Cmc06g0173741 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0173741
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr06: 30647784 .. 30650598 (+)
RNA-Seq Expression	Cmc06g0173741
Synteny	Cmc06g0173741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATGAAACAAACAACCAAAGCTCCGAACTGCCAAAAACAACTTCTGAAATAAAGAGGAGCAGGGCCAAACAAGAACCTTGCTTCAACATGCCTCCTAAAGTCCCTTTGAAACTTGAAAGAATGACTAAATCTCTATTAGGCTAACCAAGAACCTGCAGATGGCCAAACTATTGAAGTATCCGTCAAAAACCTCGTGATCCACTATTCAAAATTCAGAGATAATTGACTGATGAAGCAGAGAACAAATCTACTTTCAAGAACTCAACCCAAAGTTATTCCACATTCTTCAACAAAAGACTTCAAATGCTCTAGAACTTCACAGTGCTGTGATTGAGAGGAAATTTGGGGACCTGCTTTTCAAAATTTACATCTTCCTTAATCTGGAACAGGGCATTTAAATCAGATTCTAAAAGGTCCTTTAGTAATTGATCCTTGCCCTAGCAACCCCTCGGTTTTGTATGAATGGATGGTTTTTCCTTTCTTTTCTTTCCTTTTTTTGTTATGAAACAATAAAAAACCCGAGAGAAAATCCCCTTCCAGAGCAGTTGCAGATTCTCTTGTCGCTATCCAATATTGTTGATTCTCGACAATTGGAAGAACTTTTGGTGGTTAGCATTCTTTGGGAGGGGGATGTCATCTTAAGTGGTATTGTCTTCTTTTTCCCTTGAATACAGCCAAGATTCTTATTTAAAGAACAAACAAAAGAATGCCCTTCAAGTCATTATAATCATCAAAAGACTATAACTACAACAAATTTATTGTGTTTATAACAGCAAGAAAGAAGCTTTTAGAAAAGACTCCAAAGAAGAAAGTTTGTTACAATCATCTTCAGAAGATCCTTCGTTCCATTGATTCTTCAAAGTATTATCAATGAAATTTCATATTGCCTATAAAAAAGAGACGTGGCCGTAGAGATTTCAAGCTCTTCCTCTTACTACCTATGGACGTCCACAGGATCATCACCTATTTAATCACATAGTACCAATGATAGCCATATCATCATCTTAATCGTAATAGTAGGTTTCCATTTTCTACAAATTAATAAACTCAACACAACAAACCATTTATTTCGCCATTCCCCCGGAGGATCGAAGATCCCATGACAAACAACCAAAAACATAAGATATCCCTTTACATAGGCTGGAGATCAAAACATCCTAGAGATATATTTAATATTAATCAATATATATAATATATATTGTTTAAATCGTTCTCACTGTGTCTACATGAAATAAAGTTATTGTCTGAACAATTACTTAAAAAAAGAATCAATTGTCAATCCTTATTGTATTTTCTTCCCGTTTCTTCCCCTCTGTTCCCTTTTAGTCCTTCTACCTTTTCTGTAGGGGCTAGTCATTTCACAAACAAGTTACCAGAACATATTCAATAATCATATGTATGCAAGAAAAGAAATCTAAGACATGGGGGCAAAACAACATAGCAAGCAATTTGCAGAAACTTACCAGACCAAATTCAATATTTGTTTGTCCTGAGGCCTATCTTCTCATTCACTGTCATTTCCACCACCGGAGTCACTCCCATCGTTCCGGCTACCAAACGGCCACCATAGTGGCACTCTAAACCTCCTTTCAACACGCCTCGTGCTACTCCTACTGCTTTCTGATCCTGATTCTTCCCCGGAAGATTCATTCCCCTGCATCCGGTTTCCACGCGTTCGATTCTCGTAATCAGAATCATCTATAGGCAACTCGAACCTGCAAACAAGGCATGAATTATGCAATTCAAGCCAAGGCAATAGACAATAATCATGAAATACATGCTTGCAGGGCATCTGCTTAACCTCAATACCTTTTTCAAAATCATCAATGCAAATGGCACACTGATTCATTTCCGAATTCAGAAGGTCCTCAGTAACAGTGATAGTCGAAAGCTTCTCAATTGCCGATTTCGAAGCCGACGGAGTTCCATATCGGTTGGGATCATTGTCAGCCAGCAACTGAATAAGCTGCTCGAGGCCTGGTCCAATGAAGTAATCGCCAACATTTTGAGGCATTGGAACACCAGAGTGGAAAGAATGGCAAGGAATTTCAAACACCACATCGGCACCACTTTCGAAGATGCTCCGTAAATGATTCTGAAGAAAAACAAAAGGATCGTAGGGCTCGGGGTGAACAGAGGAACTGGATTGGGGAGGCGAAGCCAAAGTTCTTGAAAATATACCAGGGTTTTGAAGATCAACAACTGTGGAAGAGGAGAAAACAAGCGGATTGAAACGACGGAAAGGTTGGGGAAGGAAAAAGGACCTGAGATCAAGATTGAGATTGGAATTGGAATTGGAATTGTCGTACTCTTCAAGAAAACCCTCGTGGCAAAGTGGGCAAAGAGGATCAGAGGAAATGGATACAGAAACAGTAATGGCGCGATCACACTGGTGACAAAAGAAAGGCTTGTCAACGGCAAAGGACATGGTGGTGGTGGTGGCCCCCGAAAACAACCGATCAAAATGAAATCCGGAGAGAATAAGAGGAATTAGGAAAGGGGAATTCAAAGAGACGAAAAGAAGAAGGGTGGATTTGATGTTGGGGTCGTCAACTCCATTGGCCGTTGAGAAATGGGAAATCGAGTCTTCTCTCTAAATTCTAATTGTCCTCCTGATCATTCTCGACGACTTTAGAACATTCCAGACTTTTGTCCATTTCTTCCATCCCTTTATTTCATTTTCCATACTTTCCACCCACTAGGTTAGTTTACTTAAAAAGGAAAAATATCCCTCTATGTTCCCAAACTTTATTATACTAGATTAATTTCTAAATTAATAATTATATCCATTTAAATTTTAAACTTTTGTCAACT

mRNA sequence

TCATGAAACAAACAACCAAAGCTCCGAACTGCCAAAAACAACTTCTGAAATAAAGAGGAGCAGGGCCAAACAAGAACCTTGCTTCAACATGCCTCCTAAAGTCCCTTTGAAACTTGAAAGAATGACTAAATCTCTATTAGGCTAACCAAGAACCTGCAGATGGCCAAACTATTGAAGTATCCGTCAAAAACCTCGTGATCCACTATTCAAAATTCAGAGATAATTGACTGATGAAGCAGAGAACAAATCTACTTTCAAGAACTCAACCCAAAGTTATTCCACATTCTTCAACAAAAGACTTCAAATGCTCTAGAACTTCACAGTGCTGTGATTGAGAGGAAATTTGGGGACCTGCTTTTCAAAATTTACATCTTCCTTAATCTGGAACAGGGCATTTAAATCAGATTCTAAAAGGTCCTTTAGTAATTGATCCTTGCCCTAGCAACCCCTCGGTTTTGTATGAATGGATGGTTTTTCCTTTCTTTTCTTTCCTTTTTTTGTTATGAAACAATAAAAAACCCGAGAGAAAATCCCCTTCCAGAGCAGTTGCAGATTCTCTTGTCGCTATCCAATATTGTTGATTCTCGACAATTGGAAGAACTTTTGGTGGTTAGCATTCTTTGGGAGGGGGATGTCATCTTAAGTGCAAGAAAGAAGCTTTTAGAAAAGACTCCAAAGAAGAAAGTTTGTTACAATCATCTTCAGAAGATCCTTCGTTCCATTGATTCTTCAAAGTATTATCAATGAAATTTCATATTGCCTATAAAAAAGAGACGTGGCCGTAGAGATTTCAAGCTCTTCCTCTTACTACCTATGGACGTCCACAGGATCATCACCTATTTAATCACATAGTACCAATGATAGCCATATCATCATCTTAATCGTAATAGTAGGTTTCCATTTTCTACAAATTAATAAACTCAACACAACAAACCATTTATTTCGCCATTCCCCCGGAGGATCGAAGATCCCATGACAAACAACCAAAAACATAAGATATCCCTTTACATAGGCTGGAGATCAAAACATCCTAGAGATATATTTAATATTAATCAATATATATAATATATATTGTTTAAATCGTTCTCACTGTGTCTACATGAAATAAAGTTATTGTCTGAACAATTACTTAAAAAAAGAATCAATTGTCAATCCTTATTGTATTTTCTTCCCGTTTCTTCCCCTCTGTTCCCTTTTAGTCCTTCTACCTTTTCTGTAGGGGCTAGTCATTTCACAAACAAGTTACCAGAACATATTCAATAATCATATGTATGCAAGAAAAGAAATCTAAGACATGGGGGCAAAACAACATAGCAAGCAATTTGCAGAAACTTACCAGACCAAATTCAATATTTGTTTGTCCTGAGGCCTATCTTCTCATTCACTGTCATTTCCACCACCGGAGTCACTCCCATCGTTCCGGCTACCAAACGGCCACCATAGTGGCACTCTAAACCTCCTTTCAACACGCCTCGTGCTACTCCTACTGCTTTCTGATCCTGATTCTTCCCCGGAAGATTCATTCCCCTGCATCCGGTTTCCACGCGTTCGATTCTCGTAATCAGAATCATCTATAGGCAACTCGAACCTGCAAACAAGGCATGAATTATGCAATTCAAGCCAAGGCAATAGACAATAATCATGAAATACATGCTTGCAGGGCATCTGCTTAACCTCAATACCTTTTTCAAAATCATCAATGCAAATGGCACACTGATTCATTTCCGAATTCAGAAGGTCCTCAGTAACAGTGATAGTCGAAAGCTTCTCAATTGCCGATTTCGAAGCCGACGGAGTTCCATATCGGTTGGGATCATTGTCAGCCAGCAACTGAATAAGCTGCTCGAGGCCTGGTCCAATGAAGTAATCGCCAACATTTTGAGGCATTGGAACACCAGAGTGGAAAGAATGGCAAGGAATTTCAAACACCACATCGGCACCACTTTCGAAGATGCTCCGTAAATGATTCTGAAGAAAAACAAAAGGATCGTAGGGCTCGGGGTGAACAGAGGAACTGGATTGGGGAGGCGAAGCCAAAGTTCTTGAAAATATACCAGGGTTTTGAAGATCAACAACTGTGGAAGAGGAGAAAACAAGCGGATTGAAACGACGGAAAGGTTGGGGAAGGAAAAAGGACCTGAGATCAAGATTGAGATTGGAATTGGAATTGGAATTGTCGTACTCTTCAAGAAAACCCTCGTGGCAAAGTGGGCAAAGAGGATCAGAGGAAATGGATACAGAAACAGTAATGGCGCGATCACACTGGTGACAAAAGAAAGGCTTGTCAACGGCAAAGGACATGGTGGTGGTGGTGGCCCCCGAAAACAACCGATCAAAATGAAATCCGGAGAGAATAAGAGGAATTAGGAAAGGGGAATTCAAAGAGACGAAAAGAAGAAGGGTGGATTTGATGTTGGGGTCGTCAACTCCATTGGCCGTTGAGAAATGGGAAATCGAGTCTTCTCTCTAAATTCTAATTGTCCTCCTGATCATTCTCGACGACTTTAGAACATTCCAGACTTTTGTCCATTTCTTCCATCCCTTTATTTCATTTTCCATACTTTCCACCCACTAGGTTAGTTTACTTAAAAAGGAAAAATATCCCTCTATGTTCCCAAACTTTATTATACTAGATTAATTTCTAAATTAATAATTATATCCATTTAAATTTTAAACTTTTGTCAACT

Coding sequence (CDS)

ATGAAATACATGCTTGCAGGGCATCTGCTTAACCTCAATACCTTTTTCAAAATCATCAATGCAAATGGCACACTGATTCATTTCCGAATTCAGAAGGTCCTCAGTAACAGTGATAGTCGAAAGCTTCTCAATTGCCGATTTCGAAGCCGACGGAGTTCCATATCGGTTGGGATCATTGTCAGCCAGCAACTGAATAAGCTGCTCGAGGCCTGGTCCAATGAAGTAATCGCCAACATTTTGAGGCATTGGAACACCAGAGTGGAAAGAATGGCAAGGAATTTCAAACACCACATCGGCACCACTTTCGAAGATGCTCCGTAA

Protein sequence

MKYMLAGHLLNLNTFFKIINANGTLIHFRIQKVLSNSDSRKLLNCRFRSRRSSISVGIIVSQQLNKLLEAWSNEVIANILRHWNTRVERMARNFKHHIGTTFEDAP

Homology

[Close]

BLAST of Cmc06g0173741 vs. NCBI nr
Match: RHN82633.1 (hypothetical protein MtrunA17_Chr1g0211901 [Medicago truncatula])

HSP 1 Score: 68.9 bits (167), Expect = 2.9e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 4  MLAGHLLNLNTFFKIINANGTLIHFRIQKVLSNSDSRKLLNCRFRSRRSSISVGIIVSQQ 63
          ML  HLL+L+TF K+I  N TLI  R Q+ + NS   K+LN  FR RR S++V II+ + 
Sbjct: 23 MLTRHLLHLHTFLKLILTNSTLIQLRAQQRIINSYRWKILNSLFRCRRCSVTVRIILCEL 82

Query: 64 LNKLLEAWSNEVIANI 80
          LN+LLEA + EVIA +
Sbjct: 83 LNQLLEASTEEVIAKV 98

[Close]

BLAST of Cmc06g0173741 vs. NCBI nr
Match: AFK43002.1 (unknown [Medicago truncatula])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 4  MLAGHLLNLNTFFKIINANGTLIHFRIQKVLSNSDSRKLLNCRFRSRRSSISVGIIVSQQ 63
          ML  HL +L+TF K+I  N TLI  R Q+ + NS   K+LN  FR RR S++V II+ + 
Sbjct: 23 MLTRHLPHLHTFLKLILTNSTLIQLRAQQRIINSYRWKILNSLFRCRRCSVTVRIILCEL 82

Query: 64 LNKLLEAWSNEVIANI 80
          LN+LLEA + EVIA +
Sbjct: 83 LNQLLEASTEEVIAKV 98

[Close]

BLAST of Cmc06g0173741 vs. NCBI nr
Match: RDX64944.1 (hypothetical protein CR513_56437, partial [Mucuna pruriens])

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 25/77 (32.47%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 3   YMLAGHLLNLNTFFKIINANGTLIHFRIQKVLSNSDSRKLLNCRFRSRRSSISVGIIVSQ 62
           +M A HL +L T  +++ ANG L+  R+Q+++ + D  ++L+      R +++VG++V +
Sbjct: 58  HMFARHLPHLRTLLELVQANGALVQLRVQQLVVDGDCGEILDGFLGGGRCAVAVGVVVGK 117

Query: 63  QLNKLLEAWSNEVIANI 80
            LN+LL+A + +V+A++
Sbjct: 118 LLNQLLQAGAEKVVAHV 134

[Close]

BLAST of Cmc06g0173741 vs. ExPASy TrEMBL
Match: A0A396K3S9 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr1g0211901 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 4  MLAGHLLNLNTFFKIINANGTLIHFRIQKVLSNSDSRKLLNCRFRSRRSSISVGIIVSQQ 63
          ML  HLL+L+TF K+I  N TLI  R Q+ + NS   K+LN  FR RR S++V II+ + 
Sbjct: 23 MLTRHLLHLHTFLKLILTNSTLIQLRAQQRIINSYRWKILNSLFRCRRCSVTVRIILCEL 82

Query: 64 LNKLLEAWSNEVIANI 80
          LN+LLEA + EVIA +
Sbjct: 83 LNQLLEASTEEVIAKV 98

[Close]

BLAST of Cmc06g0173741 vs. ExPASy TrEMBL
Match: I3SRW0 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.2e-08
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 4  MLAGHLLNLNTFFKIINANGTLIHFRIQKVLSNSDSRKLLNCRFRSRRSSISVGIIVSQQ 63
          ML  HL +L+TF K+I  N TLI  R Q+ + NS   K+LN  FR RR S++V II+ + 
Sbjct: 23 MLTRHLPHLHTFLKLILTNSTLIQLRAQQRIINSYRWKILNSLFRCRRCSVTVRIILCEL 82

Query: 64 LNKLLEAWSNEVIANI 80
          LN+LLEA + EVIA +
Sbjct: 83 LNQLLEASTEEVIAKV 98

[Close]

BLAST of Cmc06g0173741 vs. ExPASy TrEMBL
Match: A0A371EG49 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_56437 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.5e-05
Identity = 25/77 (32.47%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 3   YMLAGHLLNLNTFFKIINANGTLIHFRIQKVLSNSDSRKLLNCRFRSRRSSISVGIIVSQ 62
           +M A HL +L T  +++ ANG L+  R+Q+++ + D  ++L+      R +++VG++V +
Sbjct: 58  HMFARHLPHLRTLLELVQANGALVQLRVQQLVVDGDCGEILDGFLGGGRCAVAVGVVVGK 117

Query: 63  QLNKLLEAWSNEVIANI 80
            LN+LL+A + +V+A++
Sbjct: 118 LLNQLLQAGAEKVVAHV 134

The following BLAST results are available for this feature:

BLAST of Cmc06g0173741 vs. NCBI nr


Match Name	E-value	Identity	Description
RHN82633.1	2.9e-08	51.32	hypothetical protein MtrunA17_Chr1g0211901 [Medicago truncatula]	[more]
AFK43002.1	1.9e-07	50.00	unknown [Medicago truncatula]	[more]
RDX64944.1	2.0e-04	32.47	hypothetical protein CR513_56437, partial [Mucuna pruriens]	[more]

BLAST of Cmc06g0173741 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc06g0173741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A396K3S9	1.4e-08	51.32	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr1g0211901 ...	[more]
I3SRW0	9.2e-08	50.00	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
A0A371EG49	9.5e-05	32.47	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_56437 P...	[more]

BLAST of Cmc06g0173741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0173741.1	Cmc06g0173741.1	mRNA