Cmc06g0166991 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0166991
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr06: 19780922 .. 19781227 (+)
RNA-Seq Expression	Cmc06g0166991
Synteny	Cmc06g0166991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTATGCAATGTTATGTATTAGACCTGACATTTGCTATTCAGTAGGGATAGTTACTAGATATCAGTCCAATCTTGGACGTGATCATTGGACAGCCGTTAAAAATATTCTAAAATATCTTAAAAGAATAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAATCTGATAAAGATGCTAGAATGTCTATATCGGGATCAGTTTTCACTTTGAATGGAGGAGTAGTAGTATGA

mRNA sequence

ATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTATGCAATGTTATGTATTAGACCTGACATTTGCTATTCAGTAGGGATAGTTACTAGATATCAGTCCAATCTTGGACGTGATCATTGGACAGCCGTTAAAAATATTCTAAAATATCTTAAAAGAATAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAATCTGATAAAGATGCTAGAATGTCTATATCGGGATCAGTTTTCACTTTGAATGGAGGAGTAGTAGTATGA

Coding sequence (CDS)

ATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTATGCAATGTTATGTATTAGACCTGACATTTGCTATTCAGTAGGGATAGTTACTAGATATCAGTCCAATCTTGGACGTGATCATTGGACAGCCGTTAAAAATATTCTAAAATATCTTAAAAGAATAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCTGATTTTCAATCTGATAAAGATGCTAGAATGTCTATATCGGGATCAGTTTTCACTTTGAATGGAGGAGTAGTAGTATGA

Protein sequence

MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYMLVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV

Homology

[Close]

BLAST of Cmc06g0166991 vs. NCBI nr
Match: KAA0048610.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27194.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.0e-47
Identity = 98/101 (97.03%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
           MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM
Sbjct: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60

Query: 61  LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
           LVYGSKDLIL GYTDSDFQS KDARMSISG VFTLNGGVVV
Sbjct: 61  LVYGSKDLILIGYTDSDFQSGKDARMSISGPVFTLNGGVVV 101

[Close]

BLAST of Cmc06g0166991 vs. NCBI nr
Match: KAA0032045.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK16865.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 7.7e-43
Identity = 89/101 (88.12%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
           MSNIPYASA+GSLMYAMLC RPDICYSVGIV+ Y SN GRDHWT+VKNILKYL+R KDYM
Sbjct: 38  MSNIPYASAIGSLMYAMLCTRPDICYSVGIVSTYLSNPGRDHWTSVKNILKYLRRTKDYM 97

Query: 61  LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
           LVYGSKDLILTGYTDSDFQ+DKDAR S SGSVFTLNGGVVV
Sbjct: 98  LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGVVV 138

[Close]

BLAST of Cmc06g0166991 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-42
Identity = 88/101 (87.13%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1    MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
            M NIPY+SAVGSLMYAMLC RPDICYSVGIV+RYQSN GRDHWTAVKNILKYL+R ++YM
Sbjct: 1099 MRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYM 1158

Query: 61   LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
            LVYG+KDLILTGYTDSDFQSDKDAR S SGSVFTLNGG VV
Sbjct: 1159 LVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVV 1199

[Close]

BLAST of Cmc06g0166991 vs. NCBI nr
Match: KAA0063746.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14949.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-42
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
           MSNI Y S VGSLMYA+LC RPDICYSVGIV+RYQSN GRDHWTAVKNILKYL+RIKDYM
Sbjct: 117 MSNILYVSVVGSLMYALLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRIKDYM 176

Query: 61  LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
           LVYGSKDLILTGYTDSDFQ+DKDAR S SGSVFTLNGG VV
Sbjct: 177 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVV 217

[Close]

BLAST of Cmc06g0166991 vs. NCBI nr
Match: TYK04573.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.3e-42
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
           MSNIPYASAVGSLMYAMLC RP+ICYSVGIV+RYQSN GRDHWTAVKNILKYL+R KDYM
Sbjct: 818 MSNIPYASAVGSLMYAMLCTRPNICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 877

Query: 61  LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
           LVYGSKDLILT YTDSDFQ+DKD R S SGSVFTLNGG VV
Sbjct: 878 LVYGSKDLILTRYTDSDFQTDKDVRKSTSGSVFTLNGGAVV 918

[Close]

BLAST of Cmc06g0166991 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-24
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1    MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
            M+ +PY+SAVGSLMYAM+C RPDI ++VG+V+R+  N G++HW AVK IL+YL+      
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVV 101
            L +G  D IL GYTD+D   D D R S +G +FT +GG +
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAI 1205

[Close]

BLAST of Cmc06g0166991 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.6e-17
Identity = 42/101 (41.58%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
           M N+PY SAVG++MY M+  RPD+  +VG+++++ S+    HW A+K +L+YL+  + Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGSKDLI-LTGYTDSDFQSDKDARMSISGSVFTLNGGVV 101
           L +       L GY+D+D+  D ++R S SG +F LNGG V
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCV 101

[Close]

BLAST of Cmc06g0166991 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-11
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 3    NIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYMLV 62
            N P  S +G LMY MLC RPD+  +V I++RY S    + W  +K +L+YLK   D  L+
Sbjct: 1178 NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLI 1237

Query: 63   YGSKDLI----LTGYTDSDFQSDKDARMSISGSVFTL 96
            +  K+L     + GY DSD+   +  R S +G +F +
Sbjct: 1238 F-KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKM 1273

[Close]

BLAST of Cmc06g0166991 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.2e-07
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDY-MLVYG 65
            Y   VGSL Y +   RPD+ Y+V  +++Y      DHW A+K +L+YL    D+ + +  
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SKDLILTGYTDSDFQSDKDARMSISGSVFTL 96
               L L  Y+D+D+  D D  +S +G +  L
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYL 1317

[Close]

BLAST of Cmc06g0166991 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 30/91 (32.97%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDY-MLVYG 65
            Y   VGSL Y +   RPDI Y+V  ++++      +H  A+K IL+YL    ++ + +  
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SKDLILTGYTDSDFQSDKDARMSISGSVFTL 96
               L L  Y+D+D+  DKD  +S +G +  L
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYL 1334

[Close]

BLAST of Cmc06g0166991 vs. ExPASy TrEMBL
Match: A0A5D3DUL2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00540 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 98/101 (97.03%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
           MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM
Sbjct: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60

Query: 61  LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
           LVYGSKDLIL GYTDSDFQS KDARMSISG VFTLNGGVVV
Sbjct: 61  LVYGSKDLILIGYTDSDFQSGKDARMSISGPVFTLNGGVVV 101

[Close]

BLAST of Cmc06g0166991 vs. ExPASy TrEMBL
Match: A0A5D3CZA8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001430 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 89/101 (88.12%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
           MSNIPYASA+GSLMYAMLC RPDICYSVGIV+ Y SN GRDHWT+VKNILKYL+R KDYM
Sbjct: 38  MSNIPYASAIGSLMYAMLCTRPDICYSVGIVSTYLSNPGRDHWTSVKNILKYLRRTKDYM 97

Query: 61  LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
           LVYGSKDLILTGYTDSDFQ+DKDAR S SGSVFTLNGGVVV
Sbjct: 98  LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGVVV 138

[Close]

BLAST of Cmc06g0166991 vs. ExPASy TrEMBL
Match: A0A5A7VBE3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold437G00140 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.4e-43
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
           MSNI Y S VGSLMYA+LC RPDICYSVGIV+RYQSN GRDHWTAVKNILKYL+RIKDYM
Sbjct: 117 MSNILYVSVVGSLMYALLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRIKDYM 176

Query: 61  LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
           LVYGSKDLILTGYTDSDFQ+DKDAR S SGSVFTLNGG VV
Sbjct: 177 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVV 217

[Close]

BLAST of Cmc06g0166991 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.4e-43
Identity = 88/101 (87.13%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1    MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
            M NIPY+SAVGSLMYAMLC RPDICYSVGIV+RYQSN GRDHWTAVKNILKYL+R ++YM
Sbjct: 1099 MRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYM 1158

Query: 61   LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
            LVYG+KDLILTGYTDSDFQSDKDAR S SGSVFTLNGG VV
Sbjct: 1159 LVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVV 1199

[Close]

BLAST of Cmc06g0166991 vs. ExPASy TrEMBL
Match: A0A5A7UE50 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004690 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MSNIPYASAVGSLMYAMLCIRPDICYSVGIVTRYQSNLGRDHWTAVKNILKYLKRIKDYM 60
           MSNIPYASAVGSLMYAMLC RP+ICYSVGIV+RYQSN GRDHWTAVKNILKYL+R KDYM
Sbjct: 651 MSNIPYASAVGSLMYAMLCTRPNICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 710

Query: 61  LVYGSKDLILTGYTDSDFQSDKDARMSISGSVFTLNGGVVV 102
           LVYGSKDLILT YTDSDFQ+DKD R S SGSVFTLNGG VV
Sbjct: 711 LVYGSKDLILTRYTDSDFQTDKDVRKSTSGSVFTLNGGAVV 751

The following BLAST results are available for this feature:

BLAST of Cmc06g0166991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048610.1	4.0e-47	97.03	gag/pol protein [Cucumis melo var. makuwa] >TYK27194.1 gag/pol protein [Cucumis ...	[more]
KAA0032045.1	7.7e-43	88.12	gag/pol protein [Cucumis melo var. makuwa] >TYK16865.1 gag/pol protein [Cucumis ...	[more]
ADJ18449.1	1.7e-42	87.13	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0063746.1	1.7e-42	88.12	gag/pol protein [Cucumis melo var. makuwa] >TYK14949.1 gag/pol protein [Cucumis ...	[more]
TYK04573.1	2.3e-42	88.12	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]

BLAST of Cmc06g0166991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-24	52.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	7.6e-17	41.58	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	4.8e-11	38.14	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.2e-07	34.07	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.0e-05	32.97	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc06g0166991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUL2	1.9e-47	97.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G0054...	[more]
A0A5D3CZA8	3.7e-43	88.12	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00143...	[more]
A0A5A7VBE3	8.4e-43	88.12	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold437G0014...	[more]
E2GK51	8.4e-43	87.13	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7UE50	1.1e-42	88.12	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]

BLAST of Cmc06g0166991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0166991.1	Cmc06g0166991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0008270	zinc ion binding