Cmc06g0170061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0170061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 24905238 .. 24906341 (+)
RNA-Seq Expression	Cmc06g0170061
Synteny	Cmc06g0170061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTTGGTCTCACCAATGCCCCTGCCACCTTCTATACGTTGATGAACCAGGTCTTCAACGAATATCTCGATAAATTCGTAGTAGTCTACCTGGATGACATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTACAAAAGGTTTTTCAAAAATTGAAAGAGAATCAGCTGTATGTTAAAAGAGAAAAATGCTCTTTTGCACAAGAGCGGATAAATTTCTTGGGCCATGTGATAGAGTGTGGCCGAATTGGAATGGAAGAAGGGAAGATTGCTGCGATACGCGACTGGGCAATGCCAAAATCAATCTCGGAGTTACGCTCCTTCCTTGGGTTGGCAAATTACTATCGTCGATTTGTCCAGAGATTCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAATTGGGACCCCAAGTGCCAAGCCGCCTTCGACGGCCTAAAACAAGCCATGATGGAGGGGCCACTTCTAGGGATTACGGATGTGACCAAACCTTTCGAAGTGGAGACAGATGCGTCTGATTATGCATTGGGGGGTGTGCTCCTACAGAATGGGCACTCGATTGCATACGAAAGTCGAAAATTGAATGCAGCCGAAAGGAAGTATACTGTGTTTGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCGTTTGTAGTGAAGATGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAACAAGCAAGATGGCAGGAATTTCTGGTCGAGTTCGACTTCGAATTTGAACACAAGAAGGGGTCGAGCAACCAGGCTGCCGATGCCCTAAGTCGAAAACAAGAACATGCTGCCATATGCCTATTAGCTCACCTCCGGGGGAGCGAGATTGGCGGGTCGGCTAGAGACACCTCGAGAGAGTTTCTACAGAAGGATCATGCTGCTCAGAACGTCATGAATTTAGTGAAGGCATGCGAAACACGACAGTTTTGGGTCGAGGAAGACTTTTTAGTCACAAAGGGCAATCGACTATGTTCCAAGAGCAGGGAACTTAAGGAAGAAATTGTTGTATGA

mRNA sequence

ATGCCATTTGGTCTCACCAATGCCCCTGCCACCTTCTATACGTTGATGAACCAGGTCTTCAACGAATATCTCGATAAATTCGTAGTAGTCTACCTGGATGACATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTACAAAAGGTTTTTCAAAAATTGAAAGAGAATCAGCTGTATGTTAAAAGAGAAAAATGCTCTTTTGCACAAGAGCGGATAAATTTCTTGGGCCATGTGATAGAGTGTGGCCGAATTGGAATGGAAGAAGGGAAGATTGCTGCGATACGCGACTGGGCAATGCCAAAATCAATCTCGGAGTTACGCTCCTTCCTTGGGTTGGCAAATTACTATCGTCGATTTGTCCAGAGATTCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAATTGGGACCCCAAGTGCCAAGCCGCCTTCGACGGCCTAAAACAAGCCATGATGGAGGGGCCACTTCTAGGGATTACGGATGTGACCAAACCTTTCGAAGTGGAGACAGATGCGTCTGATTATGCATTGGGGGGTGTGCTCCTACAGAATGGGCACTCGATTGCATACGAAAGTCGAAAATTGAATGCAGCCGAAAGGAAGTATACTGTGTTTGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCGTTTGTAGTGAAGATGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAACAAGCAAGATGGCAGGAATTTCTGGTCGAGTTCGACTTCGAATTTGAACACAAGAAGGGGTCGAGCAACCAGGCTGCCGATGCCCTAAGTCGAAAACAAGAACATGCTGCCATATGCCTATTAGCTCACCTCCGGGGGAGCGAGATTGGCGGGTCGGCTAGAGACACCTCGAGAGAGTTTCTACAGAAGGATCATGCTGCTCAGAACGTCATGAATTTAGTGAAGGCATGCGAAACACGACAGTTTTGGGTCGAGGAAGACTTTTTAGTCACAAAGGGCAATCGACTATGTTCCAAGAGCAGGGAACTTAAGGAAGAAATTGTTGTATGA

Coding sequence (CDS)

ATGCCATTTGGTCTCACCAATGCCCCTGCCACCTTCTATACGTTGATGAACCAGGTCTTCAACGAATATCTCGATAAATTCGTAGTAGTCTACCTGGATGACATAGTGGTCTATAGTACGACCATGGAGGAACATAGAGACCACCTACAAAAGGTTTTTCAAAAATTGAAAGAGAATCAGCTGTATGTTAAAAGAGAAAAATGCTCTTTTGCACAAGAGCGGATAAATTTCTTGGGCCATGTGATAGAGTGTGGCCGAATTGGAATGGAAGAAGGGAAGATTGCTGCGATACGCGACTGGGCAATGCCAAAATCAATCTCGGAGTTACGCTCCTTCCTTGGGTTGGCAAATTACTATCGTCGATTTGTCCAGAGATTCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAATTGGGACCCCAAGTGCCAAGCCGCCTTCGACGGCCTAAAACAAGCCATGATGGAGGGGCCACTTCTAGGGATTACGGATGTGACCAAACCTTTCGAAGTGGAGACAGATGCGTCTGATTATGCATTGGGGGGTGTGCTCCTACAGAATGGGCACTCGATTGCATACGAAAGTCGAAAATTGAATGCAGCCGAAAGGAAGTATACTGTGTTTGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCGTTTGTAGTGAAGATGGACAACAGTGCAACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAACAAGCAAGATGGCAGGAATTTCTGGTCGAGTTCGACTTCGAATTTGAACACAAGAAGGGGTCGAGCAACCAGGCTGCCGATGCCCTAAGTCGAAAACAAGAACATGCTGCCATATGCCTATTAGCTCACCTCCGGGGGAGCGAGATTGGCGGGTCGGCTAGAGACACCTCGAGAGAGTTTCTACAGAAGGATCATGCTGCTCAGAACGTCATGAATTTAGTGAAGGCATGCGAAACACGACAGTTTTGGGTCGAGGAAGACTTTTTAGTCACAAAGGGCAATCGACTATGTTCCAAGAGCAGGGAACTTAAGGAAGAAATTGTTGTATGA

Protein sequence

MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYRRFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETDASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVKMDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSARDTSREFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRLCSKSRELKEEIVV

Homology

[Close]

BLAST of Cmc06g0170061 vs. NCBI nr
Match: KAA0060483.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 706.8 bits (1823), Expect = 9.6e-200
Identity = 348/350 (99.43%), Postives = 349/350 (99.71%), Query Frame = 0


Query: 17  NQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERIN 76
           + VFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERIN
Sbjct: 10  DMVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERIN 69

Query: 77  FLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYRRFVQRFSKRASPLTEL 136
           FLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYRRFVQRFSKRASPLTEL
Sbjct: 70  FLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYRRFVQRFSKRASPLTEL 129

Query: 137 LKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETDASDYALGGVLLQNGHS 196
           LKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETDASDYALGGVLLQNGHS
Sbjct: 130 LKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETDASDYALGGVLLQNGHS 189

Query: 197 IAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVKMDNSATCHFFTQPKLT 256
           IAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVKMDNSATCHFFTQPKLT
Sbjct: 190 IAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVKMDNSATCHFFTQPKLT 249

Query: 257 SKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSARDTSR 316
           SKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSARDTSR
Sbjct: 250 SKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSARDTSR 309

Query: 317 EFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRLCSKSRELKEEIV 367
           EFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRLCSKSRELKEEIV
Sbjct: 310 EFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRLCSKSRELKEEIV 359

[Close]

BLAST of Cmc06g0170061 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 681.8 bits (1758), Expect = 3.3e-192
Identity = 334/354 (94.35%), Postives = 342/354 (96.61%), Query Frame = 0


Query: 1    MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATF TLMNQVF+EYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 758  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 817

Query: 61   LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
            LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKS+SELRSFLGLANYYR
Sbjct: 818  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 877

Query: 121  RFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETD 180
            RFV+ FSKRASPLTELLKKDVHWNWDP+CQAAFDGLKQA+MEGPLLGI DVTKPFEVETD
Sbjct: 878  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDGLKQALMEGPLLGIADVTKPFEVETD 937

Query: 181  ASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVK 240
            ASDYALGGVLLQNGH IAYESRKLNAAER+YTV EKEMLAVVHCLRAWRQYLLGSSFVVK
Sbjct: 938  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVK 997

Query: 241  MDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 300
             DNSATCHFFTQPKLTSKQARWQEFL EFDFEFEHKKGSSNQAADALSRKQEHAAICLLA
Sbjct: 998  TDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 1057

Query: 301  HLRGSEIGGSARDTSREFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRL 355
            HL+GSEIGGS RDT REFLQKDHAAQNVMNL KA +TRQFWVEED LVTKGNRL
Sbjct: 1058 HLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 1111

[Close]

BLAST of Cmc06g0170061 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 680.2 bits (1754), Expect = 9.6e-192
Identity = 333/354 (94.07%), Postives = 341/354 (96.33%), Query Frame = 0


Query: 1    MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATF TLMNQVF+EYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 784  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 843

Query: 61   LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
            LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKS+SELRSFLGLANYYR
Sbjct: 844  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 903

Query: 121  RFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETD 180
            RFV+ FSKRASPLTELLKKDVHWNWDP+CQ AFDGLKQA+MEGPLLGI DVTKPFEVETD
Sbjct: 904  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 963

Query: 181  ASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVK 240
            ASDYALGGVLLQNGH IAYESRKLNAAER+YTV EKEMLAVVHCLRAWRQYLLGSSFVVK
Sbjct: 964  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVK 1023

Query: 241  MDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 300
             DNSATCHFFTQPKLTSKQARWQEFL EFDFEFEHKKGSSNQAADALSRKQEHAAICLLA
Sbjct: 1024 TDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 1083

Query: 301  HLRGSEIGGSARDTSREFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRL 355
            HL+GSEIGGS RDT REFLQKDHAAQNVMNL KA +TRQFWVEED LVTKGNRL
Sbjct: 1084 HLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 1137

[Close]

BLAST of Cmc06g0170061 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 680.2 bits (1754), Expect = 9.6e-192
Identity = 333/354 (94.07%), Postives = 341/354 (96.33%), Query Frame = 0


Query: 1    MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATF TLMNQVF+EYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
            LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKS+SELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETD 180
            RFV+ FSKRASPLTELLKKDVHWNWDP+CQ AFDGLKQA+MEGPLLGI DVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVK 240
            ASDYALGGVLLQNGH IAYESRKLNAAER+YTV EKEMLAVVHCLRAWRQYLLGSSFVVK
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVK 1027

Query: 241  MDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 300
             DNSATCHFFTQPKLTSKQARWQEFL EFDFEFEHKKGSSNQAADALSRKQEHAAICLLA
Sbjct: 1028 TDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 1087

Query: 301  HLRGSEIGGSARDTSREFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRL 355
            HL+GSEIGGS RDT REFLQKDHAAQNVMNL KA +TRQFWVEED LVTKGNRL
Sbjct: 1088 HLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 1141

[Close]

BLAST of Cmc06g0170061 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 680.2 bits (1754), Expect = 9.6e-192
Identity = 333/354 (94.07%), Postives = 341/354 (96.33%), Query Frame = 0


Query: 1    MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATF TLMNQVF+EYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
            LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKS+SELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETD 180
            RFV+ FSKRASPLTELLKKDVHWNWDP+CQ AFDGLKQA+MEGPLLGI DVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVK 240
            ASDYALGGVLLQNGH IAYESRKLNAAER+YTV EKEMLAVVHCLRAWRQYLLGSSFVVK
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVK 1027

Query: 241  MDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 300
             DNSATCHFFTQPKLTSKQARWQEFL EFDFEFEHKKGSSNQAADALSRKQEHAAICLLA
Sbjct: 1028 TDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 1087

Query: 301  HLRGSEIGGSARDTSREFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRL 355
            HL+GSEIGGS RDT REFLQKDHAAQNVMNL KA +TRQFWVEED LVTKGNRL
Sbjct: 1088 HLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 1141

[Close]

BLAST of Cmc06g0170061 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 7.4e-62
Identity = 125/290 (43.10%), Postives = 177/290 (61.03%), Query Frame = 0


Query: 1   MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MPFGL NAPATF   MN +    L+K  +VYLDDI+V+ST+++EH   L  VF+KL +  
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
           L ++ +KC F ++   FLGHV+    I     KI AI+ + +P    E+++FLGL  YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVQRFSKRASPLTELLKKDVHWN-WDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVET 180
           +F+  F+  A P+T+ LKK++  +  +P+  +AF  LK  + E P+L + D TK F + T
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVV 240
           DASD ALG VL Q+GH ++Y SR LN  E  Y+  EKE+LA+V   + +R YLLG  F +
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

Query: 241 KMDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSR 290
             D+      +      SK  RW+  L EFDF+ ++ KG  N  ADALSR
Sbjct: 574 SSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc06g0170061 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.4e-57
Identity = 117/290 (40.34%), Postives = 171/290 (58.97%), Query Frame = 0


Query: 1   MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MPFGL NAPATF   MN +    L+K  +VYLDDI+++ST++ EH + +Q VF KL +  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
           L ++ +KC F ++  NFLGH++    I     K+ AI  + +P    E+R+FLGL  YYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVQRFSKRASPLTELLKKDVHWNWDP-KCQAAFDGLKQAMMEGPLLGITDVTKPFEVET 180
           +F+  ++  A P+T  LKK    +    +   AF+ LK  ++  P+L + D  K F + T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVV 240
           DAS+ ALG VL QNGH I++ SR LN  E  Y+  EKE+LA+V   + +R YLLG  F++
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

Query: 241 KMDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSR 290
             D+          +  +K  RW+  L E+ F+ ++ KG  N  ADALSR
Sbjct: 573 ASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Cmc06g0170061 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.7e-54
Identity = 117/300 (39.00%), Postives = 172/300 (57.33%), Query Frame = 0


Query: 1   MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MP+G++ APA F   +N +  E  +  VV Y+DDI+++S +  EH  H++ V QKLK   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKREKCSFAQERINFLG-HVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYY 120
           L + + KC F Q ++ F+G H+ E G    +E  I  +  W  PK+  ELR FLG  NY 
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQE-NIDKVLQWKQPKNRKELRQFLGSVNYL 653

Query: 121 RRFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVET 180
           R+F+ + S+   PL  LLKKDV W W P    A + +KQ ++  P+L   D +K   +ET
Sbjct: 654 RKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLET 713

Query: 181 DASDYALGGVLLQNG-----HSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLG 240
           DASD A+G VL Q       + + Y S K++ A+  Y+V +KEMLA++  L+ WR YL  
Sbjct: 714 DASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLES 773

Query: 241 S--SFVVKMDNSATCHFFT---QPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSR 290
           +   F +  D+       T   +P+   + ARWQ FL +F+FE  ++ GS+N  ADALSR
Sbjct: 774 TIEPFKILTDHRNLIGRITNESEPE-NKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of Cmc06g0170061 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.7e-54
Identity = 117/300 (39.00%), Postives = 172/300 (57.33%), Query Frame = 0


Query: 1   MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MP+G++ APA F   +N +  E  +  VV Y+DDI+++S +  EH  H++ V QKLK   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKREKCSFAQERINFLG-HVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYY 120
           L + + KC F Q ++ F+G H+ E G    +E  I  +  W  PK+  ELR FLG  NY 
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQE-NIDKVLQWKQPKNRKELRQFLGSVNYL 653

Query: 121 RRFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVET 180
           R+F+ + S+   PL  LLKKDV W W P    A + +KQ ++  P+L   D +K   +ET
Sbjct: 654 RKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLET 713

Query: 181 DASDYALGGVLLQNG-----HSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLG 240
           DASD A+G VL Q       + + Y S K++ A+  Y+V +KEMLA++  L+ WR YL  
Sbjct: 714 DASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLES 773

Query: 241 S--SFVVKMDNSATCHFFT---QPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSR 290
           +   F +  D+       T   +P+   + ARWQ FL +F+FE  ++ GS+N  ADALSR
Sbjct: 774 TIEPFKILTDHRNLIGRITNESEPE-NKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of Cmc06g0170061 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.7e-54
Identity = 117/300 (39.00%), Postives = 172/300 (57.33%), Query Frame = 0


Query: 1   MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
           MP+G++ APA F   +N +  E  +  VV Y+DDI+++S +  EH  H++ V QKLK   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYVKREKCSFAQERINFLG-HVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYY 120
           L + + KC F Q ++ F+G H+ E G    +E  I  +  W  PK+  ELR FLG  NY 
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQE-NIDKVLQWKQPKNRKELRQFLGSVNYL 653

Query: 121 RRFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVET 180
           R+F+ + S+   PL  LLKKDV W W P    A + +KQ ++  P+L   D +K   +ET
Sbjct: 654 RKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLET 713

Query: 181 DASDYALGGVLLQNG-----HSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLG 240
           DASD A+G VL Q       + + Y S K++ A+  Y+V +KEMLA++  L+ WR YL  
Sbjct: 714 DASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLES 773

Query: 241 S--SFVVKMDNSATCHFFT---QPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSR 290
           +   F +  D+       T   +P+   + ARWQ FL +F+FE  ++ GS+N  ADALSR
Sbjct: 774 TIEPFKILTDHRNLIGRITNESEPE-NKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831

[Close]

BLAST of Cmc06g0170061 vs. ExPASy TrEMBL
Match: A0A5A7UWX1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G003160 PE=4 SV=1)

HSP 1 Score: 706.8 bits (1823), Expect = 4.6e-200
Identity = 348/350 (99.43%), Postives = 349/350 (99.71%), Query Frame = 0


Query: 17  NQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERIN 76
           + VFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERIN
Sbjct: 10  DMVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQLYVKREKCSFAQERIN 69

Query: 77  FLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYRRFVQRFSKRASPLTEL 136
           FLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYRRFVQRFSKRASPLTEL
Sbjct: 70  FLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYRRFVQRFSKRASPLTEL 129

Query: 137 LKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETDASDYALGGVLLQNGHS 196
           LKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETDASDYALGGVLLQNGHS
Sbjct: 130 LKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETDASDYALGGVLLQNGHS 189

Query: 197 IAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVKMDNSATCHFFTQPKLT 256
           IAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVKMDNSATCHFFTQPKLT
Sbjct: 190 IAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVKMDNSATCHFFTQPKLT 249

Query: 257 SKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSARDTSR 316
           SKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSARDTSR
Sbjct: 250 SKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLAHLRGSEIGGSARDTSR 309

Query: 317 EFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRLCSKSRELKEEIV 367
           EFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRLCSKSRELKEEIV
Sbjct: 310 EFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRLCSKSRELKEEIV 359

[Close]

BLAST of Cmc06g0170061 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 681.8 bits (1758), Expect = 1.6e-192
Identity = 334/354 (94.35%), Postives = 342/354 (96.61%), Query Frame = 0


Query: 1    MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATF TLMNQVF+EYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 758  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 817

Query: 61   LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
            LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKS+SELRSFLGLANYYR
Sbjct: 818  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 877

Query: 121  RFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETD 180
            RFV+ FSKRASPLTELLKKDVHWNWDP+CQAAFDGLKQA+MEGPLLGI DVTKPFEVETD
Sbjct: 878  RFVEGFSKRASPLTELLKKDVHWNWDPECQAAFDGLKQALMEGPLLGIADVTKPFEVETD 937

Query: 181  ASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVK 240
            ASDYALGGVLLQNGH IAYESRKLNAAER+YTV EKEMLAVVHCLRAWRQYLLGSSFVVK
Sbjct: 938  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVK 997

Query: 241  MDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 300
             DNSATCHFFTQPKLTSKQARWQEFL EFDFEFEHKKGSSNQAADALSRKQEHAAICLLA
Sbjct: 998  TDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 1057

Query: 301  HLRGSEIGGSARDTSREFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRL 355
            HL+GSEIGGS RDT REFLQKDHAAQNVMNL KA +TRQFWVEED LVTKGNRL
Sbjct: 1058 HLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 1111

[Close]

BLAST of Cmc06g0170061 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 680.2 bits (1754), Expect = 4.6e-192
Identity = 333/354 (94.07%), Postives = 341/354 (96.33%), Query Frame = 0


Query: 1    MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATF TLMNQVF+EYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
            LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKS+SELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETD 180
            RFV+ FSKRASPLTELLKKDVHWNWDP+CQ AFDGLKQA+MEGPLLGI DVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVK 240
            ASDYALGGVLLQNGH IAYESRKLNAAER+YTV EKEMLAVVHCLRAWRQYLLGSSFVVK
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVK 1027

Query: 241  MDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 300
             DNSATCHFFTQPKLTSKQARWQEFL EFDFEFEHKKGSSNQAADALSRKQEHAAICLLA
Sbjct: 1028 TDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 1087

Query: 301  HLRGSEIGGSARDTSREFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRL 355
            HL+GSEIGGS RDT REFLQKDHAAQNVMNL KA +TRQFWVEED LVTKGNRL
Sbjct: 1088 HLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 1141

[Close]

BLAST of Cmc06g0170061 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 680.2 bits (1754), Expect = 4.6e-192
Identity = 333/354 (94.07%), Postives = 341/354 (96.33%), Query Frame = 0


Query: 1    MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATF TLMNQVF+EYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
            LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKS+SELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETD 180
            RFV+ FSKRASPLTELLKKDVHWNWDP+CQ AFDGLKQA+MEGPLLGI DVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVK 240
            ASDYALGGVLLQNGH IAYESRKLNAAER+YTV EKEMLAVVHCLRAWRQYLLGSSFVVK
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVK 1027

Query: 241  MDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 300
             DNSATCHFFTQPKLTSKQARWQEFL EFDFEFEHKKGSSNQAADALSRKQEHAAICLLA
Sbjct: 1028 TDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 1087

Query: 301  HLRGSEIGGSARDTSREFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRL 355
            HL+GSEIGGS RDT REFLQKDHAAQNVMNL KA +TRQFWVEED LVTKGNRL
Sbjct: 1088 HLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 1141

[Close]

BLAST of Cmc06g0170061 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 680.2 bits (1754), Expect = 4.6e-192
Identity = 333/354 (94.07%), Postives = 341/354 (96.33%), Query Frame = 0


Query: 1    MPFGLTNAPATFYTLMNQVFNEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 60
            MPFGLTNAPATF TLMNQVF+EYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ
Sbjct: 788  MPFGLTNAPATFCTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHLQKVFQKLKENQ 847

Query: 61   LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSISELRSFLGLANYYR 120
            LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKS+SELRSFLGLANYYR
Sbjct: 848  LYVKREKCSFAQERINFLGHVIECGRIGMEEGKIAAIRDWAMPKSVSELRSFLGLANYYR 907

Query: 121  RFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGPLLGITDVTKPFEVETD 180
            RFV+ FSKRASPLTELLKKDVHWNWDP+CQ AFDGLKQA+MEGPLLGI DVTKPFEVETD
Sbjct: 908  RFVEGFSKRASPLTELLKKDVHWNWDPECQTAFDGLKQALMEGPLLGIADVTKPFEVETD 967

Query: 181  ASDYALGGVLLQNGHSIAYESRKLNAAERKYTVFEKEMLAVVHCLRAWRQYLLGSSFVVK 240
            ASDYALGGVLLQNGH IAYESRKLNAAER+YTV EKEMLAVVHCLRAWRQYLLGSSFVVK
Sbjct: 968  ASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVK 1027

Query: 241  MDNSATCHFFTQPKLTSKQARWQEFLVEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 300
             DNSATCHFFTQPKLTSKQARWQEFL EFDFEFEHKKGSSNQAADALSRKQEHAAICLLA
Sbjct: 1028 TDNSATCHFFTQPKLTSKQARWQEFLAEFDFEFEHKKGSSNQAADALSRKQEHAAICLLA 1087

Query: 301  HLRGSEIGGSARDTSREFLQKDHAAQNVMNLVKACETRQFWVEEDFLVTKGNRL 355
            HL+GSEIGGS RDT REFLQKDHAAQNVMNL KA +TRQFWVEED LVTKGNRL
Sbjct: 1088 HLQGSEIGGSVRDTLREFLQKDHAAQNVMNLAKAGKTRQFWVEEDLLVTKGNRL 1141

[Close]

BLAST of Cmc06g0170061 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-22
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 47  DHLQKVFQKLKENQLYVKREKCSFAQERINFLG--HVIECGRIGMEEGKIAAIRDWAMPK 106
           +HL  V Q  +++Q Y  R+KC+F Q +I +LG  H+I    +  +  K+ A+  W  PK
Sbjct: 2   NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPK 61

Query: 107 SISELRSFLGLANYYRRFVQRFSKRASPLTELLKKDVHWNWDPKCQAAFDGLKQAMMEGP 166
           + +ELR FLGL  YYRRFV+ + K   PLTELLKK+    W      AF  LK A+   P
Sbjct: 62  NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLP 121

Query: 167 LLGITDVTKPF 176
           +L + D+  PF
Sbjct: 122 VLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc06g0170061 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060483.1	9.6e-200	99.43	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK07954.1	3.3e-192	94.35	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	9.6e-192	94.07	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	9.6e-192	94.07	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	9.6e-192	94.07	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0170061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	7.4e-62	43.10	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	9.4e-57	40.34	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	9.7e-54	39.00	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	9.7e-54	39.00	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	9.7e-54	39.00	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0170061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWX1	4.6e-200	99.43	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5D3C9P8	1.6e-192	94.35	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C4R1	4.6e-192	94.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	4.6e-192	94.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	4.6e-192	94.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

BLAST of Cmc06g0170061 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.6e-22	41.22	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 358..367
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 1..278
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..278
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.05581E-39 score: 136.956
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 176..290 e-value: 1.44405E-56 score: 178.84
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 1.7E-34 score: 120.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..180 e-value: 4.1E-28 score: 99.2
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 145..239 e-value: 5.5E-32 score: 109.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 181..299 e-value: 4.6E-5 score: 25.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 3.0E-19 score: 69.4
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 14.061864
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0170061.1	Cmc06g0170061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding