Cmc06g0172591 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0172591
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr06: 28722052 .. 28722495 (+)
RNA-Seq Expression	Cmc06g0172591
Synteny	Cmc06g0172591

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACAACTTCTATCTTGGTTGGATATTGCGATGCAGATTGGGCTGACTCTTTTAATGACAGGAAAAGCACCTCTTGAGGGTTTCTTTCTTGGGAATAATCTTATCTCATGGCTTAGTAAGAAACAAAATTGTTTTTCCATGTCTACTGCAAAAGCTGAGTATATTGCTGCAAGGAGTGCTTGTACCCAGTTAATGTGGATGAAAAATATGTTGTATGAGTATGGATTCACTCAGGATATTATGGCCTTATACTCTGATAATATGTGTACTATTGATATATCAAAAAATCGAGTTCAACGTATTCGAAACAAACACATTGATAAAAGGCATCATTTTATTAGAGAGCTTATTGAAAATAAGATTATTACACTGGAACATATTCGCTTAAATTTGAAATTGGCAGATATCTTCACTAAGCCACTTGATGCGAGCACATTTTAG

mRNA sequence

ATGATACAACTTCTATCTTGGTTGGATATTGCGATGCAGATTGGGCTGACTCTTTTAATGACAGGAAAAGCACCTCTTGAGGGTTTCTTTCTTGGGAATAATCTTATCTCATGGCTTAGTAAGAAACAAAATTGTTTTTCCATGTCTACTGCAAAAGCTGAGTATATTGCTGCAAGGAGTGCTTGTACCCAGTTAATGTGGATGAAAAATATGTTGTATGAGTATGGATTCACTCAGGATATTATGGCCTTATACTCTGATAATATGTGTACTATTGATATATCAAAAAATCGAGTTCAACGTATTCGAAACAAACACATTGATAAAAGGCATCATTTTATTAGAGAGCTTATTGAAAATAAGATTATTACACTGGAACATATTCGCTTAAATTTGAAATTGGCAGATATCTTCACTAAGCCACTTGATGCGAGCACATTTTAG

Coding sequence (CDS)

ATGATACAACTTCTATCTTGGTTGGATATTGCGATGCAGATTGGGCTGACTCTTTTAATGACAGGAAAAGCACCTCTTGAGGGTTTCTTTCTTGGGAATAATCTTATCTCATGGCTTAGTAAGAAACAAAATTGTTTTTCCATGTCTACTGCAAAAGCTGAGTATATTGCTGCAAGGAGTGCTTGTACCCAGTTAATGTGGATGAAAAATATGTTGTATGAGTATGGATTCACTCAGGATATTATGGCCTTATACTCTGATAATATGTGTACTATTGATATATCAAAAAATCGAGTTCAACGTATTCGAAACAAACACATTGATAAAAGGCATCATTTTATTAGAGAGCTTATTGAAAATAAGATTATTACACTGGAACATATTCGCTTAAATTTGAAATTGGCAGATATCTTCACTAAGCCACTTGATGCGAGCACATTTTAG

Protein sequence

MIQLLSWLDIAMQIGLTLLMTGKAPLEGFFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDNMCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF

Homology

[Close]

BLAST of Cmc06g0172591 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 6.6e-43
Identity = 90/119 (75.63%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           FFLGNNLISWLSKKQNC S+ST +AEYIAA S CTQL+WMKNML+EYGF QD M LY DN
Sbjct: 153 FFLGNNLISWLSKKQNCVSLSTTEAEYIAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDN 212

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
              IDISKN VQ  R KHID RHHFIREL+E+K+I L+HIR NL+L DIFTKPLDAS+F
Sbjct: 213 TSAIDISKNPVQHSRTKHIDIRHHFIRELVEDKVIKLDHIRSNLQLVDIFTKPLDASSF 271

[Close]

BLAST of Cmc06g0172591 vs. NCBI nr
Match: KAA0048308.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK10653.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 91/119 (76.47%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           FFLGNNLISW SKKQN  S+STA+AEYIA  S CTQL+WMKNML+EY  TQD+M +Y DN
Sbjct: 109 FFLGNNLISWFSKKQNSVSLSTAEAEYIAVGSGCTQLIWMKNMLHEYEITQDVMTMYCDN 168

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
           M  IDISKN +QR R K+ID RHHFIRELIENKIITLEHIR N +LADIFTKPLDA+TF
Sbjct: 169 MNAIDISKNPIQRSRTKYIDIRHHFIRELIENKIITLEHIRSNSQLADIFTKPLDATTF 227

[Close]

BLAST of Cmc06g0172591 vs. NCBI nr
Match: PNX99239.1 (gag-pol polyprotein, partial [Trifolium pratense])

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-37
Identity = 82/119 (68.91%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           FFLGNNLISW SKKQNC S+ST +AEYIAA S+C QL+WMK ML EY   QD M L+SDN
Sbjct: 532 FFLGNNLISWFSKKQNCVSLSTTEAEYIAAGSSCAQLLWMKQMLTEYNVEQDAMTLFSDN 591

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
           +  I+ISKN VQ  R KHID RHHFIREL+E+KI+ LEHI    +LADIFTKPLDA  F
Sbjct: 592 ISAINISKNPVQHSRTKHIDIRHHFIRELVEDKIVNLEHIATEKQLADIFTKPLDAVRF 650

[Close]

BLAST of Cmc06g0172591 vs. NCBI nr
Match: TXG60530.1 (hypothetical protein EZV62_015103 [Acer yangbiense])

HSP 1 Score: 164.9 bits (416), Expect = 5.4e-37
Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           FFLGNNL+SW  KKQN  S+STA+AEYIAA S CTQL+WMK ML +YGF Q  + L+ DN
Sbjct: 709 FFLGNNLVSWFCKKQNSISLSTAEAEYIAAGSGCTQLLWMKQMLVDYGFNQGTLTLFCDN 768

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
           M  I+ISKN VQ  R KHID RHHFIREL+ENK I LEH+  N +LAD+FTKPLDA+ F
Sbjct: 769 MSAINISKNPVQHSRTKHIDIRHHFIRELVENKCIVLEHVGTNDQLADLFTKPLDATRF 827

[Close]

BLAST of Cmc06g0172591 vs. NCBI nr
Match: KHM99983.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja] >KHN04062.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja] >KHN04836.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja] >KHN05984.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja] >KHN06644.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 164.5 bits (415), Expect = 7.1e-37
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           F+LGNNLISW SKKQNC S+STA+AEYIAA S+C+QL+WMK ML EY   QD+M LY DN
Sbjct: 57  FYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDN 116

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
           M  I+ISKN VQ  R KHID RHH+IREL+++K+ITLEH+    ++ADIFTK LDA+ F
Sbjct: 117 MSAINISKNPVQHSRTKHIDIRHHYIRELVDDKVITLEHVDTEEQIADIFTKALDANQF 175

[Close]

BLAST of Cmc06g0172591 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-17
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 0


Query: 29   FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
            F      ISW SK Q C ++ST +AEYIAA     +++W+K  L E G  Q    +Y D+
Sbjct: 1198 FTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDS 1257

Query: 89   MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
               ID+SKN +   R KHID R+H+IRE+++++ + +  I  N   AD+ TK +  + F
Sbjct: 1258 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKF 1316

[Close]

BLAST of Cmc06g0172591 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-16
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 34   NLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGF-TQDIMALYSDNMCTI 93
            NLI W +K+QN  + S+ +AEY+A   A  + +W+K +L       ++ + +Y DN   I
Sbjct: 1277 NLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCI 1336

Query: 94   DISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
             I+ N     R KHID ++HF RE ++N +I LE+I    +LADIFTKPL A+ F
Sbjct: 1337 SIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391

[Close]

BLAST of Cmc06g0172591 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.2e-43
Identity = 90/119 (75.63%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           FFLGNNLISWLSKKQNC S+ST +AEYIAA S CTQL+WMKNML+EYGF QD M LY DN
Sbjct: 153 FFLGNNLISWLSKKQNCVSLSTTEAEYIAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDN 212

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
              IDISKN VQ  R KHID RHHFIREL+E+K+I L+HIR NL+L DIFTKPLDAS+F
Sbjct: 213 TSAIDISKNPVQHSRTKHIDIRHHFIRELVEDKVIKLDHIRSNLQLVDIFTKPLDASSF 271

[Close]

BLAST of Cmc06g0172591 vs. ExPASy TrEMBL
Match: A0A5A7TZB3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00150 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.1e-43
Identity = 91/119 (76.47%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           FFLGNNLISW SKKQN  S+STA+AEYIA  S CTQL+WMKNML+EY  TQD+M +Y DN
Sbjct: 109 FFLGNNLISWFSKKQNSVSLSTAEAEYIAVGSGCTQLIWMKNMLHEYEITQDVMTMYCDN 168

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
           M  IDISKN +QR R K+ID RHHFIRELIENKIITLEHIR N +LADIFTKPLDA+TF
Sbjct: 169 MNAIDISKNPIQRSRTKYIDIRHHFIRELIENKIITLEHIRSNSQLADIFTKPLDATTF 227

[Close]

BLAST of Cmc06g0172591 vs. ExPASy TrEMBL
Match: A0A2K3N8B2 (Gag-pol polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g022503 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.5e-37
Identity = 82/119 (68.91%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           FFLGNNLISW SKKQNC S+ST +AEYIAA S+C QL+WMK ML EY   QD M L+SDN
Sbjct: 532 FFLGNNLISWFSKKQNCVSLSTTEAEYIAAGSSCAQLLWMKQMLTEYNVEQDAMTLFSDN 591

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
           +  I+ISKN VQ  R KHID RHHFIREL+E+KI+ LEHI    +LADIFTKPLDA  F
Sbjct: 592 ISAINISKNPVQHSRTKHIDIRHHFIRELVEDKIVNLEHIATEKQLADIFTKPLDAVRF 650

[Close]

BLAST of Cmc06g0172591 vs. ExPASy TrEMBL
Match: A0A5C7HUE9 (Integrase catalytic domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_015103 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.6e-37
Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           FFLGNNL+SW  KKQN  S+STA+AEYIAA S CTQL+WMK ML +YGF Q  + L+ DN
Sbjct: 709 FFLGNNLVSWFCKKQNSISLSTAEAEYIAAGSGCTQLLWMKQMLVDYGFNQGTLTLFCDN 768

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
           M  I+ISKN VQ  R KHID RHHFIREL+ENK I LEH+  N +LAD+FTKPLDA+ F
Sbjct: 769 MSAINISKNPVQHSRTKHIDIRHHFIRELVENKCIVLEHVGTNDQLADLFTKPLDATRF 827

[Close]

BLAST of Cmc06g0172591 vs. ExPASy TrEMBL
Match: A0A0B2QVA2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja OX=3848 GN=glysoja_035679 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.4e-37
Identity = 79/119 (66.39%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 29  FFLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGFTQDIMALYSDN 88
           F+LGNNLISW SKKQNC S+STA+AEYIAA S+C+QL+WMK ML EY   QD+M LY DN
Sbjct: 57  FYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDN 116

Query: 89  MCTIDISKNRVQRIRNKHIDKRHHFIRELIENKIITLEHIRLNLKLADIFTKPLDASTF 148
           M  I+ISKN VQ  R KHID RHH+IREL+++K+ITLEH+    ++ADIFTK LDA+ F
Sbjct: 117 MSAINISKNPVQHSRTKHIDIRHHYIRELVDDKVITLEHVDTEEQIADIFTKALDANQF 175

[Close]

BLAST of Cmc06g0172591 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-09
Identity = 36/88 (40.91%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 30  FLGNNLISWLSKKQNCFSMSTAKAEYIAARSACTQLMWMKNMLYEYGF-TQDIMALYSDN 89
           FLG +LISW SKKQ   S S+A+AEY A   A  ++MW+     E          L+ DN
Sbjct: 466 FLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDN 525

Query: 90  MCTIDISKNRVQRIRNKHIDKRHHFIRE 117
              I I+ N V   R KHI+   H +RE
Sbjct: 526 TAAIHIATNAVFHERTKHIESDCHSVRE 553

The following BLAST results are available for this feature:

BLAST of Cmc06g0172591 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055610.1	6.6e-43	75.63	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [...	[more]
KAA0048308.1	1.5e-42	76.47	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK10653.1 gag-pol polyprotein [...	[more]
PNX99239.1	3.2e-37	68.91	gag-pol polyprotein, partial [Trifolium pratense]	[more]
TXG60530.1	5.4e-37	67.23	hypothetical protein EZV62_015103 [Acer yangbiense]	[more]
KHM99983.1	7.1e-37	66.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so...	[more]

BLAST of Cmc06g0172591 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-17	38.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.2e-16	40.87	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc06g0172591 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLL1	3.2e-43	75.63	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G...	[more]
A0A5A7TZB3	7.1e-43	76.47	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G0...	[more]
A0A2K3N8B2	1.5e-37	68.91	Gag-pol polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g022503 PE...	[more]
A0A5C7HUE9	2.6e-37	67.23	Integrase catalytic domain-containing protein OS=Acer yangbiense OX=1000413 GN=E...	[more]
A0A0B2QVA2	3.4e-37	66.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin...	[more]

BLAST of Cmc06g0172591 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.9e-09	40.91	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 24..142
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 24..142
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 29..142 e-value: 4.01087E-51 score: 157.63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0172591.1	Cmc06g0172591.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0052923	all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding