Cmc06g0168301 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0168301
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr06: 22010939 .. 22011424 (+)
RNA-Seq Expression	Cmc06g0168301
Synteny	Cmc06g0168301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCATGTATTCAAGCCATATTTGCGGAGGTTTGTTCTTGTATTTTTTGACGACATTTTAGTCTATAGTCAAGGGTTGATTGAACATGTGCATCACTTGGAGGTGGTCTTAGGATTGCTGAAGGAGAATGAGTTATACGTGAACCTGGAGAAGTGCAGCTTTGCCAAGCCACGAACTGGGTACTTAGGCCACTTTATATCGGAGGAAGGCATAGAGGTGGACCCAGAAAAGATCAGGGTTATCAAGGAATGGCCGGTACCCACCAACGTGCGGGAAATGCGTGGATTCTTGGGACTGACAGGCTACTACCGGCGGTTTATTAAAGACTACGGTACTATGGCCGCCTCCCTGACCCTGCTGTTAATGACGGGAGGTTACAAATGGAATAAGGAGGCAGAGGTCGCCTTTGAAAAACTGAAAATGGACATGATGACACTCCCCGCGTTGACCATGCCTGGCTTTCACCTGCCTTTTGAGATTTAG

mRNA sequence

ATGAATCATGTATTCAAGCCATATTTGCGGAGGTTTGTTCTTGTATTTTTTGACGACATTTTAGTCTATAGTCAAGGGTTGATTGAACATGTGCATCACTTGGAGGTGGTCTTAGGATTGCTGAAGGAGAATGAGTTATACGTGAACCTGGAGAAGTGCAGCTTTGCCAAGCCACGAACTGGGTACTTAGGCCACTTTATATCGGAGGAAGGCATAGAGGTGGACCCAGAAAAGATCAGGGTTATCAAGGAATGGCCGGTACCCACCAACGTGCGGGAAATGCGTGGATTCTTGGGACTGACAGGCTACTACCGGCGGTTTATTAAAGACTACGGTACTATGGCCGCCTCCCTGACCCTGCTGTTAATGACGGGAGGTTACAAATGGAATAAGGAGGCAGAGGTCGCCTTTGAAAAACTGAAAATGGACATGATGACACTCCCCGCGTTGACCATGCCTGGCTTTCACCTGCCTTTTGAGATTTAG

Coding sequence (CDS)

ATGAATCATGTATTCAAGCCATATTTGCGGAGGTTTGTTCTTGTATTTTTTGACGACATTTTAGTCTATAGTCAAGGGTTGATTGAACATGTGCATCACTTGGAGGTGGTCTTAGGATTGCTGAAGGAGAATGAGTTATACGTGAACCTGGAGAAGTGCAGCTTTGCCAAGCCACGAACTGGGTACTTAGGCCACTTTATATCGGAGGAAGGCATAGAGGTGGACCCAGAAAAGATCAGGGTTATCAAGGAATGGCCGGTACCCACCAACGTGCGGGAAATGCGTGGATTCTTGGGACTGACAGGCTACTACCGGCGGTTTATTAAAGACTACGGTACTATGGCCGCCTCCCTGACCCTGCTGTTAATGACGGGAGGTTACAAATGGAATAAGGAGGCAGAGGTCGCCTTTGAAAAACTGAAAATGGACATGATGACACTCCCCGCGTTGACCATGCCTGGCTTTCACCTGCCTTTTGAGATTTAG

Protein sequence

MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

Homology

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BLAST of Cmc06g0168301 vs. NCBI nr
Match: XP_016900831.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00860-like [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 5.7e-88
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT
Sbjct: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
           GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL
Sbjct: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120

Query: 121 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
           LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
Sbjct: 121 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 161

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BLAST of Cmc06g0168301 vs. NCBI nr
Match: KAA0042902.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK05304.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 8.7e-81
Identity = 152/161 (94.41%), Postives = 153/161 (95.03%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           MNHVFKPYLRRFV VFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPR 
Sbjct: 122 MNHVFKPYLRRFV-VFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRI 181

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
           GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYR FIKDYGTMAASLTL
Sbjct: 182 GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRWFIKDYGTMAASLTL 241

Query: 121 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
           LL TGGYKWN+EAEVAFEK KMDMMTLP L MP FHLPFEI
Sbjct: 242 LLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI 281

[Close]

BLAST of Cmc06g0168301 vs. NCBI nr
Match: KAA0067256.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK10865.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 268.9 bits (686), Expect = 2.9e-68
Identity = 128/161 (79.50%), Postives = 136/161 (84.47%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           MN VFKPYLRRFVLVFFDDILVYSQG+ EHV HLEVVLGLLKE ELY NLEKCSFAKPR 
Sbjct: 399 MNQVFKPYLRRFVLVFFDDILVYSQGIEEHVQHLEVVLGLLKEKELYANLEKCSFAKPRI 458

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
            YLGHFISE+GIE DPEKIR + EWP PTNVRE+RGFLGLTGYYRRF+KDYG +AA LT 
Sbjct: 459 SYLGHFISEQGIEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKDYGAIAAPLTQ 518

Query: 121 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
           LL  G YKW+ EAE AF KLK  MMTLP L MP F+LPFEI
Sbjct: 519 LLKKGAYKWDAEAEAAFGKLKKAMMTLPVLAMPDFNLPFEI 559

[Close]

BLAST of Cmc06g0168301 vs. NCBI nr
Match: KAA0032862.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 3.2e-67
Identity = 127/161 (78.88%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 2   NHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTG 61
           N VFKPYL+RFVLVFFDDILVYSQG+ EHV HLEVVLGLLKE ELY NLEKCSFAKPR G
Sbjct: 283 NQVFKPYLKRFVLVFFDDILVYSQGMEEHVQHLEVVLGLLKEKELYANLEKCSFAKPRIG 342

Query: 62  YLGHFISEEG-IEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 121
           YLGHFIS++G I+VDPEKIR + EWP  TNV+E+RGFLGLTGYYRRF+KDYGT+AA LT 
Sbjct: 343 YLGHFISKQGIIKVDPEKIRAVSEWPTSTNVQEVRGFLGLTGYYRRFVKDYGTLAAPLTQ 402

Query: 122 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
           LL TG YKWN EAE AF+KLK  MMTLP L MP F+LPFEI
Sbjct: 403 LLKTGSYKWNGEAEAAFDKLKRAMMTLPVLAMPDFNLPFEI 443

[Close]

BLAST of Cmc06g0168301 vs. NCBI nr
Match: KAA0038753.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 4.2e-67
Identity = 124/161 (77.02%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 1    MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
            MN VFKPYLRRFVLVFFDDIL+YSQG+ EHV HLEVVLGLL++ EL+VN+EKCSFAKPR 
Sbjct: 1286 MNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPRI 1345

Query: 61   GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
             YLGHFISE+G+E DPEKIR + EWP PTNVRE+RGFLGLTGYYRRF+K+YGT+AA LT 
Sbjct: 1346 SYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLTQ 1405

Query: 121  LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
            LL  G YKW+ EAE AF KLK  MMTLP LTMP F+LPFEI
Sbjct: 1406 LLKKGTYKWDAEAEGAFNKLKKAMMTLPVLTMPDFNLPFEI 1446

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BLAST of Cmc06g0168301 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.9e-30
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 31  VHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLG--HFISEEGIEVDPEKIRVIKEWPVP 90
           ++HL +VL + ++++ Y N +KC+F +P+  YLG  H IS EG+  DP K+  +  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 91  TNVREMRGFLGLTGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLP 150
            N  E+RGFLGLTGYYRRF+K+YG +   LT LL     KW + A +AF+ LK  + TLP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 151 ALTMPGFHLPF 160
            L +P   LPF
Sbjct: 121 VLALPDLKLPF 131

[Close]

BLAST of Cmc06g0168301 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           MN++ +P L +  LV+ DDI+++S  L EH++ +++V   L +  L + L+KC F K   
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEA 407

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
            +LGH ++ +GI+ +P K++ I  +P+PT  +E+R FLGLTGYYR+FI +Y  +A  +T 
Sbjct: 408 NFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTS 467

Query: 121 LLMTGGYKWNKEAEV--AFEKLKMDMMTLPALTMPGFHLPF 160
            L        ++ E   AFEKLK  ++  P L +P F   F
Sbjct: 468 CLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKF 508

[Close]

BLAST of Cmc06g0168301 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.2e-28
Identity = 64/163 (39.26%), Postives = 98/163 (60.12%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           MN + +P L +  LV+ DDI+V+S  L EH+  L +V   L +  L + L+KC F K  T
Sbjct: 349 MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQET 408

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
            +LGH ++ +GI+ +PEKI  I+++P+PT  +E++ FLGLTGYYR+FI ++  +A  +T 
Sbjct: 409 TFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK 468

Query: 121 LLMTGGY--KWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
            L         N E + AF+KLK  +   P L +P F   F +
Sbjct: 469 CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTL 511

[Close]

BLAST of Cmc06g0168301 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-23
Identity = 58/173 (33.53%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           ++ + + ++ +   V+ DDI+V+S+    H  +L +VL  L +  L VNLEK  F   + 
Sbjct: 265 IDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQV 324

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
            +LG+ ++ +GI+ DP+K+R I E P PT+V+E++ FLG+T YYR+FI+DY  +A  LT 
Sbjct: 325 EFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTN 384

Query: 121 LL--MTGGYKWNKEAEV----------AFEKLKMDMMTLPALTMPGFHLPFEI 162
           L   +    K ++ ++V          +F  LK  + +   L  P F  PF +
Sbjct: 385 LTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHL 437

[Close]

BLAST of Cmc06g0168301 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-20
Identity = 54/174 (31.03%), Postives = 95/174 (54.60%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           ++ V +  + +   V+ DD++++S+   +HV H++ VL  L +  + V+ EK  F K   
Sbjct: 324 LDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESV 383

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
            YLG  +S++G + DPEK++ I+E+P P  V ++R FLGL  YYR FIKD+  +A  +T 
Sbjct: 384 EYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITD 443

Query: 121 LLMTGG------------YKWNKEAEVAFEKLKMDMMTLPA-LTMPGFHLPFEI 162
           +L                 ++N+    AF++L+  + +    L  P F  PF++
Sbjct: 444 ILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDL 497

[Close]

BLAST of Cmc06g0168301 vs. ExPASy TrEMBL
Match: A0A1S4DXX1 (uncharacterized mitochondrial protein AtMg00860-like OS=Cucumis melo OX=3656 GN=LOC107991046 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.7e-88
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT
Sbjct: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
           GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL
Sbjct: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120

Query: 121 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
           LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
Sbjct: 121 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 161

[Close]

BLAST of Cmc06g0168301 vs. ExPASy TrEMBL
Match: A0A5D3C1Z4 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001240 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.2e-81
Identity = 152/161 (94.41%), Postives = 153/161 (95.03%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           MNHVFKPYLRRFV VFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPR 
Sbjct: 122 MNHVFKPYLRRFV-VFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRI 181

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
           GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYR FIKDYGTMAASLTL
Sbjct: 182 GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRWFIKDYGTMAASLTL 241

Query: 121 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
           LL TGGYKWN+EAEVAFEK KMDMMTLP L MP FHLPFEI
Sbjct: 242 LLKTGGYKWNEEAEVAFEKPKMDMMTLPVLAMPDFHLPFEI 281

[Close]

BLAST of Cmc06g0168301 vs. ExPASy TrEMBL
Match: A0A5A7VLC6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00370 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.4e-68
Identity = 128/161 (79.50%), Postives = 136/161 (84.47%), Query Frame = 0


Query: 1   MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
           MN VFKPYLRRFVLVFFDDILVYSQG+ EHV HLEVVLGLLKE ELY NLEKCSFAKPR 
Sbjct: 399 MNQVFKPYLRRFVLVFFDDILVYSQGIEEHVQHLEVVLGLLKEKELYANLEKCSFAKPRI 458

Query: 61  GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
            YLGHFISE+GIE DPEKIR + EWP PTNVRE+RGFLGLTGYYRRF+KDYG +AA LT 
Sbjct: 459 SYLGHFISEQGIEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKDYGAIAAPLTQ 518

Query: 121 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
           LL  G YKW+ EAE AF KLK  MMTLP L MP F+LPFEI
Sbjct: 519 LLKKGAYKWDAEAEAAFGKLKKAMMTLPVLAMPDFNLPFEI 559

[Close]

BLAST of Cmc06g0168301 vs. ExPASy TrEMBL
Match: A0A5A7SP02 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00250 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.6e-67
Identity = 127/161 (78.88%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 2   NHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTG 61
           N VFKPYL+RFVLVFFDDILVYSQG+ EHV HLEVVLGLLKE ELY NLEKCSFAKPR G
Sbjct: 283 NQVFKPYLKRFVLVFFDDILVYSQGMEEHVQHLEVVLGLLKEKELYANLEKCSFAKPRIG 342

Query: 62  YLGHFISEEG-IEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 121
           YLGHFIS++G I+VDPEKIR + EWP  TNV+E+RGFLGLTGYYRRF+KDYGT+AA LT 
Sbjct: 343 YLGHFISKQGIIKVDPEKIRAVSEWPTSTNVQEVRGFLGLTGYYRRFVKDYGTLAAPLTQ 402

Query: 122 LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
           LL TG YKWN EAE AF+KLK  MMTLP L MP F+LPFEI
Sbjct: 403 LLKTGSYKWNGEAEAAFDKLKRAMMTLPVLAMPDFNLPFEI 443

[Close]

BLAST of Cmc06g0168301 vs. ExPASy TrEMBL
Match: A0A5A7SS61 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00430 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.0e-67
Identity = 124/161 (77.02%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 1    MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRT 60
            MN VFKPYLRRFVLVFFDDIL+YSQG+ EHV HLEVVLGLL++ EL+VN+EKCSFAKPR 
Sbjct: 843  MNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPRI 902

Query: 61   GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTL 120
             YLGHFISE+G+E DPEKIR + EWP PTNVRE+RGFLGLTGYYRRF+K+YGT+AA LT 
Sbjct: 903  SYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLTQ 962

Query: 121  LLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI 162
            LL  G YKW+ EAE AF KLK  MMTLP LTMP F+LPFEI
Sbjct: 963  LLKKGTYKWDAEAEGAFNKLKKAMMTLPVLTMPDFNLPFEI 1003

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BLAST of Cmc06g0168301 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 31  VHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLG--HFISEEGIEVDPEKIRVIKEWPVP 90
           ++HL +VL + ++++ Y N +KC+F +P+  YLG  H IS EG+  DP K+  +  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 91  TNVREMRGFLGLTGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLP 150
            N  E+RGFLGLTGYYRRF+K+YG +   LT LL     KW + A +AF+ LK  + TLP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 151 ALTMPGFHLPF 160
            L +P   LPF
Sbjct: 121 VLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc06g0168301 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900831.1	5.7e-88	100.00	PREDICTED: uncharacterized mitochondrial protein AtMg00860-like [Cucumis melo]	[more]
KAA0042902.1	8.7e-81	94.41	peroxidase 64 [Cucumis melo var. makuwa] >TYK05304.1 peroxidase 64 [Cucumis melo...	[more]
KAA0067256.1	2.9e-68	79.50	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK10865.1 Ty3/gyp...	[more]
KAA0032862.1	3.2e-67	78.88	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0038753.1	4.2e-67	77.02	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0168301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92523	1.9e-30	46.56	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P20825	4.0e-28	37.89	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	5.2e-28	39.26	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	3.0e-23	33.53	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.1e-20	31.03	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc06g0168301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXX1	2.7e-88	100.00	uncharacterized mitochondrial protein AtMg00860-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D3C1Z4	4.2e-81	94.41	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001240...	[more]
A0A5A7VLC6	1.4e-68	79.50	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SP02	1.6e-67	78.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81...	[more]
A0A5A7SS61	2.0e-67	77.02	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc06g0168301 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.4e-31	46.56	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 76..156 e-value: 1.3E-24 score: 88.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..73 e-value: 1.3E-22 score: 82.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..65 e-value: 4.7E-10 score: 39.4
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..67 score: 11.396994
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 8..145
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 8..145
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0168301.1	Cmc06g0168301.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0007033	vacuole organization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity