Cmc06g0170001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0170001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	CACTA en-spm transposon protein
Location	CMiso1.1chr06: 24772341 .. 24773575 (+)
RNA-Seq Expression	Cmc06g0170001
Synteny	Cmc06g0170001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACAGGTACTATGTCATCATTTCCCATTTGTTTTCAAGAGACAGATGATCTGTTTCTGAAGTTCGGAGACGTTCTAAATAACAATAACATGGGATCATCCTCGGTGAGCAACATTTCAGGTTAGTCCCATTACTTTGATGATAATTCTGAACATATAGAGTTGTATTTCTGATAGTTTTTTGTTTTCTTAGATGACTCTCAACCCACTCCCACTCCTAGAAGACGTCAATACTCCCAAAACATGGAGTTGGAGAGATATGTCCAAAAGAATGGGAAGATTTCGATTACCATTGCCCCAAGAGTGAAGAAACCAACCTCTCCACATTCTATTCAGTTCAGCAACACTATTGGTGTATGTATAGATTTCAAGTCCGCTGCTTAAGTGGGCTGGTGTTCTACCAGAATATATCAAGGTGGTCAAAGGCACTCTATAGGTAAGTAGTAATTTATTCCATTTATTTTAAATGTACATATGTATAAACCTAGCTAATCCATATGTTCTTTAATTTGTAGCGCTATTTCATGCTTTATTTCACATATCAAGCACTTGATAGATTTTGTGGACATCAAATGCTCACATCTTTCAAGGAGTTTAGGGGAGACTGCCATAGACATTTTAAAAAGTAAGACCCTGAACAAGCATGTACCAACCCACCGCACAATTGGTGAATCGTCTGGAAGATTGGCATTTCCTATACGATTATTACTTAAGTCGAGCATTTCAAGTGGCTTACATATTGTAATGTTACTTCACATTACATTTTTTTGTATGCATGTATATTTTTTTAAAAATGCTTACATGTAGGAGCAATCAAGGACCAACAAGGTTGCTAAACTTGAATAACCTTACAATCATAATAACAGATTCAAGTCGTTCCTACAATGACAGCATGAACTCACTGAAGAACGGGGTCAGCCAGTGGGATGTGTGAATTTGTTTAGAGAAACACACGCCAATAGGAGTGGCCAATTCATTTCACATACGGCCATGAACGCGCATGTAAGTTTATGGTTTATTTTGTTTTATTTTCTACATTTAATTGTGAGTTCATAACTTAAAACTGTTGGTGCAGAATCAAATGCTGGAACTCCAGTCCCAACCCACCTTAGAAGGTTCTCAACCACTATTCGGGGACGAGATATGCAAGACCATCTGTCTCTTGAAAATCAATGGGGCCCCAAGCCTAAGTCTCGAAAGAGTGGTAGCAGTTTTTCATCTTCATATTCGCG

mRNA sequence

ATGTCCACAGGTACTATGTCATCATTTCCCATTTGTTTTCAAGAGACAGATGATCTGTTTCTGAAGTTCGGAGACGTTCTAAATAACAATAACATGGGATCATCCTCGGTGAGCAACATTTCAGATGACTCTCAACCCACTCCCACTCCTAGAAGACGTCAATACTCCCAAAACATGGAGTTGGAGAGATATGTCCAAAAGAATGGGAAGATTTCGATTACCATTGCCCCAAGAGTGAAGAAACCAACCTCTCCACATTCTATTCAGTTCAGCAACACTATTGGTGTATGTATAGATTTCAAGTCCGCTGCTTAAGTGGGCTGGTGTTCTACCAGAATATATCAAGGTGGTCAAAGGCACTCTATAGATTCAAGTCGTTCCTACAATGACAGCATGAACTCACTGAAGAACGGGGTCAGCCAGTGGGATGTGTGAATTTGTTTAGAGAAACACACGCCAATAGGAGTGGCCAATTCATTTCACATACGGCCATGAACGCGCATAATCAAATGCTGGAACTCCAGTCCCAACCCACCTTAGAAGGTTCTCAACCACTATTCGGGGACGAGATATGCAAGACCATCTGTCTCTTGAAAATCAATGGGGCCCCAAGCCTAAGTCTCGAAAGAGTGGTAGCAGTTTTTCATCTTCATATTCGCG

Coding sequence (CDS)

ATGTCCACAGGTACTATGTCATCATTTCCCATTTGTTTTCAAGAGACAGATGATCTGTTTCTGAAGTTCGGAGACGTTCTAAATAACAATAACATGGGATCATCCTCGGTGAGCAACATTTCAGATGACTCTCAACCCACTCCCACTCCTAGAAGACGTCAATACTCCCAAAACATGGAGTTGGAGAGATATGTCCAAAAGAATGGGAAGATTTCGATTACCATTGCCCCAAGAGTGAAGAAACCAACCTCTCCACATTCTATTCAGTTCAGCAACACTATTGGTGTATGTATAGATTTCAAGTCCGCTGCTTAA

Protein sequence

MSTGTMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNMELERYVQKNGKISITIAPRVKKPTSPHSIQFSNTIGVCIDFKSAA

Homology

[Close]

BLAST of Cmc06g0170001 vs. NCBI nr
Match: KAA0060467.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18552.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 2.5e-44
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1   MSTGTMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME 60
           +S GTMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME
Sbjct: 21  LSVGTMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME 80

Query: 61  LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTIG 96
           LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTIG
Sbjct: 81  LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTIG 115

[Close]

BLAST of Cmc06g0170001 vs. NCBI nr
Match: TYK24203.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 5   TMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNMELERY 64
           TMSSFP  FQET DLFL+F DV NN  +   SV + S + QPT TPRRRQ+SQN+ELERY
Sbjct: 13  TMSSFPSGFQETGDLFLEFNDVFNNVEL--FSVGDTSAEPQPTCTPRRRQHSQNLELERY 72

Query: 65  VQKNGKISITIAPRVKKPTSPHSIQFSNTIGVC--IDFKSAA 105
           +QKNGKI I+IAPR KKP S H ++F+N I V   I F+SAA
Sbjct: 73  IQKNGKIPISIAPRAKKPISLHVVRFNNIIVVLTWIHFQSAA 112

[Close]

BLAST of Cmc06g0170001 vs. NCBI nr
Match: KAA0033005.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK03414.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 49/98 (50.00%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 1   MSTGTMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME 60
           MST  MSSFP  F+ET+ +F++FG  +N     SS+  N ++ +QP PTPRR Q S+ +E
Sbjct: 48  MSTSIMSSFPSSFEETNQMFIEFGMDINIAKGLSSADENSAESTQPPPTPRRSQQSRLLE 107

Query: 61  LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTIGVCI 99
           LERYV  NG+I ++IA   KKP SPH+++FS  IG+C+
Sbjct: 108 LERYVHTNGRIPMSIALGAKKPISPHAVRFSQAIGMCV 145

[Close]

BLAST of Cmc06g0170001 vs. NCBI nr
Match: KAA0057456.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK30155.1 (R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 7.5e-17
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 5   TMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNMELERY 64
           TMSSF   F+ETD LFL+FGD  NN   GSSSV + SD++QP+ TPRRRQ S+ ++LERY
Sbjct: 82  TMSSFLSGFEETDALFLEFGDKFNNTG-GSSSVDDNSDETQPSLTPRRRQQSRLLKLERY 141

Query: 65  VQKNGKISITIAPRVKKPTSPHSIQFSNT 94
           V KNGKI I IA   +KP SPH+I+FS +
Sbjct: 142 VFKNGKILIVIALGAEKPISPHAIRFSQS 169

[Close]

BLAST of Cmc06g0170001 vs. NCBI nr
Match: KAA0057166.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27149.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 9.8e-17
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 2   STGTMSSF-PICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME 61
           S G  ++F  +  +ETDDLFL+F D    NN+GSS V N  DDSQ  P+PRRRQ+ QN+E
Sbjct: 32  SRGAYNNFYGVLDEETDDLFLEFDDAF--NNIGSSLVGNTLDDSQ--PSPRRRQHFQNLE 91

Query: 62  LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTI 95
           LERYVQKN KI I+IAP VKK  SPH + F NTI
Sbjct: 92  LERYVQKNRKILISIAPGVKKSISPHVVWFKNTI 121

[Close]

BLAST of Cmc06g0170001 vs. ExPASy TrEMBL
Match: A0A5A7V0Y7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00540 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1   MSTGTMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME 60
           +S GTMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME
Sbjct: 21  LSVGTMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME 80

Query: 61  LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTIG 96
           LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTIG
Sbjct: 81  LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTIG 115

[Close]

BLAST of Cmc06g0170001 vs. ExPASy TrEMBL
Match: A0A5D3DKP3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00030 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 5   TMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNMELERY 64
           TMSSFP  FQET DLFL+F DV NN  +   SV + S + QPT TPRRRQ+SQN+ELERY
Sbjct: 13  TMSSFPSGFQETGDLFLEFNDVFNNVEL--FSVGDTSAEPQPTCTPRRRQHSQNLELERY 72

Query: 65  VQKNGKISITIAPRVKKPTSPHSIQFSNTIGVC--IDFKSAA 105
           +QKNGKI I+IAPR KKP S H ++F+N I V   I F+SAA
Sbjct: 73  IQKNGKIPISIAPRAKKPISLHVVRFNNIIVVLTWIHFQSAA 112

[Close]

BLAST of Cmc06g0170001 vs. ExPASy TrEMBL
Match: A0A5D3BWA8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00120 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.6e-18
Identity = 49/98 (50.00%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 1   MSTGTMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME 60
           MST  MSSFP  F+ET+ +F++FG  +N     SS+  N ++ +QP PTPRR Q S+ +E
Sbjct: 48  MSTSIMSSFPSSFEETNQMFIEFGMDINIAKGLSSADENSAESTQPPPTPRRSQQSRLLE 107

Query: 61  LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTIGVCI 99
           LERYV  NG+I ++IA   KKP SPH+++FS  IG+C+
Sbjct: 108 LERYVHTNGRIPMSIALGAKKPISPHAVRFSQAIGMCV 145

[Close]

BLAST of Cmc06g0170001 vs. ExPASy TrEMBL
Match: A0A5A7UTI9 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001400 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-17
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 5   TMSSFPICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNMELERY 64
           TMSSF   F+ETD LFL+FGD  NN   GSSSV + SD++QP+ TPRRRQ S+ ++LERY
Sbjct: 82  TMSSFLSGFEETDALFLEFGDKFNNTG-GSSSVDDNSDETQPSLTPRRRQQSRLLKLERY 141

Query: 65  VQKNGKISITIAPRVKKPTSPHSIQFSNT 94
           V KNGKI I IA   +KP SPH+I+FS +
Sbjct: 142 VFKNGKILIVIALGAEKPISPHAIRFSQS 169

[Close]

BLAST of Cmc06g0170001 vs. ExPASy TrEMBL
Match: A0A5A7USM7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00280 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.8e-17
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 2   STGTMSSF-PICFQETDDLFLKFGDVLNNNNMGSSSVSNISDDSQPTPTPRRRQYSQNME 61
           S G  ++F  +  +ETDDLFL+F D    NN+GSS V N  DDSQ  P+PRRRQ+ QN+E
Sbjct: 32  SRGAYNNFYGVLDEETDDLFLEFDDAF--NNIGSSLVGNTLDDSQ--PSPRRRQHFQNLE 91

Query: 62  LERYVQKNGKISITIAPRVKKPTSPHSIQFSNTI 95
           LERYVQKN KI I+IAP VKK  SPH + F NTI
Sbjct: 92  LERYVQKNRKILISIAPGVKKSISPHVVWFKNTI 121

The following BLAST results are available for this feature:

BLAST of Cmc06g0170001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060467.1	2.5e-44	97.89	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18552.1 CACTA en-...	[more]
TYK24203.1	5.9e-22	62.75	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0033005.1	2.0e-17	50.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK03414.1 CACTA en-...	[more]
KAA0057456.1	7.5e-17	60.67	(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK30155.1 (R)-mande...	[more]
KAA0057166.1	9.8e-17	59.57	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27149.1 CACTA en-...	[more]

BLAST of Cmc06g0170001 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc06g0170001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0Y7	1.2e-44	97.89	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3DKP3	2.9e-22	62.75	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BWA8	9.6e-18	50.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UTI9	3.6e-17	60.67	(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7USM7	4.8e-17	59.57	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Cmc06g0170001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0170001.1	Cmc06g0170001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008233	peptidase activity