Cmc06g0172101 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0172101
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 27990842 .. 27991243 (+)
RNA-Seq Expression	Cmc06g0172101
Synteny	Cmc06g0172101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGACCTGCAGTCAGGCTATCACCAGTTGAGGATCAGAGACAATAATATCCTTAAGACGGCCTTCCGTTCTAGATACAGACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGCAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGACTTCCTAGACTCGTTCATCATAGTTTTCATTGATCACATTTTGATCTACTCCAAAACGGAGGCTGAGCATGAGGAGCACTTGCACAAAGTTTTGGAGACTCTTCGAGCCAATAGGCTGTATGCCAAGTTCTCCAAATGTGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTGGATCCAGCAAAGATCGAAGCGGTTACCAATTGA

mRNA sequence

ATGATCGACCTGCAGTCAGGCTATCACCAGTTGAGGATCAGAGACAATAATATCCTTAAGACGGCCTTCCGTTCTAGATACAGACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGCAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGACTTCCTAGACTCGTTCATCATAGTTTTCATTGATCACATTTTGATCTACTCCAAAACGGAGGCTGAGCATGAGGAGCACTTGCACAAAGTTTTGGAGACTCTTCGAGCCAATAGGCTGTATGCCAAGTTCTCCAAATGTGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTGGATCCAGCAAAGATCGAAGCGGTTACCAATTGA

Coding sequence (CDS)

ATGATCGACCTGCAGTCAGGCTATCACCAGTTGAGGATCAGAGACAATAATATCCTTAAGACGGCCTTCCGTTCTAGATACAGACATTACGAGTTCATTGTGATGTCTTTTGGGTTGACTAATGCTCCTGCAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGACTTCCTAGACTCGTTCATCATAGTTTTCATTGATCACATTTTGATCTACTCCAAAACGGAGGCTGAGCATGAGGAGCACTTGCACAAAGTTTTGGAGACTCTTCGAGCCAATAGGCTGTATGCCAAGTTCTCCAAATGTGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTGTGGATCCAGCAAAGATCGAAGCGGTTACCAATTGA

Protein sequence

MIDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFIIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTN

Homology

[Close]

BLAST of Cmc06g0172101 vs. NCBI nr
Match: TYK28967.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 3.7e-61
Identity = 122/132 (92.42%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDL+SGYHQLRIRD++I KTAFRSRYRHYEFI+MSFGLTNAPAVFMDLMNRVFKDFLDSF
Sbjct: 441 IDLRSGYHQLRIRDSDIPKTAFRSRYRHYEFIMMSFGLTNAPAVFMDLMNRVFKDFLDSF 500

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           IIVFID ILIYSKTE EHEEHLH+VLETLRAN+LYAKFSKCEFWLKKV FLGHVVSSEGV
Sbjct: 501 IIVFIDDILIYSKTEVEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVMFLGHVVSSEGV 560

Query: 122 SVDPAKIEAVTN 134
           SVDPAKIEAVTN
Sbjct: 561 SVDPAKIEAVTN 572

[Close]

BLAST of Cmc06g0172101 vs. NCBI nr
Match: KAA0056047.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 3.7e-61
Identity = 121/132 (91.67%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDLQSGYHQLRIRD++I KTAFRSRY HYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF
Sbjct: 567 IDLQSGYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 626

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           +IVFID ILIYSKTEAEHEEHLH+VLETLRAN+LY KFSKCEFWLKKV+FLGHVVSSEGV
Sbjct: 627 VIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSSEGV 686

Query: 122 SVDPAKIEAVTN 134
           S+DPAKIEAVTN
Sbjct: 687 SMDPAKIEAVTN 698

[Close]

BLAST of Cmc06g0172101 vs. NCBI nr
Match: KAA0046956.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 4.9e-61
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 6   SGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFIIVF 65
           SGYH+LRIRD+NI KTAFRSRYRHYEFIVMSFGLTNAP VFMDLMNRVFKDFLDSF+IVF
Sbjct: 560 SGYHKLRIRDSNIPKTAFRSRYRHYEFIVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVF 619

Query: 66  IDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDP 125
           I+HILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDP
Sbjct: 620 INHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDP 679

Query: 126 AKIEAVTN 134
           AKIE VTN
Sbjct: 680 AKIEMVTN 687

[Close]

BLAST of Cmc06g0172101 vs. NCBI nr
Match: TYK09653.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 4.9e-61
Identity = 123/132 (93.18%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDL+SGYHQLRIRD++I KTAFRSRY HYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF
Sbjct: 155 IDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 214

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           +IVFID ILIYSKTEAEHEEHL +VLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV
Sbjct: 215 VIVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 274

Query: 122 SVDPAKIEAVTN 134
           SVDPAKIEAVTN
Sbjct: 275 SVDPAKIEAVTN 286

[Close]

BLAST of Cmc06g0172101 vs. NCBI nr
Match: KAA0025802.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 4.9e-61
Identity = 123/132 (93.18%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDL+SGYHQLRIRD++I KTAFRSRY HYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF
Sbjct: 155 IDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 214

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           +IVFID ILIYSKTEAEHEEHL +VLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV
Sbjct: 215 VIVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 274

Query: 122 SVDPAKIEAVTN 134
           SVDPAKIEAVTN
Sbjct: 275 SVDPAKIEAVTN 286

[Close]

BLAST of Cmc06g0172101 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.5e-23
Identity = 51/130 (39.23%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDL  G+HQ+ +   ++ KTAF +++ HYE++ M FGL NAPA F   MN + +  L+  
Sbjct: 301 IDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKH 360

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
            +V++D I+++S +  EH + L  V E L    L  +  KCEF  ++ +FLGHV++ +G+
Sbjct: 361 CLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGI 420

Query: 122 SVDPAKIEAV 132
             +P KIEA+
Sbjct: 421 KPNPEKIEAI 430

[Close]

BLAST of Cmc06g0172101 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.3e-23
Identity = 50/132 (37.88%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDL  G+HQ+ + + +I KTAF ++  HYE++ M FGL NAPA F   MN + +  L+  
Sbjct: 300 IDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKH 359

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
            +V++D I+I+S +  EH   +  V   L    L  +  KCEF  K+ +FLGH+V+ +G+
Sbjct: 360 CLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGI 419

Query: 122 SVDPAKIEAVTN 134
             +P K++A+ +
Sbjct: 420 KPNPIKVKAIVS 431

[Close]

BLAST of Cmc06g0172101 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 45/131 (34.35%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           +DL SG+HQ+ +++++I KTAF +    YEF+ + FGL NAPA+F  +++ + ++ +   
Sbjct: 217 LDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKV 276

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
             V+ID I+++S+    H ++L  VL +L    L     K  F   +V FLG++V+++G+
Sbjct: 277 CYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGI 336

Query: 122 SVDPAKIEAVT 133
             DP K+ A++
Sbjct: 337 KADPKKVRAIS 347

[Close]

BLAST of Cmc06g0172101 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-18
Identity = 46/130 (35.38%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           +DL+S YH +R+R  +  K AFR     +E++VM +G++ APA F   +N +  +  +S 
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESH 560

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           ++ ++D+ILI+SK+E+EH +H+  VL+ L+   L    +KCEF   +V F+G+ +S +G 
Sbjct: 561 VVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGF 620

Query: 122 SVDPAKIEAV 132
           +     I+ V
Sbjct: 621 TPCQENIDKV 630

[Close]

BLAST of Cmc06g0172101 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-18
Identity = 46/130 (35.38%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           +DL+S YH +R+R  +  K AFR     +E++VM +G++ APA F   +N +  +  +S 
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESH 560

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           ++ ++D ILI+SK+E+EH +H+  VL+ L+   L    +KCEF   +V F+G+ +S +G 
Sbjct: 561 VVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGF 620

Query: 122 SVDPAKIEAV 132
           +     I+ V
Sbjct: 621 TPCQENIDKV 630

[Close]

BLAST of Cmc06g0172101 vs. ExPASy TrEMBL
Match: A0A5D3DYK2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00620 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 122/132 (92.42%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDL+SGYHQLRIRD++I KTAFRSRYRHYEFI+MSFGLTNAPAVFMDLMNRVFKDFLDSF
Sbjct: 441 IDLRSGYHQLRIRDSDIPKTAFRSRYRHYEFIMMSFGLTNAPAVFMDLMNRVFKDFLDSF 500

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           IIVFID ILIYSKTE EHEEHLH+VLETLRAN+LYAKFSKCEFWLKKV FLGHVVSSEGV
Sbjct: 501 IIVFIDDILIYSKTEVEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVMFLGHVVSSEGV 560

Query: 122 SVDPAKIEAVTN 134
           SVDPAKIEAVTN
Sbjct: 561 SVDPAKIEAVTN 572

[Close]

BLAST of Cmc06g0172101 vs. ExPASy TrEMBL
Match: A0A5A7UN68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002110 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 121/132 (91.67%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDLQSGYHQLRIRD++I KTAFRSRY HYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF
Sbjct: 567 IDLQSGYHQLRIRDSDIPKTAFRSRYEHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 626

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           +IVFID ILIYSKTEAEHEEHLH+VLETLRAN+LY KFSKCEFWLKKV+FLGHVVSSEGV
Sbjct: 627 VIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYVKFSKCEFWLKKVTFLGHVVSSEGV 686

Query: 122 SVDPAKIEAVTN 134
           S+DPAKIEAVTN
Sbjct: 687 SMDPAKIEAVTN 698

[Close]

BLAST of Cmc06g0172101 vs. ExPASy TrEMBL
Match: A0A5D3CCS5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00540 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.4e-61
Identity = 123/132 (93.18%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDL+SGYHQLRIRD++I KTAFRSRY HYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF
Sbjct: 155 IDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 214

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           +IVFID ILIYSKTEAEHEEHL +VLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV
Sbjct: 215 VIVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 274

Query: 122 SVDPAKIEAVTN 134
           SVDPAKIEAVTN
Sbjct: 275 SVDPAKIEAVTN 286

[Close]

BLAST of Cmc06g0172101 vs. ExPASy TrEMBL
Match: A0A5A7SKZ1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G00520 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.4e-61
Identity = 123/132 (93.18%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 2   IDLQSGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 61
           IDL+SGYHQLRIRD++I KTAFRSRY HYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF
Sbjct: 155 IDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSF 214

Query: 62  IIVFIDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 121
           +IVFID ILIYSKTEAEHEEHL +VLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV
Sbjct: 215 VIVFIDDILIYSKTEAEHEEHLRQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGV 274

Query: 122 SVDPAKIEAVTN 134
           SVDPAKIEAVTN
Sbjct: 275 SVDPAKIEAVTN 286

[Close]

BLAST of Cmc06g0172101 vs. ExPASy TrEMBL
Match: A0A5A7TYA3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001340 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.4e-61
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 6   SGYHQLRIRDNNILKTAFRSRYRHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFIIVF 65
           SGYH+LRIRD+NI KTAFRSRYRHYEFIVMSFGLTNAP VFMDLMNRVFKDFLDSF+IVF
Sbjct: 560 SGYHKLRIRDSNIPKTAFRSRYRHYEFIVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVF 619

Query: 66  IDHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDP 125
           I+HILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDP
Sbjct: 620 INHILIYSKTEAEHEEHLHKVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDP 679

Query: 126 AKIEAVTN 134
           AKIE VTN
Sbjct: 680 AKIEMVTN 687

[Close]

BLAST of Cmc06g0172101 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 4.8e-06
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 82  HLHKVLETLRANRLYAKFSKCEFWLKKVSFLG--HVVSSEGVSVDPAKIEAV 132
           HL  VL+    ++ YA   KC F   ++++LG  H++S EGVS DPAK+EA+
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAM 54

The following BLAST results are available for this feature:

BLAST of Cmc06g0172101 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28967.1	3.7e-61	92.42	pol protein [Cucumis melo var. makuwa]	[more]
KAA0056047.1	3.7e-61	91.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0046956.1	4.9e-61	94.53	pol protein [Cucumis melo var. makuwa]	[more]
TYK09653.1	4.9e-61	93.18	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025802.1	4.9e-61	93.18	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0172101 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	5.5e-23	39.23	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	9.3e-23	37.88	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.6e-19	34.35	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q9UR07	5.3e-18	35.38	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	5.3e-18	35.38	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc06g0172101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYK2	1.8e-61	92.42	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00620 PE...	[more]
A0A5A7UN68	1.8e-61	91.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5D3CCS5	2.4e-61	93.18	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00540 PE...	[more]
A0A5A7SKZ1	2.4e-61	93.18	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G00520 PE=...	[more]
A0A5A7TYA3	2.4e-61	94.53	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001340 P...	[more]

BLAST of Cmc06g0172101 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.8e-06	44.23	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..115 e-value: 3.8E-17 score: 62.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 2..116 e-value: 2.6E-42 score: 146.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 9..41 e-value: 2.6E-42 score: 146.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..133
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..133
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..116 e-value: 3.55989E-53 score: 163.535
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0172101.1	Cmc06g0172101.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding