Cmc06g0167001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0167001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr06: 19820547 .. 19821524 (-)
RNA-Seq Expression	Cmc06g0167001
Synteny	Cmc06g0167001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATCATGAAATTTGGCAGATGGATGTCAAGACGACCTTTTTGAATGAAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACAAAAGGATCAAGAACAAAAGATTTGTAAGCTTAAAAAATCCATATATAGATTGAAACAAGCATCTAGATCCTGGAATATAATATTTGATACTGCGAACAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTCTACTATAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGAAATGATATAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACACAATTCCAAATGAAAGATTTGAGAAATGCACAATATATTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACACTAGCCATGCCTCAAACATCTTATATAGACAAAATATTGTCAAGATATAAGATGCAGAATTCCGAAAAGAATCTGTTGCTGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGAATATGAGTAACATTCCCTATGCTTCTGCTGTTGGAAGCCTGATGTATGCAATGTTATGTACTAGACTTGACATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCTTGGACGTGATAGATCTGATCCTTATTGGAGAAGCATAAAAAAATCCCGTATTGCTGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGTAGCAAAGGAAGCAGTATGGCTTCAAAAGTTTTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATATTGTGACAACAGTGGTGCAGTTGCAAATTCAATAGAACCTAGAAGTCATAAACGAGAAAAGCACATTAAATAA

mRNA sequence

ATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATCATGAAATTTGGCAGATGGATGTCAAGACGACCTTTTTGAATGAAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACAAAAGGATCAAGAACAAAAGATTTGTAAGCTTAAAAAATCCATATATAGATTGAAACAAGCATCTAGATCCTGGAATATAATATTTGATACTGCGAACAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTCTACTATAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGAAATGATATAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACACAATTCCAAATGAAAGATTTGAGAAATGCACAATATATTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACACTAGCCATGCCTCAAACATCTTATATAGACAAAATATTGTCAAGATATAAGATGCAGAATTCCGAAAAGAATCTGTTGCTGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGAATATGAGTAACATTCCCTATGCTTCTGCTGTTGGAAGCCTGATGTATGCAATGTTATGTACTAGACTTGACATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCTTGGACGTGATAGATCTGATCCTTATTGGAGAAGCATAAAAAAATCCCGTATTGCTGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGTAGCAAAGGAAGCAGTATGGCTTCAAAAGTTTTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATATTGTGACAACAGTGGTGCAGTTGCAAATTCAATAGAACCTAGAAGTCATAAACGAGAAAAGCACATTAAATAA

Coding sequence (CDS)

ATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATCATGAAATTTGGCAGATGGATGTCAAGACGACCTTTTTGAATGAAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTTTATACAAAAGGATCAAGAACAAAAGATTTGTAAGCTTAAAAAATCCATATATAGATTGAAACAAGCATCTAGATCCTGGAATATAATATTTGATACTGCGAACAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTCTACTATAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGAAATGATATAGGTCATCTAACTGATATTAAGAAATGGCTAGCTACACAATTCCAAATGAAAGATTTGAGAAATGCACAATATATTCTTGGTATCCAAATAGTTCGGAACCGAAAGAACAAAACACTAGCCATGCCTCAAACATCTTATATAGACAAAATATTGTCAAGATATAAGATGCAGAATTCCGAAAAGAATCTGTTGCTGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGAATATGAGTAACATTCCCTATGCTTCTGCTGTTGGAAGCCTGATGTATGCAATGTTATGTACTAGACTTGACATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCTTGGACGTGATAGATCTGATCCTTATTGGAGAAGCATAAAAAAATCCCGTATTGCTGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGTAGCAAAGGAAGCAGTATGGCTTCAAAAGTTTTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATATTGTGACAACAGTGGTGCAGTTGCAAATTCAATAGAACCTAGAAGTCATAAACGAGAAAAGCACATTAAATAA

Protein sequence

MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKSIYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEKNLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQSNLGRDRSDPYWRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDNSGAVANSIEPRSHKREKHIK

Homology

[Close]

BLAST of Cmc06g0167001 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 528.9 bits (1361), Expect = 3.2e-146
Identity = 281/380 (73.95%), Postives = 296/380 (77.89%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
           MIKSIRILLSIATFYD+EIWQMDVKTTFLN NLEESIYMVQPE FIQK QEQKICKL+KS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
           IY LKQASRS NI FDTA KSYG EQNVDEPCVYKRI+NST+AFLVLYVDDILLIGND+G
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
           HL DIKKWLA QFQMKDL NAQY+LG+QIVRNRKNKTLAM QTSYIDK+LSRYKM NS+K
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKK 497

Query: 181 NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
            LL YRYGIHLSKEQCPKTPQEVE+MSNIPYASAVGSLMY MLCTR +ICYSVGIVSR Q
Sbjct: 498 GLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSLMYVMLCTRPNICYSVGIVSRCQ 557

Query: 241 SNLGRD-------------RSDPY------------------------------------ 300
           S  GRD             R+  Y                                    
Sbjct: 558 SKPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYTDFYFQTDKDARKSTSGLVFTM 617

Query: 301 ------WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                 WRSIK+S IADSTMEAEYVA CE AKEAVWL+KFLTDLEVVPNMHLP TLYCDN
Sbjct: 618 NGGAVVWRSIKQSCIADSTMEAEYVATCEAAKEAVWLKKFLTDLEVVPNMHLPFTLYCDN 677

[Close]

BLAST of Cmc06g0167001 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 528.1 bits (1359), Expect = 5.4e-146
Identity = 275/380 (72.37%), Postives = 300/380 (78.95%), Query Frame = 0


Query: 1    MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
            M+KSIRILLSIATFY++EIWQMDVKT FLN NLEESIYMVQPEGFI +DQEQK+CKL+KS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
            IY LKQASRSWNI FDTA KSYGFEQNVDEPCVYK+I+NS +AFL+LYVDDILLIGND+ 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
            +LTD+KKWL TQFQMKDL  AQYILGIQIVRNRKNKTLAM Q SYIDK+LSRYKMQNS+K
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKK 1073

Query: 181  NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
              L +R+GIHLSKEQCPKTPQEVE+M NIPY+SAVGSLMYAMLCTR DICYSVGIVSRYQ
Sbjct: 1074 GQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQ 1133

Query: 241  SNLGRD-------------------------------------RSDP------------- 300
            SN GRD                                     +SD              
Sbjct: 1134 SNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTL 1193

Query: 301  -----YWRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                  WRS+K++ IADSTMEAEYVAACE AKEAVWL+KFLTDLEVVPNMHLPITLYCDN
Sbjct: 1194 NGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDN 1253

[Close]

BLAST of Cmc06g0167001 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 494.2 bits (1271), Expect = 8.6e-136
Identity = 259/380 (68.16%), Postives = 288/380 (75.79%), Query Frame = 0


Query: 1    MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
            M+KSIRILLSIATFYD+EIWQMDVKT FLN NLEESI+M QPEGFI + QEQK+CKL +S
Sbjct: 802  MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61   IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
            IY LKQASRSWNI FDTA KSYGF+QNVDEPCVYK+I    +AFLVLYVDDILLIGND+G
Sbjct: 862  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121  HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
            +LTD+K WLA QFQMKDL  AQY+LGIQI+R+RKNKTLA+ Q +YIDK+L RY MQNS+K
Sbjct: 922  YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 981

Query: 181  NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
             LL +R+G+HLSKEQ PKTPQEVE+M  IPYASAVGSLMYAMLCTR DICY+VGIVSRYQ
Sbjct: 982  GLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQ 1041

Query: 241  SNLGRD-------------RSDPY------------------------------------ 300
            SN G D             R+  Y                                    
Sbjct: 1042 SNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTL 1101

Query: 301  ------WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                  WRSIK+  IADSTMEAEYVAACE AKEAVWL+KFL DLEVVPNM+LPITLYCDN
Sbjct: 1102 NGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDN 1161

[Close]

BLAST of Cmc06g0167001 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 494.2 bits (1271), Expect = 8.6e-136
Identity = 259/380 (68.16%), Postives = 288/380 (75.79%), Query Frame = 0


Query: 1    MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
            M+KSIRILLSIATFYD+EIWQMDVKT FLN NLEESI+M QPEGFI + QEQK+CKL +S
Sbjct: 676  MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 735

Query: 61   IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
            IY LKQASRSWNI FDTA KSYGF+QNVDEPCVYK+I    +AFLVLYVDDILLIGND+G
Sbjct: 736  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 795

Query: 121  HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
            +LTD+K WLA QFQMKDL  AQY+LGIQI+R+RKNKTLA+ Q +YIDK+L RY MQNS+K
Sbjct: 796  YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 855

Query: 181  NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
             LL +R+G+HLSKEQ PKTPQEVE+M  IPYASAVGSLMYAMLCTR DICY+VGIVSRYQ
Sbjct: 856  GLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQ 915

Query: 241  SNLGRD-------------RSDPY------------------------------------ 300
            SN G D             R+  Y                                    
Sbjct: 916  SNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTL 975

Query: 301  ------WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                  WRSIK+  IADSTMEAEYVAACE AKEAVWL+KFL DLEVVPNM+LPITLYCDN
Sbjct: 976  NGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDN 1035

[Close]

BLAST of Cmc06g0167001 vs. NCBI nr
Match: KAA0033121.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 492.7 bits (1267), Expect = 2.5e-135
Identity = 256/380 (67.37%), Postives = 287/380 (75.53%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
           M+KSIRILLSIATFYD+EIW+MDV T FLN NLEESI+M QPEGFI + QEQK+CKL +S
Sbjct: 412 MLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
           IY LKQASRSWNI FDTA KSYGFEQNVDEPCVYK+I    + FLVLYVDDILLIGND+G
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKINKGKVVFLVLYVDDILLIGNDVG 531

Query: 121 HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
           +LTD+K WLA QFQMKDL  AQY+LGIQI+R+RKNKTLA+ Q +YIDK+L RY MQNS+K
Sbjct: 532 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 591

Query: 181 NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
            LL +R+G+HLSKEQCPKTPQEVE+M  IPYASAVGSLMY + CTRL+ICY+V IVSRYQ
Sbjct: 592 GLLPFRHGVHLSKEQCPKTPQEVEDMRRIPYASAVGSLMYVIFCTRLEICYAVRIVSRYQ 651

Query: 241 SNLGRD-------------RSDPY------------------------------------ 300
           SNLG D             R+  Y                                    
Sbjct: 652 SNLGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTNKDSRKSTSRSVFTL 711

Query: 301 ------WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                 WRSIK+  IADSTMEAEYVAACE AKEAVWL+KFL DLEVVPNM+LPITLYCDN
Sbjct: 712 NGGAIVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDN 771

[Close]

BLAST of Cmc06g0167001 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.1e-64
Identity = 147/377 (38.99%), Postives = 209/377 (55.44%), Query Frame = 0


Query: 4    SIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKSIYR 63
            SIR +LS+A   D E+ Q+DVKT FL+ +LEE IYM QPEGF    ++  +CKL KS+Y 
Sbjct: 903  SIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYG 962

Query: 64   LKQASRSWNIIFDTANKSYGFEQNVDEPCVY-KRIINSTIAFLVLYVDDILLIGNDIGHL 123
            LKQA R W + FD+  KS  + +   +PCVY KR   +    L+LYVDD+L++G D G +
Sbjct: 963  LKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLI 1022

Query: 124  TDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEKNL 183
              +K  L+  F MKDL  AQ ILG++IVR R ++ L + Q  YI+++L R+ M+N++   
Sbjct: 1023 AKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVS 1082

Query: 184  LLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQSN 243
                  + LSK+ CP T +E  NM+ +PY+SAVGSLMYAM+CTR DI ++VG+VSR+  N
Sbjct: 1083 TPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLEN 1142

Query: 244  LGRDR-----------------------SDPY---------------------------- 303
             G++                        SDP                             
Sbjct: 1143 PGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSG 1202

Query: 304  ----WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDNSG 325
                W+S  +  +A ST EAEY+AA E  KE +WL++FL +L +    ++   +YCD+  
Sbjct: 1203 GAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQS 1262

[Close]

BLAST of Cmc06g0167001 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 2.6e-42
Identity = 124/389 (31.88%), Postives = 187/389 (48.07%), Query Frame = 0


Query: 2    IKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKSI 61
            I S R +LS+   Y+ ++ QMDVKT FLN  L+E IYM  P+G         +CKL K+I
Sbjct: 981  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAI 1040

Query: 62   YRLKQASRSWNIIFDTANKSYGFEQNVDEPCVY---KRIINSTIAFLVLYVDDILLIGND 121
            Y LKQA+R W  +F+ A K   F  +  + C+Y   K  IN  I +++LYVDD+++   D
Sbjct: 1041 YGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATGD 1100

Query: 122  IGHLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQN- 181
            +  + + K++L  +F+M DL   ++ +GI+I    +   + + Q++Y+ KILS++ M+N 
Sbjct: 1101 MTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENC 1160

Query: 182  ---SEKNLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVG 241
               S        Y +  S E C           N P  S +G LMY MLCTR D+  +V 
Sbjct: 1161 NAVSTPLPSKINYELLNSDEDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVN 1220

Query: 242  IVSRYQS--------NLGR--------------------------------------DRS 301
            I+SRY S        NL R                                      DR 
Sbjct: 1221 ILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRK 1280

Query: 302  DP-------------YWRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNM 325
                            W + +++ +A S+ EAEY+A  E  +EA+WL+  LT + +   +
Sbjct: 1281 STTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI--KL 1340

[Close]

BLAST of Cmc06g0167001 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.8e-31
Identity = 106/377 (28.12%), Postives = 160/377 (42.44%), Query Frame = 0


Query: 4    SIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKSIYR 63
            SIRI+L +A      I Q+DV   FL   L + +YM QP GF+ KD+   +C+L+K+IY 
Sbjct: 1029 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYG 1088

Query: 64   LKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIGHLT 123
            LKQA R+W +   T   + GF  ++ +  ++      +I ++++YVDDIL+ GND   L 
Sbjct: 1089 LKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLK 1148

Query: 124  DIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEKNLL 183
                 L+ +F +K+  +  Y LGI+    R  + L + Q  Y   +L+R  M  ++    
Sbjct: 1149 HTLDALSQRFSVKEHEDLHYFLGIE--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVAT 1208

Query: 184  LYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQSNL 243
                   L+     K P   E      Y   VGSL Y +  TR D+ Y+V  +S+Y    
Sbjct: 1209 PMATSPKLTLHSGTKLPDPTE------YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMP 1268

Query: 244  GRDR----------------------------------------SDPY------------ 303
              D                                         +D Y            
Sbjct: 1269 TDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGH 1328

Query: 304  ----WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDNSG 325
                W S K+  +  S+ EAEY +    + E  W+   LT+L +   +  P  +YCDN G
Sbjct: 1329 HPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGI--QLSHPPVIYCDNVG 1388

[Close]

BLAST of Cmc06g0167001 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.1e-30
Identity = 108/377 (28.65%), Postives = 159/377 (42.18%), Query Frame = 0


Query: 4    SIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKSIYR 63
            SIRI+L +A      I Q+DV   FL   L + +YM QP GFI KD+   +CKL+K++Y 
Sbjct: 1046 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

Query: 64   LKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIGHLT 123
            LKQA R+W +       + GF  +V +  ++      +I ++++YVDDIL+ GND   L 
Sbjct: 1106 LKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLH 1165

Query: 124  DIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEKNLL 183
            +    L+ +F +KD     Y LGI+    R    L + Q  YI  +L+R  M  ++    
Sbjct: 1166 NTLDNLSQRFSVKDHEELHYFLGIE--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTT 1225

Query: 184  LYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRY---- 243
                   LS     K     E      Y   VGSL Y +  TR DI Y+V  +S++    
Sbjct: 1226 PMAPSPKLSLYSGTKLTDPTE------YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMP 1285

Query: 244  -------------------------------------QSNLGRDRSDPY----------- 303
                                                  ++   D+ D             
Sbjct: 1286 TEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGH 1345

Query: 304  ----WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDNSG 325
                W S K+  +  S+ EAEY +    + E  W+   LT+L +   +  P  +YCDN G
Sbjct: 1346 HPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGI--RLTRPPVIYCDNVG 1405

[Close]

BLAST of Cmc06g0167001 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 4.9e-17
Identity = 64/218 (29.36%), Postives = 103/218 (47.25%), Query Frame = 0


Query: 22  MDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKSIYRLKQASRSWNIIFDTANKS 81
           MDV T FLN  ++E IY+ QP GF+ +     + +L   +Y LKQA   WN   +   K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 82  YGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLRNA 141
            GF ++  E  +Y R  +    ++ +YVDD+L+          +K+ L   + MKDL   
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 142 QYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEKNLLLYRYGIHLSKEQCPKTPQ 201
              LG+ I     N  + +    YI K  S  ++   +    L +  +  SK     T  
Sbjct: 121 DKFLGLNI-HQSSNGDITLSLQDYIAKAASESEINTFK----LTQTPLCNSKPLFETTSP 180

Query: 202 EVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRY 240
            +++++  PY S VG L++     R DI Y V ++SR+
Sbjct: 181 HLKDIT--PYQSIVGQLLFCANTGRPDISYPVSLLSRF 211

[Close]

BLAST of Cmc06g0167001 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 1.5e-146
Identity = 281/380 (73.95%), Postives = 296/380 (77.89%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
           MIKSIRILLSIATFYD+EIWQMDVKTTFLN NLEESIYMVQPE FIQK QEQKICKL+KS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
           IY LKQASRS NI FDTA KSYG EQNVDEPCVYKRI+NST+AFLVLYVDDILLIGND+G
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
           HL DIKKWLA QFQMKDL NAQY+LG+QIVRNRKNKTLAM QTSYIDK+LSRYKM NS+K
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKK 497

Query: 181 NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
            LL YRYGIHLSKEQCPKTPQEVE+MSNIPYASAVGSLMY MLCTR +ICYSVGIVSR Q
Sbjct: 498 GLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSLMYVMLCTRPNICYSVGIVSRCQ 557

Query: 241 SNLGRD-------------RSDPY------------------------------------ 300
           S  GRD             R+  Y                                    
Sbjct: 558 SKPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYTDFYFQTDKDARKSTSGLVFTM 617

Query: 301 ------WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                 WRSIK+S IADSTMEAEYVA CE AKEAVWL+KFLTDLEVVPNMHLP TLYCDN
Sbjct: 618 NGGAVVWRSIKQSCIADSTMEAEYVATCEAAKEAVWLKKFLTDLEVVPNMHLPFTLYCDN 677

[Close]

BLAST of Cmc06g0167001 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.6e-146
Identity = 275/380 (72.37%), Postives = 300/380 (78.95%), Query Frame = 0


Query: 1    MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
            M+KSIRILLSIATFY++EIWQMDVKT FLN NLEESIYMVQPEGFI +DQEQK+CKL+KS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
            IY LKQASRSWNI FDTA KSYGFEQNVDEPCVYK+I+NS +AFL+LYVDDILLIGND+ 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
            +LTD+KKWL TQFQMKDL  AQYILGIQIVRNRKNKTLAM Q SYIDK+LSRYKMQNS+K
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKK 1073

Query: 181  NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
              L +R+GIHLSKEQCPKTPQEVE+M NIPY+SAVGSLMYAMLCTR DICYSVGIVSRYQ
Sbjct: 1074 GQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQ 1133

Query: 241  SNLGRD-------------------------------------RSDP------------- 300
            SN GRD                                     +SD              
Sbjct: 1134 SNPGRDHWTAVKNILKYLRRTRNYMLVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTL 1193

Query: 301  -----YWRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                  WRS+K++ IADSTMEAEYVAACE AKEAVWL+KFLTDLEVVPNMHLPITLYCDN
Sbjct: 1194 NGGAVVWRSVKQTCIADSTMEAEYVAACEAAKEAVWLRKFLTDLEVVPNMHLPITLYCDN 1253

[Close]

BLAST of Cmc06g0167001 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 4.2e-136
Identity = 259/380 (68.16%), Postives = 288/380 (75.79%), Query Frame = 0


Query: 1    MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
            M+KSIRILLSIATFYD+EIWQMDVKT FLN NLEESI+M QPEGFI + QEQK+CKL +S
Sbjct: 802  MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61   IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
            IY LKQASRSWNI FDTA KSYGF+QNVDEPCVYK+I    +AFLVLYVDDILLIGND+G
Sbjct: 862  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121  HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
            +LTD+K WLA QFQMKDL  AQY+LGIQI+R+RKNKTLA+ Q +YIDK+L RY MQNS+K
Sbjct: 922  YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 981

Query: 181  NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
             LL +R+G+HLSKEQ PKTPQEVE+M  IPYASAVGSLMYAMLCTR DICY+VGIVSRYQ
Sbjct: 982  GLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQ 1041

Query: 241  SNLGRD-------------RSDPY------------------------------------ 300
            SN G D             R+  Y                                    
Sbjct: 1042 SNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTL 1101

Query: 301  ------WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                  WRSIK+  IADSTMEAEYVAACE AKEAVWL+KFL DLEVVPNM+LPITLYCDN
Sbjct: 1102 NGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDN 1161

[Close]

BLAST of Cmc06g0167001 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 4.2e-136
Identity = 259/380 (68.16%), Postives = 288/380 (75.79%), Query Frame = 0


Query: 1    MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
            M+KSIRILLSIATFYD+EIWQMDVKT FLN NLEESI+M QPEGFI + QEQK+CKL +S
Sbjct: 676  MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 735

Query: 61   IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
            IY LKQASRSWNI FDTA KSYGF+QNVDEPCVYK+I    +AFLVLYVDDILLIGND+G
Sbjct: 736  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 795

Query: 121  HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
            +LTD+K WLA QFQMKDL  AQY+LGIQI+R+RKNKTLA+ Q +YIDK+L RY MQNS+K
Sbjct: 796  YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 855

Query: 181  NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
             LL +R+G+HLSKEQ PKTPQEVE+M  IPYASAVGSLMYAMLCTR DICY+VGIVSRYQ
Sbjct: 856  GLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQ 915

Query: 241  SNLGRD-------------RSDPY------------------------------------ 300
            SN G D             R+  Y                                    
Sbjct: 916  SNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTL 975

Query: 301  ------WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                  WRSIK+  IADSTMEAEYVAACE AKEAVWL+KFL DLEVVPNM+LPITLYCDN
Sbjct: 976  NGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDN 1035

[Close]

BLAST of Cmc06g0167001 vs. ExPASy TrEMBL
Match: A0A5D3CZY3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00460 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 1.2e-135
Identity = 256/380 (67.37%), Postives = 287/380 (75.53%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQEQKICKLKKS 60
           M+KSIRILLSIATFYD+EIW+MDV T FLN NLEESI+M QPEGFI + QEQK+CKL +S
Sbjct: 412 MLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGNDIG 120
           IY LKQASRSWNI FDTA KSYGFEQNVDEPCVYK+I    + FLVLYVDDILLIGND+G
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKINKGKVVFLVLYVDDILLIGNDVG 531

Query: 121 HLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQNSEK 180
           +LTD+K WLA QFQMKDL  AQY+LGIQI+R+RKNKTLA+ Q +YIDK+L RY MQNS+K
Sbjct: 532 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 591

Query: 181 NLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVSRYQ 240
            LL +R+G+HLSKEQCPKTPQEVE+M  IPYASAVGSLMY + CTRL+ICY+V IVSRYQ
Sbjct: 592 GLLPFRHGVHLSKEQCPKTPQEVEDMRRIPYASAVGSLMYVIFCTRLEICYAVRIVSRYQ 651

Query: 241 SNLGRD-------------RSDPY------------------------------------ 300
           SNLG D             R+  Y                                    
Sbjct: 652 SNLGLDHWTAVKIILKYLRRTRDYMLVYGAKDLILTGYTDSDFQTNKDSRKSTSRSVFTL 711

Query: 301 ------WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITLYCDN 326
                 WRSIK+  IADSTMEAEYVAACE AKEAVWL+KFL DLEVVPNM+LPITLYCDN
Sbjct: 712 NGGAIVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDN 771

[Close]

BLAST of Cmc06g0167001 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 124.0 bits (310), Expect = 2.2e-28
Identity = 95/384 (24.74%), Postives = 173/384 (45.05%), Query Frame = 0


Query: 2   IKSIRILLSIATFYDHEIWQMDVKTTFLNENLEESIYMVQPEGFIQKDQE----QKICKL 61
           + S++++L+I+  Y+  + Q+D+   FLN +L+E IYM  P G+  +  +      +C L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  KKSIYRLKQASRSWNIIFDTANKSYGFEQNVDEPCVYKRIINSTIAFLVLYVDDILLIGN 121
           KKSIY LKQASR W + F      +GF Q+  +   + +I  +    +++YVDDI++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 DIGHLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQTSYIDKILSRYKMQN 181
           +   + ++K  L + F+++DL   +Y LG++I R+     +   Q  Y   +L    +  
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINIC--QRKYALDLLDETGLLG 352

Query: 182 SEKNLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAMLCTRLDICYSVGIVS 241
            + + +     +  S           + +    Y   +G LMY  + TRLDI ++V  +S
Sbjct: 353 CKPSSVPMDPSVTFSAH------SGGDFVDAKAYRRLIGRLMYLQI-TRLDISFAVNKLS 412

Query: 242 RY-------------------QSNLG---------------------------RDRSDPY 301
           ++                   +  +G                           R  ++ Y
Sbjct: 413 QFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGY 472

Query: 302 ----------WRSIKKSRIADSTMEAEYVAACEVAKEAVWLQKFLTDLEVVPNMHLPITL 326
                     W+S K+  ++ S+ EAEY A      E +WL +F  +L++   +  P  L
Sbjct: 473 CMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL--PLSKPTLL 532

[Close]

BLAST of Cmc06g0167001 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-07
Identity = 47/133 (35.34%), Postives = 66/133 (49.62%), Query Frame = 0


Query: 104 FLVLYVDDILLIGNDIGHLTDIKKWLATQFQMKDLRNAQYILGIQIVRNRKNKTLAMPQT 163
           +L+LYVDDILL G+    L  +   L++ F MKDL    Y LGIQI  +     L + QT
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 164 SYIDKILSRYKMQNSEKNLLLYRYGIHLSKEQCPKTPQEVENMSNIPYASAVGSLMYAML 223
            Y ++IL+   M + +         ++ S     K P   +      + S VG+L Y  L
Sbjct: 62  KYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSD------FRSIVGALQYLTL 121

Query: 224 CTRLDICYSVGIV 237
            TR DI Y+V IV
Sbjct: 122 -TRPDISYAVNIV 124

The following BLAST results are available for this feature:

BLAST of Cmc06g0167001 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03644.1	3.2e-146	73.95	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	5.4e-146	72.37	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	8.6e-136	68.16	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	8.6e-136	68.16	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0033121.1	2.5e-135	67.37	gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis ...	[more]

BLAST of Cmc06g0167001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-64	38.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.6e-42	31.88	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	7.8e-31	28.12	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.1e-30	28.65	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P25600	4.9e-17	29.36	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc06g0167001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BX45	1.5e-146	73.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
E2GK51	2.6e-146	72.37	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	4.2e-136	68.16	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	4.2e-136	68.16	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5D3CZY3	1.2e-135	67.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G004...	[more]

BLAST of Cmc06g0167001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.2e-28	24.74	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.8e-07	35.34	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 3..179 e-value: 2.8E-43 score: 148.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..246
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 252..324 e-value: 1.68967E-25 score: 97.5389

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0167001.1	Cmc06g0167001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding