Cmc06g0171991 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0171991
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 27786241 .. 27786684 (-)
RNA-Seq Expression	Cmc06g0171991
Synteny	Cmc06g0171991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATTATGTGTGTGTTAGAGAAGTATCGTGATGTGATGCCCGATAGTTTGCCCAAGTTTTTGCCACCTCAAAGAATGATTGATCATGAGATCGAGTTAGTACCAGGGGCAAAACTGCCTGCGAAGAATGCTTATAGTATGGCGCCTCCAGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTATTGAATGCAGGGTTCATTACTCCTGCAAAAGCTCCGCATGGGGCCCCAATTCTTTTCCAGAAGAAGAAGGATGGAAGTTTACGATTGTGCATCGATTATCGTGTCTTGAATAAGCTCACGGTTCGCAACAAGTACTCACTTCCCATAATTACTGACTTGTTTGATCGCTTACATGAGGGGAAGTATTTTTCAAAGTTGGACTTGTAA

mRNA sequence

ATGGCCATCCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATTATGTGTGTGTTAGAGAAGTATCGTGATGTGATGCCCGATAGTTTGCCCAAGTTTTTGCCACCTCAAAGAATGATTGATCATGAGATCGAGTTAGTACCAGGGGCAAAACTGCCTGCGAAGAATGCTTATAGTATGGCGCCTCCAGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTATTGAATGCAGGGTTCATTACTCCTGCAAAAGCTCCGCATGGGGCCCCAATTCTTTTCCAGAAGAAGAAGGATGGAAGTTTACGATTGTGCATCGATTATCGTGTCTTGAATAAGCTCACGGTTCGCAACAAGTACTCACTTCCCATAATTACTGACTTGTTTGATCGCTTACATGAGGGGAAGTATTTTTCAAAGTTGGACTTGTAA

Coding sequence (CDS)

ATGGCCATCCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATTATGTGTGTGTTAGAGAAGTATCGTGATGTGATGCCCGATAGTTTGCCCAAGTTTTTGCCACCTCAAAGAATGATTGATCATGAGATCGAGTTAGTACCAGGGGCAAAACTGCCTGCGAAGAATGCTTATAGTATGGCGCCTCCAGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTATTGAATGCAGGGTTCATTACTCCTGCAAAAGCTCCGCATGGGGCCCCAATTCTTTTCCAGAAGAAGAAGGATGGAAGTTTACGATTGTGCATCGATTATCGTGTCTTGAATAAGCTCACGGTTCGCAACAAGTACTCACTTCCCATAATTACTGACTTGTTTGATCGCTTACATGAGGGGAAGTATTTTTCAAAGTTGGACTTGTAA

Protein sequence

MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKNAYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTVRNKYSLPIITDLFDRLHEGKYFSKLDL

Homology

[Close]

BLAST of Cmc06g0171991 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 9.2e-69
Identity = 133/147 (90.48%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPLNSSENSGETVPKEI+ VLEKYRDVMPDSLPK LPP+RMIDHEIELVPGAK PAKN
Sbjct: 581 MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 640

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAEL+KQLDELLNAGFI PAKAP+GAP+LFQKKKDGSLRLCIDYR LNKLTV
Sbjct: 641 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 700

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY LPIITDLFDRLH  KYFSKLDL
Sbjct: 701 RNKYPLPIITDLFDRLHGAKYFSKLDL 727

[Close]

BLAST of Cmc06g0171991 vs. NCBI nr
Match: KAA0062340.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 133/147 (90.48%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPLNSSENSGETVPKEI+ VLEKYRDVMPDSLPK LPP+RMIDHEIELVPG K PAKN
Sbjct: 611 MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGEKPPAKN 670

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAELQKQLDELLNAGFI PAKAP+GAP+LFQKKKDGSLRLCIDYRVLNKLTV
Sbjct: 671 AYRMAPPELAELQKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRVLNKLTV 730

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY L IITDLFDRLH  KYFSKLDL
Sbjct: 731 RNKYPLSIITDLFDRLHGAKYFSKLDL 757

[Close]

BLAST of Cmc06g0171991 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPL SSENSGETVPKEIM VLEKYRDVMPDSLPK LPP+RMIDHEIELVPGAK PAKN
Sbjct: 607 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 666

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAEL+KQLDELLNAGFI PAKAP+GAP+LFQ+KKDGSLRLCIDYR LNKLTV
Sbjct: 667 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 726

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY LPIITDLFDRLH  KYFSKLDL
Sbjct: 727 RNKYPLPIITDLFDRLHGAKYFSKLDL 753

[Close]

BLAST of Cmc06g0171991 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPL SSENSGETVPKEIM VLEKYRDVMPDSLPK LPP+RMIDHEIELVPGAK PAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAEL+KQLDELLNAGFI PAKAP+GAP+LFQ+KKDGSLRLCIDYR LNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY LPIITDLFDRLH  KYFSKLDL
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDL 757

[Close]

BLAST of Cmc06g0171991 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPL SSENSGETVPKEIM VLEKYRDVMPDSLPK LPP+RMIDHEIELVPGAK PAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAEL+KQLDELLNAGFI PAKAP+GAP+LFQ+KKDGSLRLCIDYR LNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY LPIITDLFDRLH  KYFSKLDL
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDL 757

[Close]

BLAST of Cmc06g0171991 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-20
Identity = 52/149 (34.90%), Postives = 84/149 (56.38%), Query Frame = 0


Query: 10  NSGETVPKEIMCVL-----EKYRDVMPDSLP------KFLPPQRMIDHEIELVPGAKLPA 69
           N+ +   K+  C L     +KYR+++ + LP        +P    + H+IE+ PGA+LP 
Sbjct: 543 NATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPR 602

Query: 70  KNAYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKL 129
              Y +      E+ K + +LL+  FI P+K+P  +P++   KKDG+ RLC+DYR LNK 
Sbjct: 603 LQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKA 662

Query: 130 TVRNKYSLPIITDLFDRLHEGKYFSKLDL 148
           T+ + + LP I +L  R+   + F+ LDL
Sbjct: 663 TISDPFPLPRIDNLLSRIGNAQIFTTLDL 687

[Close]

BLAST of Cmc06g0171991 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-20
Identity = 52/149 (34.90%), Postives = 84/149 (56.38%), Query Frame = 0


Query: 10  NSGETVPKEIMCVL-----EKYRDVMPDSLP------KFLPPQRMIDHEIELVPGAKLPA 69
           N+ +   K+  C L     +KYR+++ + LP        +P    + H+IE+ PGA+LP 
Sbjct: 569 NATDHSNKDTFCTLPVWLQQKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPR 628

Query: 70  KNAYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKL 129
              Y +      E+ K + +LL+  FI P+K+P  +P++   KKDG+ RLC+DYR LNK 
Sbjct: 629 LQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKA 688

Query: 130 TVRNKYSLPIITDLFDRLHEGKYFSKLDL 148
           T+ + + LP I +L  R+   + F+ LDL
Sbjct: 689 TISDPFPLPRIDNLLSRIGNAQIFTTLDL 713

[Close]

BLAST of Cmc06g0171991 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 41/132 (31.06%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 18  EIMCVLEKYRDVMPDSLPKFLP-PQRMIDHEIELV-PGAKLPAKNAYSMAPPELAELQKQ 77
           E+  + ++++D+  ++  + LP P + ++ E+EL     +LP +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 78  LDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTVRNKYSLPIITDLFDR 137
           +++ L +G I  +KA +  P++F  KK+G+LR+ +DY+ LNK    N Y LP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 138 LHEGKYFSKLDL 148
           +     F+KLDL
Sbjct: 493 IQGSTIFTKLDL 503

[Close]

BLAST of Cmc06g0171991 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 41/132 (31.06%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 18  EIMCVLEKYRDVMPDSLPKFLP-PQRMIDHEIELV-PGAKLPAKNAYSMAPPELAELQKQ 77
           E+  + ++++D+  ++  + LP P + ++ E+EL     +LP +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 78  LDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTVRNKYSLPIITDLFDR 137
           +++ L +G I  +KA +  P++F  KK+G+LR+ +DY+ LNK    N Y LP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 138 LHEGKYFSKLDL 148
           +     F+KLDL
Sbjct: 493 IQGSTIFTKLDL 503

[Close]

BLAST of Cmc06g0171991 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 41/132 (31.06%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 18  EIMCVLEKYRDVMPDSLPKFLP-PQRMIDHEIELV-PGAKLPAKNAYSMAPPELAELQKQ 77
           E+  + ++++D+  ++  + LP P + ++ E+EL     +LP +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 78  LDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTVRNKYSLPIITDLFDR 137
           +++ L +G I  +KA +  P++F  KK+G+LR+ +DY+ LNK    N Y LP+I  L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 138 LHEGKYFSKLDL 148
           +     F+KLDL
Sbjct: 493 IQGSTIFTKLDL 503

[Close]

BLAST of Cmc06g0171991 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.4e-69
Identity = 133/147 (90.48%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPLNSSENSGETVPKEI+ VLEKYRDVMPDSLPK LPP+RMIDHEIELVPGAK PAKN
Sbjct: 581 MAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 640

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAEL+KQLDELLNAGFI PAKAP+GAP+LFQKKKDGSLRLCIDYR LNKLTV
Sbjct: 641 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV 700

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY LPIITDLFDRLH  KYFSKLDL
Sbjct: 701 RNKYPLPIITDLFDRLHGAKYFSKLDL 727

[Close]

BLAST of Cmc06g0171991 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPL SSENSGETVPKEIM VLEKYRDVMPDSLPK LPP+RMIDHEIELVPGAK PAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAEL+KQLDELLNAGFI PAKAP+GAP+LFQ+KKDGSLRLCIDYR LNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY LPIITDLFDRLH  KYFSKLDL
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDL 757

[Close]

BLAST of Cmc06g0171991 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPL SSENSGETVPKEIM VLEKYRDVMPDSLPK LPP+RMIDHEIELVPGAK PAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAEL+KQLDELLNAGFI PAKAP+GAP+LFQ+KKDGSLRLCIDYR LNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY LPIITDLFDRLH  KYFSKLDL
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDL 757

[Close]

BLAST of Cmc06g0171991 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPL SSENSGETVPKEIM VLEKYRDVMPDSLPK LPP+RMIDHEIELVPGAK PAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAEL+KQLDELLNAGFI PAKAP+GAP+LFQ+KKDGSLRLCIDYR LNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY LPIITDLFDRLH  KYFSKLDL
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDL 757

[Close]

BLAST of Cmc06g0171991 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MAIPLNSSENSGETVPKEIMCVLEKYRDVMPDSLPKFLPPQRMIDHEIELVPGAKLPAKN 60
           MAIPL SSENSGETVPKEIM VLEKYRDVMPDSLPK LPP+RMIDHEIELVPGAK PAKN
Sbjct: 611 MAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKN 670

Query: 61  AYSMAPPELAELQKQLDELLNAGFITPAKAPHGAPILFQKKKDGSLRLCIDYRVLNKLTV 120
           AY MAPPELAEL+KQLDELLNAGFI PAKAP+GAP+LFQ+KKDGSLRLCIDYR LNKLTV
Sbjct: 671 AYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKKDGSLRLCIDYRALNKLTV 730

Query: 121 RNKYSLPIITDLFDRLHEGKYFSKLDL 148
           RNKY LPIITDLFDRLH  KYFSKLDL
Sbjct: 731 RNKYPLPIITDLFDRLHGAKYFSKLDL 757

The following BLAST results are available for this feature:

BLAST of Cmc06g0171991 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07954.1	9.2e-69	90.48	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0062340.1	3.5e-68	90.48	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067557.1	3.5e-68	89.80	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	3.5e-68	89.80	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	3.5e-68	89.80	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0171991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.8e-20	34.90	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.8e-20	34.90	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	1.8e-14	31.06	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.8e-14	31.06	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.8e-14	31.06	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0171991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9P8	4.4e-69	90.48	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C4R1	1.7e-68	89.80	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	1.7e-68	89.80	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	1.7e-68	89.80	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7T0E2	1.7e-68	89.80	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]

BLAST of Cmc06g0171991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 124..147 e-value: 1.3E-35 score: 124.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 44..123 e-value: 1.3E-35 score: 124.7
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 25..147
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 25..147
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 23..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0171991.1	Cmc06g0171991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding