVLHVPD+ KNLVSGSLLSKNGF
Sbjct: 301 SVSNGEQLFMGNSFTSKVKAQGKVILKMTSRKELTLNNVLHVPDIRKNLVSGSLLSKNGF 359

Query: 395 KLVFVSDKFVLFKNKMYIGKGYLSDD 421
           KLVFVSDKFV  KN+MYIG+GYLSD+
Sbjct: 361 KLVFVSDKFVFSKNEMYIGRGYLSDE 359

[Close]

BLAST of Cmc06g0173761 vs. NCBI nr
Match: RVW84499.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 614.4 bits (1583), Expect = 8.6e-172
Identity = 304/433 (70.21%), Postives = 371/433 (85.68%), Query Frame = 0


Query: 7   NSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQL 66
           ++VP   + HGEKPEKF G +F RWQQKMLFYLTTLNLA+FL E+ PIL EGET+KEK +
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVV 64

Query: 67  AVDAWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKF 126
           AVDAWKH+++LC+NY+LNGLDNTL NVY S+ +AK LW SL+KKYKTE AG KKFIVGKF
Sbjct: 65  AVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 127 LDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKR 186
           LD+KM++SKTVISQVQE+QVILH+IH+E M+LS+SFQVA++IEKLPP WKDFKNYLKHKR
Sbjct: 125 LDFKMIDSKTVISQVQELQVILHEIHSEGMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKR 184

Query: 187 KEIKLEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRF 246
           KE+ LEEL+VRL IEE+NRK EK   +++++ KAN++E  P TNKKRK  D+  N+    
Sbjct: 185 KEMNLEELIVRLRIEEDNRKSEK-RGNNSMEAKANVIEQGPKTNKKRKHGDQNQNQGSNA 244

Query: 247 TKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVISECNM 306
            KKF GKC+NC K  H+S DCRKPK  ++K  QA++TE D++S+DV +++L  V+SECN+
Sbjct: 245 AKKFKGKCYNCGKTGHKSNDCRKPK--KEKKPQANVTEFDKLSNDVSEMNLSDVVSECNI 304

Query: 307 VGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGK 366
           VGN+KEWWVDT ATRHIC+NK MF++Y  V   E+LFMGNSS+SKVEG+GKVILKMTSGK
Sbjct: 305 VGNTKEWWVDTGATRHICSNKLMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMTSGK 364

Query: 367 ELTLNNVLHVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNV 426
           ELTLN+VLHVPD+ KNLVSGSLLSKNGFKLVFVSDKFVL KN+M++GKGYLSD LFK+NV
Sbjct: 365 ELTLNDVLHVPDIRKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 424

Query: 427 LTVVPKSINNNKI 440
           +TVVPKSINNNK+
Sbjct: 425 MTVVPKSINNNKM 434

[Close]

BLAST of Cmc06g0173761 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-27
Identity = 113/473 (23.89%), Postives = 202/473 (42.71%), Query Frame = 0


Query: 22  KFGGVD-FNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKN 81
           KF G + F+ WQ++M   L    L K L  D        + K   +  + W   +    +
Sbjct: 10  KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVD--------SKKPDTMKAEDWADLDERAAS 69

Query: 82  YILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKFLDYKMVNSKTVISQ 141
            I   L + + N     D+A+ +WT LE  Y ++    K ++  +     M      +S 
Sbjct: 70  AIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSH 129

Query: 142 VQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGI 201
           +     ++  +    + + E  +   ++  LP S+ +    + H +  I+L+++   L +
Sbjct: 130 LNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLL 189

Query: 202 EENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRFTKKFNGKCFNCNKM 261
            E  RK  +    + +         +   N  R        K    +K     C+NCN+ 
Sbjct: 190 NEKMRKKPENQGQALITEGRGRSYQRSSNNYGR---SGARGKSKNRSKSRVRNCYNCNQP 249

Query: 262 EHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVI-----SEC-NMVGNSKEWW 321
            H  +DC  P+   K   +    + D+ +  +V  +   V+      EC ++ G   EW 
Sbjct: 250 GHFKRDCPNPR---KGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWV 309

Query: 322 VDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVL 381
           VDT A+ H    +++F  YV+   G  + MGN+S SK+ G G + +K   G  L L +V 
Sbjct: 310 VDTAASHHATPVRDLFCRYVAGDFG-TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVR 369

Query: 382 HVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNVLTVVPKSI 441
           HVPD+  NL+SG  L ++G++  F + K+ L K  + I KG     L++ N        I
Sbjct: 370 HVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNA------EI 429

Query: 442 NNNKISTFAYIVESFVWHGRLGHVNFNSLCRLINMNLIPKFTFDTNHRCEVCV 488
              +++     +   +WH R+GH++   L  L   +LI      T   C+ C+
Sbjct: 430 CQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCL 461

[Close]

BLAST of Cmc06g0173761 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-11
Identity = 109/515 (21.17%), Postives = 203/515 (39.42%), Query Frame = 0


Query: 1   MTSTNFNSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEG-E 60
           + +TN  +V ++ V       K    ++  W +++        LA FL    P+ P    
Sbjct: 10  LVNTNILNVNMSNVT------KLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIG 69

Query: 61  TDKEKQLAVD--AWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAG 120
           TD   ++  D   W+  + L  + IL  +  ++    S   +A  +W +L K Y      
Sbjct: 70  TDAVPRVNPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANP--- 129

Query: 121 TKKFIVGKFLDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKD 180
                      Y  V     I++  ++ ++          +    QV  ++E LP  +K 
Sbjct: 130 ----------SYGHVTQLRFITRFDQLALL-------GKPMDHDEQVERVLENLPDDYKP 189

Query: 181 FKNYLKHKRKEIKLEELVVRLGIEENNRKVEKCIVDS--TVDPKANIVENKPHTNKKRKL 240
             + +  K     L E+  RL     NR+ +   ++S   V   AN+V ++ +TN  R  
Sbjct: 190 VIDQIAAKDTPPSLTEIHERL----INRESKLLALNSAEVVPITANVVTHR-NTNTNRNQ 249

Query: 241 SDECSNKK---------------------PRFTKKFNGKCFNCNKMEHESKDCRKPKNFQ 300
           ++   N+                       R  K + G+C  C+   H +K C +   FQ
Sbjct: 250 NNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQ 309

Query: 301 KKHAQAHITEVDEVSDDVVDIDLCAVISECNMVGNSKEWWVDTDATRHICTNKNMFTSYV 360
               Q   T          ++ +       N   N+  W +D+ AT HI ++ N  + + 
Sbjct: 310 STTNQQQSTSPFTPWQPRANLAV-------NSPYNANNWLLDSGATHHITSDFNNLSFHQ 369

Query: 361 SVSNGEQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDVLKNLVS-GSLLSKNG 420
             + G+ + + + ST  +   G   L  TS + L LN VL+VP++ KNL+S   L + N 
Sbjct: 370 PYTGGDDVMIADGSTIPITHTGSASLP-TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNR 429

Query: 421 FKLVFVSDKFVL--FKNKMYIGKGYLSDDLFKLNVLTVVPKSINNNKISTFAYIVESFVW 480
             + F    F +      + + +G   D+L++  + +    S+  +  S   +      W
Sbjct: 430 VSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATH----SSW 479

Query: 481 HGRLGHVNFNSLCRLINMNLIPKFTFDTNHRCEVC 487
           H RLGH +   L  +I+ + +P    + +H+   C
Sbjct: 490 HSRLGHPSLAILNSVISNHSLP--VLNPSHKLLSC 479

[Close]

BLAST of Cmc06g0173761 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.9e-10
Identity = 96/465 (20.65%), Postives = 179/465 (38.49%), Query Frame = 0


Query: 22  KFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEG-ETDKEKQLAVD--AWKHAEYLC 81
           K    ++  W +++        LA FL     + P    TD   ++  D   WK  + L 
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLI 84

Query: 82  KNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKFLDYKMVNSKTVI 141
            + +L  +  ++    S   +A  +W +L K Y     G    +  +   +    +KT+ 
Sbjct: 85  YSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTK-GTKTID 144

Query: 142 SQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRL 201
             +Q +      +      +    QV  ++E LP  +K   + +  K     L E+  RL
Sbjct: 145 DYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERL 204

Query: 202 GIEENNRKVEKCIVDSTVDP---------------------KANIVENKPHTNKKRKLSD 261
               N+      +  +TV P                     + N  +N+ + N  +    
Sbjct: 205 ---LNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNNNNSKPWQQ 264

Query: 262 ECSNKKP--RFTKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDI 321
             +N  P    +K + GKC  C    H +K C + ++F                    ++
Sbjct: 265 SSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRANL 324

Query: 322 DLCAVISECNMVGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQ 381
            L +  S       S  W +D+ AT HI ++ N  + +   + G+ + + + ST  +   
Sbjct: 325 ALGSPYS-------SNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHT 384

Query: 382 GKVILKMTSGKELTLNNVLHVPDVLKNLVS-GSLLSKNGFKLVFVSDKFVL--FKNKMYI 441
           G   L  T  + L L+N+L+VP++ KNL+S   L + NG  + F    F +      + +
Sbjct: 385 GSTSLS-TKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPL 444

Query: 442 GKGYLSDDLFKLNVLTVVPKSINNNKISTFAYIVESFVWHGRLGH 458
            +G   D+L++  + +  P S+  +  S   +      WH RLGH
Sbjct: 445 LQGKTKDELYEWPIASSQPVSLFASPSSKATH----SSWHARLGH 473

[Close]

BLAST of Cmc06g0173761 vs. ExPASy TrEMBL
Match: A0A438CSS8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_823 PE=4 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 2.0e-190
Identity = 333/483 (68.94%), Postives = 408/483 (84.47%), Query Frame = 0


Query: 7   NSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQL 66
           ++VP   + HGEKPEKF G +F RWQQKMLFYLTTLNLA+FL E+ PIL EGET+KEK  
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 64

Query: 67  AVDAWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKF 126
           AVDAWKH ++LC+NY+LNGLDNTL NVY S+  AK LW SL+KKYKTE AG KKFIVGKF
Sbjct: 65  AVDAWKHFDFLCRNYVLNGLDNTLYNVYCSLKIAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 127 LDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKR 186
           LD+KM++SKTVISQVQE+QVILH+IH+E M+LS+SFQVA++IEKLPP WKDFKNYLKHK 
Sbjct: 125 LDFKMIDSKTVISQVQELQVILHEIHSEGMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKC 184

Query: 187 KEIKLEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRF 246
           KE+ LEEL+VRL IEE+NRK EK   +++++ KAN++E  P TNKKRK  D+  N+    
Sbjct: 185 KEMNLEELIVRLRIEEDNRKSEK-KGNNSMEAKANVIEQGPKTNKKRKHGDQNQNQGSNA 244

Query: 247 TKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVISECNM 306
            KKF GKC+NC K  H+S DCRKPK  ++K  QA++TE D++S+DV +++L AV+SECN+
Sbjct: 245 AKKFKGKCYNCGKTGHKSNDCRKPK--KEKKPQANVTEFDKLSNDVFEMNLSAVVSECNI 304

Query: 307 VGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGK 366
           VGN+KEWWVDT AT HIC+NK MF++Y  V   E+LFMGNSS+SKVEG+GKVILKMTSGK
Sbjct: 305 VGNTKEWWVDTGATCHICSNKWMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMTSGK 364

Query: 367 ELTLNNVLHVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNV 426
           ELTLN+VLHVPD+ KNLVSGSLLSKNGFKLVFVSDKFVL KN+M++GKGYLSD LFK+NV
Sbjct: 365 ELTLNDVLHVPDIHKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 424

Query: 427 LTVVPKSINNNKISTFAYIVESF-VWHGRLGHVNFNSLCRLINMNLIPKFTFDTNHRCEV 486
           +TVVPKSINNNKI + AY++ES  +WHGRLGHVN+++L RLI+++ +PKF  DTNH+CE 
Sbjct: 425 MTVVPKSINNNKIDSSAYLLESSNIWHGRLGHVNYDTLRRLIHLDYLPKFNIDTNHKCET 484

Query: 487 CVE 489
           CVE
Sbjct: 485 CVE 484

[Close]

BLAST of Cmc06g0173761 vs. ExPASy TrEMBL
Match: A5CBN2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1)

HSP 1 Score: 620.9 bits (1600), Expect = 4.4e-174
Identity = 309/483 (63.98%), Postives = 378/483 (78.26%), Query Frame = 0


Query: 7   NSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQL 66
           ++VP+  + HGEKPEKF G +F RWQQKMLFYLTTLNLA+FL E+ PIL EGET+KEK  
Sbjct: 198 SNVPIMNLIHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 257

Query: 67  AVDAWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKF 126
            VDAWKH+++LC+NY+LNGLDNTL NVY S+ +AK LW SL+KKYKTE AG KKFIVGKF
Sbjct: 258 VVDAWKHSDFLCRNYMLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGIKKFIVGKF 317

Query: 127 LDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKR 186
           LD+KM++SKTVISQVQE+QVILH+IH+E M+ S+SFQVA++IEKLPP WKDFKNYLKHKR
Sbjct: 318 LDFKMIDSKTVISQVQELQVILHEIHSEGMSFSDSFQVAAVIEKLPPLWKDFKNYLKHKR 377

Query: 187 KEIKLEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRF 246
           KE+ LEEL+VRL IEE+NRK EK   +++++ KAN++E  P TNKKRK  D+  N++   
Sbjct: 378 KEMNLEELIVRLRIEEDNRKSEK-KGNNSMEAKANVIEQGPKTNKKRKHGDQNQNQESNV 437

Query: 247 TKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVISECNM 306
            KKF GKC+NC K  H+S D R                                      
Sbjct: 438 AKKFKGKCYNCGKTGHKSNDYR-------------------------------------- 497

Query: 307 VGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGK 366
             N+KEWWVDT ATRHIC+NK MF++Y  V   E+LFMGNSS+SK+EG+GKVILKMTSGK
Sbjct: 498 --NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGK 557

Query: 367 ELTLNNVLHVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNV 426
           ELTLN+VLHVPD+ KNLVSGSLLSKNGFKLVFVSDKFVL KN+M++GKGYLSD LFK+NV
Sbjct: 558 ELTLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 617

Query: 427 LTVVPKSINNNKISTFAYIVESF-VWHGRLGHVNFNSLCRLINMNLIPKFTFDTNHRCEV 486
           +TVVPKSINNNKI + AY+++S  +WHGRLGHVN+++LCRLI+++ +PKF  D NH+CE 
Sbjct: 618 MTVVPKSINNNKIDSSAYLLKSSNIWHGRLGHVNYDTLCRLIHLDYLPKFNIDPNHKCET 639

Query: 487 CVE 489
           CVE
Sbjct: 678 CVE 639

[Close]

BLAST of Cmc06g0173761 vs. ExPASy TrEMBL
Match: A0A438HFY7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3939 PE=4 SV=1)

HSP 1 Score: 620.9 bits (1600), Expect = 4.4e-174
Identity = 308/447 (68.90%), Postives = 379/447 (84.79%), Query Frame = 0


Query: 7   NSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQL 66
           ++VP   + HGEKPEKF G +F RWQQKMLFYLTTLNLA+FL E+ PIL EGET+KEK  
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVA 64

Query: 67  AVDAWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKF 126
           AVDAWKH+++LC+NY+LNGLDNTL NVY S+ +AK LW SL+KKYKTE AG KKFIVGKF
Sbjct: 65  AVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 127 LDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKR 186
           LD+KM++SK VISQVQE+QVILH+IH++ M+LS+SFQVA++IEKLPP WKDFKNYLKHKR
Sbjct: 125 LDFKMIDSKIVISQVQELQVILHEIHSKGMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKR 184

Query: 187 KEIKLEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRF 246
           KE+ LEEL+VRL IEE+NRK EK   +++++ KAN++E  P TNKKRK  D+  N+    
Sbjct: 185 KEMNLEELIVRLRIEEDNRKSEK-KRNNSMEAKANVIEQGPKTNKKRKHGDQNQNQGSNA 244

Query: 247 TKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVISECNM 306
            KKF GKC+NC K  H+S DCRKPK  ++K  QA++TE D++S+DV +++L AV+SECN+
Sbjct: 245 AKKFKGKCYNCGKTGHKSNDCRKPK--KEKKPQANVTEFDKLSNDVFEMNLSAVVSECNI 304

Query: 307 VGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGK 366
           VGN+KEWWVDT ATRHIC+NK MF++Y  V   E+LFMGNSS+SKVEG+GKVILKMTSGK
Sbjct: 305 VGNTKEWWVDTGATRHICSNKWMFSTYKLVEQNEELFMGNSSSSKVEGRGKVILKMTSGK 364

Query: 367 ELTLNNVLHVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNV 426
           ELTLN+VLH+PD+ KNLVSGSLLSKN FKLVFVSDKFVL KN+M++GKGYLSD LFK+NV
Sbjct: 365 ELTLNDVLHMPDIRKNLVSGSLLSKNSFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 424

Query: 427 LTVVPKSINNNKISTFAYIVESF-VWH 453
           +TVVPKSINNNKI + AY++ES  +WH
Sbjct: 425 MTVVPKSINNNKIDSSAYLLESSNIWH 448

[Close]

BLAST of Cmc06g0173761 vs. ExPASy TrEMBL
Match: A0A5A7THY2 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001460 PE=4 SV=1)

HSP 1 Score: 618.6 bits (1594), Expect = 2.2e-173
Identity = 319/386 (82.64%), Postives = 331/386 (85.75%), Query Frame = 0


Query: 35  MLFYLTTLNLAKFLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDNTLCNVY 94
           MLFYLTTLNLAKFLKEDAPIL EGETDKEKQLAVDAWKHA YLCKNY LNGLDNTL NVY
Sbjct: 1   MLFYLTTLNLAKFLKEDAPILLEGETDKEKQLAVDAWKHAGYLCKNYTLNGLDNTLYNVY 60

Query: 95  SSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKFLDYKMVNSKTVISQVQEIQVILHDIHAE 154
           SSVDS KNLWTSLEKKY+ EVAG KKFIVGKFLDYKMV+SKT                  
Sbjct: 61  SSVDSTKNLWTSLEKKYQIEVAGVKKFIVGKFLDYKMVDSKT------------------ 120

Query: 155 NMTLSESFQVASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKVEKCIVDS 214
                    VASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRK EKCI+DS
Sbjct: 121 ---------VASIIEKLPPSWKDFKNYLKHKRKEIKLEELVVRLGIEENNRKAEKCIIDS 180

Query: 215 TVDPKANIVENKPHTNKKRKLSDECSNKKPRFTKKFNGKCFNCNKMEHESKDCRKPKNFQ 274
            +DPKANIVEN+PH+NKKRK   E SNKKPRFTKK N KCFNCNKM H+SKD  KPKNFQ
Sbjct: 181 RIDPKANIVENRPHSNKKRKFFGEGSNKKPRFTKKLNDKCFNCNKMGHQSKDYHKPKNFQ 240

Query: 275 KKHAQAHITEVDEVSDDVVDIDLCAVISECNMVGNSKEWWVDTDATRHICTNKNMFTSYV 334
           KKH QAHITEVDEVSD VVDIDLCAVISECNMVGNSKEWWVDT ATRHIC NKNMFTSYV
Sbjct: 241 KKHVQAHITEVDEVSDGVVDIDLCAVISECNMVGNSKEWWVDTGATRHICANKNMFTSYV 300

Query: 335 SVSNGEQLFMGNSSTSKVEGQGKVILKMTSGKELTLNNVLHVPDVLKNLVSGSLLSKNGF 394
           SVSNGEQLFMGNS TSKV+ QGKVILKMTS KELTLNNVLHVPD+ KNLVSGSLLSKNGF
Sbjct: 301 SVSNGEQLFMGNSFTSKVKAQGKVILKMTSRKELTLNNVLHVPDIRKNLVSGSLLSKNGF 359

Query: 395 KLVFVSDKFVLFKNKMYIGKGYLSDD 421
           KLVFVSDKFV  KN+MYIG+GYLSD+
Sbjct: 361 KLVFVSDKFVFSKNEMYIGRGYLSDE 359

[Close]

BLAST of Cmc06g0173761 vs. ExPASy TrEMBL
Match: A0A438HJC7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1271 PE=4 SV=1)

HSP 1 Score: 614.4 bits (1583), Expect = 4.2e-172
Identity = 304/433 (70.21%), Postives = 371/433 (85.68%), Query Frame = 0


Query: 7   NSVPVTGVAHGEKPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEGETDKEKQL 66
           ++VP   + HGEKPEKF G +F RWQQKMLFYLTTLNLA+FL E+ PIL EGET+KEK +
Sbjct: 5   SNVPTMNLTHGEKPEKFNGNEFKRWQQKMLFYLTTLNLARFLHEECPILEEGETNKEKVV 64

Query: 67  AVDAWKHAEYLCKNYILNGLDNTLCNVYSSVDSAKNLWTSLEKKYKTEVAGTKKFIVGKF 126
           AVDAWKH+++LC+NY+LNGLDNTL NVY S+ +AK LW SL+KKYKTE AG KKFIVGKF
Sbjct: 65  AVDAWKHSDFLCRNYVLNGLDNTLYNVYCSLKTAKELWDSLDKKYKTEDAGMKKFIVGKF 124

Query: 127 LDYKMVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKR 186
           LD+KM++SKTVISQVQE+QVILH+IH+E M+LS+SFQVA++IEKLPP WKDFKNYLKHKR
Sbjct: 125 LDFKMIDSKTVISQVQELQVILHEIHSEGMSLSDSFQVAAVIEKLPPLWKDFKNYLKHKR 184

Query: 187 KEIKLEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPHTNKKRKLSDECSNKKPRF 246
           KE+ LEEL+VRL IEE+NRK EK   +++++ KAN++E  P TNKKRK  D+  N+    
Sbjct: 185 KEMNLEELIVRLRIEEDNRKSEK-RGNNSMEAKANVIEQGPKTNKKRKHGDQNQNQGSNA 244

Query: 247 TKKFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAHITEVDEVSDDVVDIDLCAVISECNM 306
            KKF GKC+NC K  H+S DCRKPK  ++K  QA++TE D++S+DV +++L  V+SECN+
Sbjct: 245 AKKFKGKCYNCGKTGHKSNDCRKPK--KEKKPQANVTEFDKLSNDVSEMNLSDVVSECNI 304

Query: 307 VGNSKEWWVDTDATRHICTNKNMFTSYVSVSNGEQLFMGNSSTSKVEGQGKVILKMTSGK 366
           VGN+KEWWVDT ATRHIC+NK MF++Y  V   E+LFMGNSS+SKVEG+GKVILKMTSGK
Sbjct: 305 VGNTKEWWVDTGATRHICSNKLMFSTYKPVEQNEELFMGNSSSSKVEGRGKVILKMTSGK 364

Query: 367 ELTLNNVLHVPDVLKNLVSGSLLSKNGFKLVFVSDKFVLFKNKMYIGKGYLSDDLFKLNV 426
           ELTLN+VLHVPD+ KNLVSGSLLSKNGFKLVFVSDKFVL KN+M++GKGYLSD LFK+NV
Sbjct: 365 ELTLNDVLHVPDIRKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGKGYLSDGLFKMNV 424

Query: 427 LTVVPKSINNNKI 440
           +TVVPKSINNNK+
Sbjct: 425 MTVVPKSINNNKM 434

[Close]

BLAST of Cmc06g0173761 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-16
Identity = 72/273 (26.37%), Postives = 125/273 (45.79%), Query Frame = 0


Query: 19  KPEKFGGVDFNRWQQKMLFYLTTLNLAKFLKEDAPILPEG---ETDKEKQLAVDA----W 78
           K  +F G  +  W  +M  +L  L L   L E  P +      ET+  +    DA    W
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKW 253

Query: 79  KHAEYLCKNYILNGLDNTLCNVYS-SVDSAKNLWTSLEKKYKTEVAGTKKFIVGKFLDYK 138
              +YLC  +++N L + L   YS     AK LW  L+  Y+ + + +K+  V K+++++
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313

Query: 139 MVNSKTVISQVQEIQVILHDIHAENMTLSESFQVASIIEKLPPSWKDFKNYLKHKRKEIK 198
           MV  + ++ QVQ    I   I +  M L E+F V++II K PPSW+ F   L  + + + 
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRLM-EEEYLP 373

Query: 199 LEELVVRLGIEENNRKVEKCIVDSTVDPKANIVENKPH--TNKKRKLSDECSNKKPRFTK 258
           +  L+ R+  EE   +     V       ++ +E  P   T  +   S     K+P   +
Sbjct: 374 VWMLMERVKAEEELLRNGAKGVTYRPATGSSQMERTPSLGTTHRGSQSVGWKRKEPERDE 433

Query: 259 KFNGKCFNCNKMEHESKDCRKPKNFQKKHAQAH 282
           +    C NC +  H +K C   K+ ++   +++
Sbjct: 434 RVIIVCDNCGRKGHLAKHCWGSKSDERASGKSN 465

The following BLAST results are available for this feature:

BLAST of Cmc06g0173761 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW26252.1	4.1e-190	68.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW83338.1	9.2e-174	68.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN66576.1	9.2e-174	63.98	hypothetical protein VITISV_016964 [Vitis vinifera]	[more]
KAA0042920.1	4.5e-173	82.64	pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis ...	[more]
RVW84499.1	8.6e-172	70.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc06g0173761 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.1e-27	23.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.1e-11	21.17	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.9e-10	20.65	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc06g0173761 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438CSS8	2.0e-190	68.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5CBN2	4.4e-174	63.98	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1	[more]
A0A438HFY7	4.4e-174	68.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A5A7THY2	2.2e-173	82.64	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G0014...	[more]
A0A438HJC7	4.2e-172	70.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Cmc06g0173761 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	1.3e-16	26.37	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 432..487 e-value: 2.2E-12 score: 46.6
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 71..206 e-value: 1.3E-18 score: 67.1
None	No IPR available	PANTHER	PTHR47592:SF11	SUBFAMILY NOT NAMED	coord: 12..408
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 12..408
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 253..269 score: 8.696716
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 243..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0173761.1	Cmc06g0173761.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding