Cmc06g0173011 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0173011
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr06: 29735295 .. 29735720 (+)
RNA-Seq Expression	Cmc06g0173011
Synteny	Cmc06g0173011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTAGAACTGCTTTCCTAAATGGTGATTTAGAAGAAGAGATTTACATGGAACAACTTAAAGGTTTCATAGTTCACGGCCAAGAATCCAAAGTTTGCAAACTAGATAAATTCCTCTATAGCCTAAAACAAGCTCCCAAGCAATGGCACGAAACGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTAAAGGTAGGCTATGTATTATCATATGCCTATACGTAGATGACATGTTAATCTTTGGATCAAACTTTCACATCATAAATGATGTAAAGTCTATGTTAAGGGAAAATTTTGACATGAAAGGCCTAGGTGAAGCTGATGTAATCTTAGACATCAAAATTACAAGAACTGAAAATGGAATTTTCGTAGATCAATCTCATTAA

mRNA sequence

ATGGATGTTAGAACTGCTTTCCTAAATGGTGATTTAGAAGAAGAGATTTACATGGAACAACTTAAAGGTTTCATAGTTCACGGCCAAGAATCCAAAGTTTGCAAACTAGATAAATTCCTCTATAGCCTAAAACAAGCTCCCAAGCAATGGCACGAAACGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTAAAGGTAGGCTATGTATTATCATATGCCTATACGTAGATGACATGTTAATCTTTGGATCAAACTTTCACATCATAAATGATGTAAAGTCTATGTTAAGGGAAAATTTTGACATGAAAGGCCTAGGTGAAGCTGATGTAATCTTAGACATCAAAATTACAAGAACTGAAAATGGAATTTTCGTAGATCAATCTCATTAA

Coding sequence (CDS)

ATGGATGTTAGAACTGCTTTCCTAAATGGTGATTTAGAAGAAGAGATTTACATGGAACAACTTAAAGGTTTCATAGTTCACGGCCAAGAATCCAAAGTTTGCAAACTAGATAAATTCCTCTATAGCCTAAAACAAGCTCCCAAGCAATGGCACGAAACGTTTGACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTAAAGGTAGGCTATGTATTATCATATGCCTATACGTAGATGACATGTTAATCTTTGGATCAAACTTTCACATCATAAATGATGTAAAGTCTATGTTAAGGGAAAATTTTGACATGAAAGGCCTAGGTGAAGCTGATGTAATCTTAGACATCAAAATTACAAGAACTGAAAATGGAATTTTCGTAGATCAATCTCATTAA

Protein sequence

MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEADVILDIKITRTENGIFVDQSH

Homology

[Close]

BLAST of Cmc06g0173011 vs. NCBI nr
Match: KAA0060459.1 (hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK18544.1 hypothetical protein E5676_scaffold119G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 262.3 bits (669), Expect = 2.4e-66
Identity = 126/141 (89.36%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+TAFLNGDLEEEIYMEQ +GFIVH QESKVCKLDK LY LKQAPKQWHE FDNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQPEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNESDKCIYYKT+GRLCIIICLYVDDMLIFGSN H+INDVKSML  NFDMK LGEA
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEA 120

Query: 121 DVILDIKITRTENGIFVDQSH 142
           DVIL IKITRTENGIF+DQSH
Sbjct: 121 DVILGIKITRTENGIFLDQSH 141

[Close]

BLAST of Cmc06g0173011 vs. NCBI nr
Match: KAA0036533.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 258.1 bits (658), Expect = 4.5e-65
Identity = 124/141 (87.94%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+T FLNGDLEEEIYMEQ +GFIV  QESKVCKLDK LY LKQAPK+WH+ FDNLLMS
Sbjct: 117 MDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKEWHKKFDNLLMS 176

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNES+KCIYYKTKGRLCIIICLYVDDMLIFGSN HIINDVKSML  NFDMK LGEA
Sbjct: 177 KGFKVNESNKCIYYKTKGRLCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 236

Query: 121 DVILDIKITRTENGIFVDQSH 142
           DVILDIKITRTENGIF+DQSH
Sbjct: 237 DVILDIKITRTENGIFLDQSH 257

[Close]

BLAST of Cmc06g0173011 vs. NCBI nr
Match: TYK06419.1 (hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 3.8e-64
Identity = 122/141 (86.52%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+TAFLNGDLEEEIYMEQ +GFIVHGQESKVCKLDK LY LKQAPKQWHE FDNLL+S
Sbjct: 48  MDVKTAFLNGDLEEEIYMEQSEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLLS 107

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNESDKCIYYKT+GRLCIIICLYVDD+LIFGSN ++INDVKSML ENFDMK L EA
Sbjct: 108 KGFKVNESDKCIYYKTEGRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELDEA 167

Query: 121 DVILDIKITRTENGIFVDQSH 142
           DVIL IKITRT+NGI +DQSH
Sbjct: 168 DVILGIKITRTKNGISLDQSH 188

[Close]

BLAST of Cmc06g0173011 vs. NCBI nr
Match: KAA0036466.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK00021.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-64
Identity = 123/141 (87.23%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+TAFLNGDLEEEIYMEQL GFIVH QESKVCKLDKFLY LKQAPKQW+E FDNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQLIGFIVHDQESKVCKLDKFLYGLKQAPKQWYEKFDNLLMS 60

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNESDKCIYYKT+GRLCIIICLYVDDMLIFGSN H+INDVKSM   NFDMK LGEA
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMFSANFDMKDLGEA 120

Query: 121 DVILDIKITRTENGIFVDQSH 142
           DVIL IKITR EN I +DQSH
Sbjct: 121 DVILGIKITRIENRISLDQSH 141

[Close]

BLAST of Cmc06g0173011 vs. NCBI nr
Match: TYK11906.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 118/141 (83.69%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+TAFLN DLEEEIYM+Q +GFIVHGQESKVCKLDK LY LKQA KQWHE FDNL MS
Sbjct: 88  MDVKTAFLNCDLEEEIYMKQFEGFIVHGQESKVCKLDKSLYGLKQASKQWHEKFDNLFMS 147

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNESDKCIYYK +GRLCIIICLYVDDMLIFGSN H++NDVKSM   N DMK LGEA
Sbjct: 148 KGFKVNESDKCIYYKNEGRLCIIICLYVDDMLIFGSNLHVVNDVKSMFSANLDMKDLGEA 207

Query: 121 DVILDIKITRTENGIFVDQSH 142
           +VIL IKITRTENGIF+DQSH
Sbjct: 208 NVILGIKITRTENGIFLDQSH 228

[Close]

BLAST of Cmc06g0173011 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-30
Identity = 69/131 (52.67%), Postives = 91/131 (69.47%), Query Frame = 0


Query: 1    MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
            +DV+TAFL+GDLEEEIYMEQ +GF V G++  VCKL+K LY LKQAP+QW+  FD+ + S
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGFKVNESDKCIYYKT-KGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGE 120
            + +    SD C+Y+K       II+ LYVDDMLI G +  +I  +K  L ++FDMK LG 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  ADVILDIKITR 131
            A  IL +KI R
Sbjct: 1041 AQQILGMKIVR 1051

[Close]

BLAST of Cmc06g0173011 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 101.3 bits (251), Expect = 9.3e-21
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 1    MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
            MDV+TAFLNG L+EEIYM   +G  +      VCKL+K +Y LKQA + W E F+  L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGFKVNESDKCIYYKTKGRL--CIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLG 120
              F  +  D+CIY   KG +   I + LYVDD++I   +   +N+ K  L E F M  L 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  EADVILDIKITRTENGIFVDQS 141
            E    + I+I   E+ I++ QS
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQS 1140

[Close]

BLAST of Cmc06g0173011 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-19
Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = 0


Query: 1    MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
            +DV  AFL G L +++YM Q  GFI   + + VCKL K LY LKQAP+ W+    N L++
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
             GF  + SD  ++   +G+  + + +YVDD+LI G++  ++++    L + F +K   E 
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  DVILDIKITRTENGIFVDQ 140
               L I+  R   G+ + Q
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQ 1202

[Close]

BLAST of Cmc06g0173011 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-18
Identity = 47/139 (33.81%), Postives = 75/139 (53.96%), Query Frame = 0


Query: 1    MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
            +DV  AFL G L +E+YM Q  GF+   +   VC+L K +Y LKQAP+ W+      L++
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
             GF  + SD  ++   +GR  I + +YVDD+LI G++  ++      L + F +K   + 
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  DVILDIKITRTENGIFVDQ 140
               L I+  R   G+ + Q
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQ 1185

[Close]

BLAST of Cmc06g0173011 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 7.3e-18
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV TAFLN  ++E IY++Q  GF+       V +L   +Y LKQAP  W+E  +N L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
            GF  +E +  +Y+++     I I +YVDD+L+   +  I + VK  L + + MK LG+ 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 DVILDIKITRTENG 135
           D  L + I ++ NG
Sbjct: 121 DKFLGLNIHQSSNG 134

[Close]

BLAST of Cmc06g0173011 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 126/141 (89.36%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+TAFLNGDLEEEIYMEQ +GFIVH QESKVCKLDK LY LKQAPKQWHE FDNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQPEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNESDKCIYYKT+GRLCIIICLYVDDMLIFGSN H+INDVKSML  NFDMK LGEA
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEA 120

Query: 121 DVILDIKITRTENGIFVDQSH 142
           DVIL IKITRTENGIF+DQSH
Sbjct: 121 DVILGIKITRTENGIFLDQSH 141

[Close]

BLAST of Cmc06g0173011 vs. ExPASy TrEMBL
Match: A0A5A7T0X0 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00340 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 124/141 (87.94%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+T FLNGDLEEEIYMEQ +GFIV  QESKVCKLDK LY LKQAPK+WH+ FDNLLMS
Sbjct: 117 MDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKEWHKKFDNLLMS 176

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNES+KCIYYKTKGRLCIIICLYVDDMLIFGSN HIINDVKSML  NFDMK LGEA
Sbjct: 177 KGFKVNESNKCIYYKTKGRLCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 236

Query: 121 DVILDIKITRTENGIFVDQSH 142
           DVILDIKITRTENGIF+DQSH
Sbjct: 237 DVILDIKITRTENGIFLDQSH 257

[Close]

BLAST of Cmc06g0173011 vs. ExPASy TrEMBL
Match: A0A5D3C7T6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001210 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.8e-64
Identity = 122/141 (86.52%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+TAFLNGDLEEEIYMEQ +GFIVHGQESKVCKLDK LY LKQAPKQWHE FDNLL+S
Sbjct: 48  MDVKTAFLNGDLEEEIYMEQSEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLLS 107

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNESDKCIYYKT+GRLCIIICLYVDD+LIFGSN ++INDVKSML ENFDMK L EA
Sbjct: 108 KGFKVNESDKCIYYKTEGRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELDEA 167

Query: 121 DVILDIKITRTENGIFVDQSH 142
           DVIL IKITRT+NGI +DQSH
Sbjct: 168 DVILGIKITRTKNGISLDQSH 188

[Close]

BLAST of Cmc06g0173011 vs. ExPASy TrEMBL
Match: A0A5D3BJM0 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00660 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.2e-64
Identity = 123/141 (87.23%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+TAFLNGDLEEEIYMEQL GFIVH QESKVCKLDKFLY LKQAPKQW+E FDNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQLIGFIVHDQESKVCKLDKFLYGLKQAPKQWYEKFDNLLMS 60

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNESDKCIYYKT+GRLCIIICLYVDDMLIFGSN H+INDVKSM   NFDMK LGEA
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMFSANFDMKDLGEA 120

Query: 121 DVILDIKITRTENGIFVDQSH 142
           DVIL IKITR EN I +DQSH
Sbjct: 121 DVILGIKITRIENRISLDQSH 141

[Close]

BLAST of Cmc06g0173011 vs. ExPASy TrEMBL
Match: A0A5D3CNA1 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00710 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.7e-62
Identity = 118/141 (83.69%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQESKVCKLDKFLYSLKQAPKQWHETFDNLLMS 60
           MDV+TAFLN DLEEEIYM+Q +GFIVHGQESKVCKLDK LY LKQA KQWHE FDNL MS
Sbjct: 88  MDVKTAFLNCDLEEEIYMKQFEGFIVHGQESKVCKLDKSLYGLKQASKQWHEKFDNLFMS 147

Query: 61  KGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEA 120
           KGFKVNESDKCIYYK +GRLCIIICLYVDDMLIFGSN H++NDVKSM   N DMK LGEA
Sbjct: 148 KGFKVNESDKCIYYKNEGRLCIIICLYVDDMLIFGSNLHVVNDVKSMFSANLDMKDLGEA 207

Query: 121 DVILDIKITRTENGIFVDQSH 142
           +VIL IKITRTENGIF+DQSH
Sbjct: 208 NVILGIKITRTENGIFLDQSH 228

[Close]

BLAST of Cmc06g0173011 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-20
Identity = 52/143 (36.36%), Postives = 80/143 (55.94%), Query Frame = 0


Query: 1   MDVRTAFLNGDLEEEIYMEQLKGFIVHGQES----KVCKLDKFLYSLKQAPKQWHETFDN 60
           +D+  AFLNGDL+EEIYM+   G+     +S     VC L K +Y LKQA +QW   F  
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  LLMSKGFKVNESDKCIYYKTKGRLCIIICLYVDDMLIFGSNFHIINDVKSMLRENFDMKG 120
            L+  GF  + SD   + K    L + + +YVDD++I  +N   ++++KS L+  F ++ 
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 LGEADVILDIKITRTENGIFVDQ 140
           LG     L ++I R+  GI + Q
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQ 335

[Close]

BLAST of Cmc06g0173011 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.7e-04
Identity = 21/57 (36.84%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 84  ICLYVDDMLIFGSNFHIINDVKSMLRENFDMKGLGEADVILDIKITRTENGIFVDQS 141
           + LYVDD+L+ GS+  ++N +   L   F MK LG     L I+I    +G+F+ Q+
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQT 59

The following BLAST results are available for this feature:

BLAST of Cmc06g0173011 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060459.1	2.4e-66	89.36	hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK1854...	[more]
KAA0036533.1	4.5e-65	87.94	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
TYK06419.1	3.8e-64	86.52	hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]	[more]
KAA0036466.1	6.5e-64	87.23	putative Polyprotein [Cucumis melo var. makuwa] >TYK00021.1 putative Polyprotein...	[more]
TYK11906.1	3.6e-62	83.69	putative Polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0173011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-30	52.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.3e-21	40.85	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.7e-19	35.25	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.3e-18	33.81	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	7.3e-18	37.31	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc06g0173011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4T4	1.2e-66	89.36	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5A7T0X0	2.2e-65	87.94	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3C7T6	1.8e-64	86.52	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BJM0	3.2e-64	87.23	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360...	[more]
A0A5D3CNA1	1.7e-62	83.69	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177...	[more]

BLAST of Cmc06g0173011 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-20	36.36	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.7e-04	36.84	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..139 e-value: 1.9E-42 score: 145.5
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..130
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0173011.1	Cmc06g0173011.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding