Cmc06g0166691 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0166691
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr06: 19300354 .. 19300996 (-)
RNA-Seq Expression	Cmc06g0166691
Synteny	Cmc06g0166691

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATGGGTCATACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCAGTCGGGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGAGGAGCTGTTGAAAAAACCACAACCAGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAGGTACACATTTGTCTCGAACTACGTACTTCTAACACAACGACGTTAGTTCTTCTCAATAATTTTTAGTTATGCGGTGCAGAATTTCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAAGGTAAGTAA

mRNA sequence

ATGATTCATGGGTCATACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCAGTCGGGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGAGGAGCTGTTGAAAAAACCACAACCAGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAGAATTTCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAAGGTAAGTAA

Coding sequence (CDS)

ATGATTCATGGGTCATACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCAGTCGGGTGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGAGGAGCTGTTGAAAAAACCACAACCAGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAGAATTTCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAAGGTAAGTAA

Protein sequence

MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGK

Homology

[Close]

BLAST of Cmc06g0166691 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 4.4e-100
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 9.8e-100
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 371.3 bits (952), Expect = 4.8e-99
Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRW+WFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG AADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 371.3 bits (952), Expect = 4.8e-99
Identity = 181/186 (97.31%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVC QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHIL HDVKNRV
Sbjct: 53  MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. NCBI nr
Match: KAA0065893.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 1.8e-98
Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLYILAHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRIL DALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILCDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.1e-100
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 4.7e-100
Identity = 182/186 (97.85%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.3e-99
Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRW+WFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG AADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.3e-99
Identity = 181/186 (97.31%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVC QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHIL HDVKNRV
Sbjct: 53  MIHGSDLVCHQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. ExPASy TrEMBL
Match: A0A5A7VCK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00700 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 8.9e-99
Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           MIHGS LVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRV
Sbjct: 53  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLYILAHDVKNRV 112

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTY 120
           IQREFM+SGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFEN LGALDGTY
Sbjct: 113 IQREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTY 172

Query: 121 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNR 180
           IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRIL DALSRPNR
Sbjct: 173 IKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILCDALSRPNR 232

Query: 181 LKVPKG 187
           LKVPKG
Sbjct: 233 LKVPKG 238

[Close]

BLAST of Cmc06g0166691 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 131.7 bits (330), Expect = 6.0e-31
Identity = 74/188 (39.36%), Postives = 111/188 (59.04%), Query Frame = 0


Query: 1   MIHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRV 60
           +++G    C ++ RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ R 
Sbjct: 34  ILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRA 93

Query: 61  IQREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECT-DQRWRWFENFLGALDGT 120
           +Q  F  SGETISRHFN VL AVI + ++     QP  N  T +    +F++ +G +D  
Sbjct: 94  VQELFCYSGETISRHFNNVLNAVIAISKDFF---QPNSNSDTLENDDPYFKDCVGVVDSF 153

Query: 121 YIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPN 180
           +I V V   ++  +R   G +  NVL        F YVLAGWEGSA+D ++L  AL+R N
Sbjct: 154 HIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRN 213

Query: 181 RLKVPKGK 188
           +L+VP+GK
Sbjct: 214 KLQVPQGK 218

[Close]

BLAST of Cmc06g0166691 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-22
Identity = 61/183 (33.33%), Postives = 91/183 (49.73%), Query Frame = 0


Query: 9   CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMQS 68
           C Q  RM   CF  LC++L+T   L  T  + +EE VAMFL I  H+   R +   F ++
Sbjct: 66  CLQLLRMSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRN 125

Query: 69  GETISRHFNMVLLAVIRLHEELLKKP-----QPVPNEC-TDQR-WRWFENFLGALDGTYI 128
            ET+ R F  VL A   L  + ++ P       +P     DQR W +F  F+GA+DGT++
Sbjct: 126 QETVQRKFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHV 185

Query: 129 KVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRL 185
            V V    +  Y  R    + N++ +CD K  F Y+  G  GS  D+ +L+ A    +  
Sbjct: 186 CVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEF 245

[Close]

BLAST of Cmc06g0166691 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-15
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 108 WFENFLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAAD 167
           +F++ +GA+D T+I   V       +R RKG+++ N+L  C+   +F+YVL+GWEGSA D
Sbjct: 21  YFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHD 80

Query: 168 SRILRDALSR-PNRLKVPK 186
           S++L DAL+R  NRL VP+
Sbjct: 81  SKVLNDALTRNSNRLPVPE 99

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BLAST of Cmc06g0166691 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 58/187 (31.02%), Postives = 81/187 (43.32%), Query Frame = 0


Query: 2   IHGSYLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVI 61
           I+ + + C+   RM    F  LC +L    GL S+  + ++E VA+FL I A +   R I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 62  QREFMQSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENFLGALDGTYI 121
              F  + ETI R F+ VL A+ RL  E + +P+ V      +  R   N L        
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYI-RPRKV------EELRAISNRL-------- 136

Query: 122 KVNVPASDRARY----RTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR 181
                  D  RY        G  + NVL +CD    F Y   G  GS  D+R+L  A+S 
Sbjct: 137 ------QDDTRYWPFLMDLLGIASFNVLAICDLDMLFTYCFVGMAGSTHDARVLSAAISD 182

Query: 182 PNRLKVP 185
                VP
Sbjct: 197 DPLFHVP 182

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BLAST of Cmc06g0166691 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 6.3e-04
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 0


Query: 154 FVYVLAGWEGSAADSRILRDALSR 178
           F+YVL+GWEGSA DSR+L DAL +
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK 48

The following BLAST results are available for this feature:

BLAST of Cmc06g0166691 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035620.1	4.4e-100	98.39	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0046727.1	9.8e-100	97.85	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0048361.1	4.8e-99	97.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051057.1	4.8e-99	97.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065893.1	1.8e-98	97.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0166691 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc06g0166691 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDX0	2.1e-100	98.39	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXW1	4.7e-100	97.85	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U476	2.3e-99	97.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9H2	2.3e-99	97.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VCK9	8.9e-99	97.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cmc06g0166691 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	6.0e-31	39.36	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	1.8e-22	33.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	3.5e-15	45.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28730.1	1.8e-11	31.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	6.3e-04	70.83	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 116..173 e-value: 7.3E-8 score: 32.2
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..186
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0166691.1	Cmc06g0166691.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding