Cmc06g0173461 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0173461
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr06: 30219605 .. 30220114 (-)
RNA-Seq Expression	Cmc06g0173461
Synteny	Cmc06g0173461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATATTTTGCCCCCCACCCCCAACTGGACTACCACCCCAGAGGGAAGTTGATCATCGCATTTTAACTATACCAGGACAGAGACCTATTAATGTAAGGCCTTATAAATATGGACACCTTCAAAAGGAGGAGACTGAGAGACTGGTGGATGAGATGTTGCAAGCCAAAGTCATTAGACCGAGCCACATCCCTTATTCGAGTCCAGTTCTATTAGTAAAGAAAAAGGATGGAGGATGGCACTTTTGTGTTAACTATAGAAGATTAAACCAAGCCACCATCTCAGATAAATTTCCAATTCCAGTGACAGAAGAACTCCTAGATGAATTACATGGGGCAACCATCTTTTCCAAATTGGACTTACGCACGGGGTATCACCGAATCAGAATGAAAGAAGAGGATGTGGAGAAGACTGCCTTTAGAACGCATGGACACTATGAATTCTTGGTGATGCCATTTGGGTTAATTAATGCTCCACTGACAAAGCTCTTACAAAAAGAATGTGTTTAA

mRNA sequence

ATGAGGATATTTTGCCCCCCACCCCCAACTGGACTACCACCCCAGAGGGAAGTTGATCATCGCATTTTAACTATACCAGGACAGAGACCTATTAATGTAAGGCCTTATAAATATGGACACCTTCAAAAGGAGGAGACTGAGAGACTGGTGGATGAGATGTTGCAAGCCAAAGTCATTAGACCGAGCCACATCCCTTATTCGAGTCCAGTTCTATTAGTAAAGAAAAAGGATGGAGGATGGCACTTTTGTGTTAACTATAGAAGATTAAACCAAGCCACCATCTCAGATAAATTTCCAATTCCAGTGACAGAAGAACTCCTAGATGAATTACATGGGGCAACCATCTTTTCCAAATTGGACTTACGCACGGGGTATCACCGAATCAGAATGAAAGAAGAGGATGTGGAGAAGACTGCCTTTAGAACGCATGGACACTATGAATTCTTGGTGATGCCATTTGGGTTAATTAATGCTCCACTGACAAAGCTCTTACAAAAAGAATGTGTTTAA

Coding sequence (CDS)

ATGAGGATATTTTGCCCCCCACCCCCAACTGGACTACCACCCCAGAGGGAAGTTGATCATCGCATTTTAACTATACCAGGACAGAGACCTATTAATGTAAGGCCTTATAAATATGGACACCTTCAAAAGGAGGAGACTGAGAGACTGGTGGATGAGATGTTGCAAGCCAAAGTCATTAGACCGAGCCACATCCCTTATTCGAGTCCAGTTCTATTAGTAAAGAAAAAGGATGGAGGATGGCACTTTTGTGTTAACTATAGAAGATTAAACCAAGCCACCATCTCAGATAAATTTCCAATTCCAGTGACAGAAGAACTCCTAGATGAATTACATGGGGCAACCATCTTTTCCAAATTGGACTTACGCACGGGGTATCACCGAATCAGAATGAAAGAAGAGGATGTGGAGAAGACTGCCTTTAGAACGCATGGACACTATGAATTCTTGGTGATGCCATTTGGGTTAATTAATGCTCCACTGACAAAGCTCTTACAAAAAGAATGTGTTTAA

Protein sequence

MRIFCPPPPTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSSPVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRIRMKEEDVEKTAFRTHGHYEFLVMPFGLINAPLTKLLQKECV

Homology

[Close]

BLAST of Cmc06g0173461 vs. NCBI nr
Match: XP_031745528.1 (uncharacterized protein LOC116405915 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 4.7e-69
Identity = 125/154 (81.17%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           P GLPP+RE DHRIL + GQ+PINVRPYKYGH QKEE E+L+ EMLQ  +IRPSH PYSS
Sbjct: 575 PKGLPPKRECDHRILLVTGQKPINVRPYKYGHTQKEEIEKLISEMLQVGIIRPSHSPYSS 634

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLV+KKDGGW FCV+YR+LNQ TISDKFPIPV EELLDELHGAT+FSKLDL++GYH+I
Sbjct: 635 PVLLVRKKDGGWRFCVDYRKLNQVTISDKFPIPVIEELLDELHGATVFSKLDLKSGYHQI 694

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RMKEEDVEKTAFRTH GHYEFLVMPFGL NAP T
Sbjct: 695 RMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPAT 728

[Close]

BLAST of Cmc06g0173461 vs. NCBI nr
Match: KGN62557.2 (hypothetical protein Csa_018739 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 4.7e-69
Identity = 125/154 (81.17%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           P GLPP+RE DHRIL + GQ+PINVRPYKYGH QKEE E+L+ EMLQ  +IRPSH PYSS
Sbjct: 42  PKGLPPKRECDHRILLVTGQKPINVRPYKYGHTQKEEIEKLISEMLQVGIIRPSHSPYSS 101

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLV+KKDGGW FCV+YR+LNQ TISDKFPIPV EELLDELHGAT+FSKLDL++GYH+I
Sbjct: 102 PVLLVRKKDGGWRFCVDYRKLNQVTISDKFPIPVIEELLDELHGATVFSKLDLKSGYHQI 161

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RMKEEDVEKTAFRTH GHYEFLVMPFGL NAP T
Sbjct: 162 RMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPAT 195

[Close]

BLAST of Cmc06g0173461 vs. NCBI nr
Match: KAA0056659.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.2 bits (692), Expect = 6.2e-69
Identity = 126/154 (81.82%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           PT LPP+R VDHRILTIPGQ+PINVRPYKYGH QKEE E+LV EMLQ  +IRPSH P+SS
Sbjct: 574 PTTLPPKRTVDHRILTIPGQKPINVRPYKYGHQQKEEIEKLVIEMLQTGIIRPSHSPFSS 633

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLVKKKDGGW FCV+YR+LN+ TI+DKFPIPV EELLDELHGAT+FSKLDL++GYH+I
Sbjct: 634 PVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGATVFSKLDLKSGYHQI 693

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RMKEED+EKTAFRTH GHYEFLVMPFGL NAP T
Sbjct: 694 RMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPAT 727

[Close]

BLAST of Cmc06g0173461 vs. NCBI nr
Match: TYK14439.1 (uncharacterized protein E5676_scaffold186G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 125/154 (81.17%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           P GLPP+RE+DHRILT+P QRPINVRPYKYGH+QKEE E LV EMLQ  +IRPSH PYSS
Sbjct: 537 PKGLPPKREIDHRILTMPDQRPINVRPYKYGHVQKEEIENLVAEMLQDGIIRPSHSPYSS 596

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLVK+KDGGW FCV+YR+LNQAT+SDKFPIPV EELLDELHGA +FSKLDL++GYH+I
Sbjct: 597 PVLLVKEKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELHGAAVFSKLDLKSGYHQI 656

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RMKEED+EKTAFRTH GHYEFLVMPFGL NA  T
Sbjct: 657 RMKEEDIEKTAFRTHEGHYEFLVMPFGLTNASAT 690

[Close]

BLAST of Cmc06g0173461 vs. NCBI nr
Match: XP_031744430.1 (uncharacterized protein LOC116405043 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 3.1e-68
Identity = 126/154 (81.82%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           P  LPP+RE+DHRIL +P QRPINVRPYKYG++QKEE E+LV EMLQA VIRPSH PYSS
Sbjct: 573 PKKLPPKREIDHRILVLPNQRPINVRPYKYGYVQKEEIEKLVVEMLQAGVIRPSHSPYSS 632

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLVKKKDGGW FCV+YR+LNQ TISDKFPIPV EELLDELHGAT+FSKLDL++GYH+I
Sbjct: 633 PVLLVKKKDGGWRFCVDYRKLNQVTISDKFPIPVIEELLDELHGATVFSKLDLKSGYHQI 692

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RM +EDVEKTAFRTH GHYEFLVMPFGL NAP T
Sbjct: 693 RMHKEDVEKTAFRTHEGHYEFLVMPFGLTNAPAT 726

[Close]

BLAST of Cmc06g0173461 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32
Identity = 75/157 (47.77%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 6   PPPPTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIP 65
           PP P  +     V H I   PG R   ++PY      ++E  ++V ++L  K I PS  P
Sbjct: 573 PPRPADI-NNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 632

Query: 66  YSSPVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGY 125
            SSPV+LV KKDG +  CV+YR LN+ATISD FP+P  + LL  +  A IF+ LDL +GY
Sbjct: 633 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 692

Query: 126 HRIRMKEEDVEKTAFRT-HGHYEFLVMPFGLINAPLT 162
           H+I M+ +D  KTAF T  G YE+ VMPFGL+NAP T
Sbjct: 693 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPST 728

[Close]

BLAST of Cmc06g0173461 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32
Identity = 75/157 (47.77%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 6   PPPPTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIP 65
           PP P  +     V H I   PG R   ++PY      ++E  ++V ++L  K I PS  P
Sbjct: 599 PPRPADI-NNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 658

Query: 66  YSSPVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGY 125
            SSPV+LV KKDG +  CV+YR LN+ATISD FP+P  + LL  +  A IF+ LDL +GY
Sbjct: 659 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 718

Query: 126 HRIRMKEEDVEKTAFRT-HGHYEFLVMPFGLINAPLT 162
           H+I M+ +D  KTAF T  G YE+ VMPFGL+NAP T
Sbjct: 719 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPST 754

[Close]

BLAST of Cmc06g0173461 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-28
Identity = 73/164 (44.51%), Postives = 98/164 (59.76%), Query Frame = 0


Query: 2   RIFCPPPPTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRP 61
           RIF  PP +G+  +  V   I T   Q PI  + Y Y    + E ER +DE+LQ  +IRP
Sbjct: 97  RIF-EPPLSGMSVETAVKAEIRT-NTQDPIYAKSYPYPVNMRGEVERQIDELLQDGIIRP 156

Query: 62  SHIPYSSPVLLVKKK-----DGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIF 121
           S+ PY+SP+ +V KK     +  +   V+++RLN  TI D +PIP     L  L  A  F
Sbjct: 157 SNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYF 216

Query: 122 SKLDLRTGYHRIRMKEEDVEKTAFRT-HGHYEFLVMPFGLINAP 160
           + LDL +G+H+I MKE D+ KTAF T +G YEFL +PFGL NAP
Sbjct: 217 TTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAP 258

[Close]

BLAST of Cmc06g0173461 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-26
Identity = 61/150 (40.67%), Postives = 86/150 (57.33%), Query Frame = 0


Query: 36  YKYGHLQKEETERLVDEMLQAKVIRPSHIPYSSPVLLVKKKDGG-----WHFCVNYRRLN 95
           Y Y    ++E E  + +ML   +IR S+ PY+SP+ +V KK        +   ++YR+LN
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 96  QATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRIRMKEEDVEKTAFRT-HGHYEFL 155
           + T+ D+ PIP  +E+L +L     F+ +DL  G+H+I M  E V KTAF T HGHYE+L
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 156 VMPFGLINAPLT----------KLLQKECV 170
            MPFGL NAP T           LL K C+
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCL 362

[Close]

BLAST of Cmc06g0173461 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.7e-26
Identity = 65/164 (39.63%), Postives = 89/164 (54.27%), Query Frame = 0


Query: 22  ILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSSPVLLVKKKDGG-- 81
           +L      PI  + Y      + E E  V EML   +IR S+ PY+SP  +V KK     
Sbjct: 198 VLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASG 257

Query: 82  ---WHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRIRMKEEDVE 141
              +   ++YR+LN+ TI D++PIP  +E+L +L     F+ +DL  G+H+I M EE + 
Sbjct: 258 ANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESIS 317

Query: 142 KTAFRT-HGHYEFLVMPFGLINAPLT----------KLLQKECV 170
           KTAF T  GHYE+L MPFGL NAP T           LL K C+
Sbjct: 318 KTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCL 361

[Close]

BLAST of Cmc06g0173461 vs. ExPASy TrEMBL
Match: A0A5A7UT21 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001910 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 126/154 (81.82%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           PT LPP+R VDHRILTIPGQ+PINVRPYKYGH QKEE E+LV EMLQ  +IRPSH P+SS
Sbjct: 574 PTTLPPKRTVDHRILTIPGQKPINVRPYKYGHQQKEEIEKLVIEMLQTGIIRPSHSPFSS 633

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLVKKKDGGW FCV+YR+LN+ TI+DKFPIPV EELLDELHGAT+FSKLDL++GYH+I
Sbjct: 634 PVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGATVFSKLDLKSGYHQI 693

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RMKEED+EKTAFRTH GHYEFLVMPFGL NAP T
Sbjct: 694 RMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPAT 727

[Close]

BLAST of Cmc06g0173461 vs. ExPASy TrEMBL
Match: A0A5D3CW02 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00980 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.1e-69
Identity = 125/154 (81.17%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           P GLPP+RE+DHRILT+P QRPINVRPYKYGH+QKEE E LV EMLQ  +IRPSH PYSS
Sbjct: 537 PKGLPPKREIDHRILTMPDQRPINVRPYKYGHVQKEEIENLVAEMLQDGIIRPSHSPYSS 596

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLVK+KDGGW FCV+YR+LNQAT+SDKFPIPV EELLDELHGA +FSKLDL++GYH+I
Sbjct: 597 PVLLVKEKDGGWRFCVDYRKLNQATVSDKFPIPVIEELLDELHGAAVFSKLDLKSGYHQI 656

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RMKEED+EKTAFRTH GHYEFLVMPFGL NA  T
Sbjct: 657 RMKEEDIEKTAFRTHEGHYEFLVMPFGLTNASAT 690

[Close]

BLAST of Cmc06g0173461 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.5e-68
Identity = 122/154 (79.22%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           PT LPP+R +DHRILT+PGQ+PINVRPYKYGH QKEE E+LV EMLQ  +IRPSH P+SS
Sbjct: 574 PTTLPPKRSIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEMLQTGIIRPSHSPFSS 633

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLVKKKDGGW FCV+YR+LN+ TI+DKFPIPV EELLDELHGAT+FSKLDL++GYH+I
Sbjct: 634 PVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGATVFSKLDLKSGYHQI 693

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RM+EED+EKTAFRTH GHYEF+VMPFGL NAP T
Sbjct: 694 RMREEDIEKTAFRTHEGHYEFVVMPFGLTNAPAT 727

[Close]

BLAST of Cmc06g0173461 vs. ExPASy TrEMBL
Match: A0A5A7VK94 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001740 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.5e-68
Identity = 123/154 (79.87%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           PT LPP+R +DHRILT+PGQ+PINVRPYKYGH QKEE E+LV EMLQ  +IRPSH P+SS
Sbjct: 646 PTTLPPKRTIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEMLQTGIIRPSHSPFSS 705

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLVKKKDGGW FCV+YR+LN+ TI+DKFPIPV EELLDELHGAT+FSKLDL++GYH+I
Sbjct: 706 PVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGATMFSKLDLKSGYHQI 765

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RMKEED+EKTAFRTH GHYEF+VMPFGL NAP T
Sbjct: 766 RMKEEDIEKTAFRTHEGHYEFVVMPFGLTNAPAT 799

[Close]

BLAST of Cmc06g0173461 vs. ExPASy TrEMBL
Match: A0A5D3DZK6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00310 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.5e-68
Identity = 122/154 (79.22%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 9   PTGLPPQREVDHRILTIPGQRPINVRPYKYGHLQKEETERLVDEMLQAKVIRPSHIPYSS 68
           PT LPP+R +DHRILT+PGQ+PINVRPYKYGH QKEE E+LV EMLQ  +IRPSH P+SS
Sbjct: 574 PTTLPPKRSIDHRILTLPGQKPINVRPYKYGHQQKEEIEKLVIEMLQTGIIRPSHSPFSS 633

Query: 69  PVLLVKKKDGGWHFCVNYRRLNQATISDKFPIPVTEELLDELHGATIFSKLDLRTGYHRI 128
           PVLLVKKKDGGW FCV+YR+LN+ TI+DKFPIPV EELLDELHGAT+FSKLDL++GYH+I
Sbjct: 634 PVLLVKKKDGGWRFCVDYRKLNKITIADKFPIPVIEELLDELHGATVFSKLDLKSGYHQI 693

Query: 129 RMKEEDVEKTAFRTH-GHYEFLVMPFGLINAPLT 162
           RM+EED+EKTAFRTH GHYEF+VMPFGL NAP T
Sbjct: 694 RMREEDIEKTAFRTHEGHYEFVVMPFGLTNAPAT 727

[Close]

BLAST of Cmc06g0173461 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-07
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 41 LQKEETERLVDEMLQAKVIRPSHIPYSSPVLLVKKKDGGW 81
          L++   +  + EML+A++I+PS  PYSSPVLLV+KKDGGW
Sbjct: 40 LRRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Cmc06g0173461 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745528.1	4.7e-69	81.17	uncharacterized protein LOC116405915 [Cucumis sativus]	[more]
KGN62557.2	4.7e-69	81.17	hypothetical protein Csa_018739 [Cucumis sativus]	[more]
KAA0056659.1	6.2e-69	81.82	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14439.1	1.1e-68	81.17	uncharacterized protein E5676_scaffold186G00980 [Cucumis melo var. makuwa]	[more]
XP_031744430.1	3.1e-68	81.82	uncharacterized protein LOC116405043 [Cucumis sativus]	[more]

BLAST of Cmc06g0173461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.8e-32	47.77	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.8e-32	47.77	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	2.5e-28	44.51	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	3.9e-26	40.67	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	6.7e-26	39.63	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]

BLAST of Cmc06g0173461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT21	3.0e-69	81.82	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CW02	5.1e-69	81.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BBH7	2.5e-68	79.22	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VK94	2.5e-68	79.87	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DZK6	2.5e-68	79.22	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc06g0173461 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	1.9e-07	57.50	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 73..160 e-value: 4.0E-9 score: 36.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 98..161 e-value: 3.7E-53 score: 182.0
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 18..157 e-value: 3.7E-53 score: 182.0
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 9..161
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 9..161
None	No IPR available	CDD	cd01647	RT_LTR	coord: 57..159 e-value: 8.45046E-52 score: 161.609
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 6..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0173461.1	Cmc06g0173461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding