Cmc06g0166101 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0166101
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 18278774 .. 18279322 (-)
RNA-Seq Expression	Cmc06g0166101
Synteny	Cmc06g0166101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATCTTGGTTTACTCTAAGACAGAGGTTGAGCATGAGGAGCACTTACATCAGGTTTTGGAGACTCTTCAAGCCAATAAGCTATACGCTAAGTTTTTTTAAGTGTGAGTTCTTGTTGAAGAAGGTGTCTTTTCTTGGCCATGTGTTATCCAGTGAGGGAGTTTCGGTAGACCCGATGAAGATTGAAGCTGTTACTAGTTGGCCTCGACTATCTACAGTCAGCGAAGTTCTTAGTTTCTTGGGTTTAGTAGGTTATTATCGAAGGTTCGTGGAAGATTTCTCTCGTATAGCCAGTCCGTTGACTCAGTTGACCAGAAAGGGGACTCATTTTGTTTGGAGCCTAGCATGTAAGAGTAGTTTCCAGGAGCTTAAAAAGAAGCTTGTGACTACGCCACTCCTTACAGTGCCAGATGGGTCTGGAAGTTTTGTGGTCTACAGTGACGCCTCTAAGAAAGGACTGGGTTGTATTTTGATACAACAAGGTAAGGTAGTTGCTTATACCTCTCGTCAATTGAAGAGTCATGAGCAGAACTACCCCCTCCCATGA

mRNA sequence

ATGATATCTTGGTTTACTCTAAGACAGAGGTTGAGCATGAGGAGCACTTACATCAGGTTTTGGAGACTCTTCAAGCCAATAAGCTATACGCTAAGTTTTTTTAAGTGTGAGTTCTTGTTGAAGAAGGTGTCTTTTCTTGGCCATGTGTTATCCAGTGAGGGAGTTTCGGTAGACCCGATGAAGATTGAAGCTGTTACTAGTTGGCCTCGACTATCTACAGTCAGCGAAGTTCTTAGTTTCTTGGGTTTAGTAGGTTATTATCGAAGGTTCGTGGAAGATTTCTCTCGTATAGCCAGTCCGTTGACTCAGTTGACCAGAAAGGGGACTCATTTTGTTTGGAGCCTAGCATGTAAGAGTAGTTTCCAGGAGCTTAAAAAGAAGCTTGTGACTACGCCACTCCTTACAGTGCCAGATGGGTCTGGAAGTTTTGTGGTCTACAGTGACGCCTCTAAGAAAGGACTGGGTTGTATTTTGATACAACAAGGTAAGGTAGTTGCTTATACCTCTCGTCAATTGAAGAGTCATGAGCAGAACTACCCCCTCCCATGA

Coding sequence (CDS)

ATGATATCTTGGTTTACTCTAAGACAGAGGTTGAGCATGAGGAGCACTTACATCAGGTTTTGGAGACTCTTCAAGCCAATAAGCTATACGCTAAGTTTTTTTAAGTGTGAGTTCTTGTTGAAGAAGGTGTCTTTTCTTGGCCATGTGTTATCCAGTGAGGGAGTTTCGGTAGACCCGATGAAGATTGAAGCTGTTACTAGTTGGCCTCGACTATCTACAGTCAGCGAAGTTCTTAGTTTCTTGGGTTTAGTAGGTTATTATCGAAGGTTCGTGGAAGATTTCTCTCGTATAGCCAGTCCGTTGACTCAGTTGACCAGAAAGGGGACTCATTTTGTTTGGAGCCTAGCATGTAAGAGTAGTTTCCAGGAGCTTAAAAAGAAGCTTGTGACTACGCCACTCCTTACAGTGCCAGATGGGTCTGGAAGTTTTGTGGTCTACAGTGACGCCTCTAAGAAAGGACTGGGTTGTATTTTGATACAACAAGGTAAGGTAGTTGCTTATACCTCTCGTCAATTGAAGAGTCATGAGCAGAACTACCCCCTCCCATGA

Protein sequence

MISWFTLRQRLSMRSTYIRFWRLFKPISYTLSFFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVEDFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKKGLGCILIQQGKVVAYTSRQLKSHEQNYPLP

Homology

[Close]

BLAST of Cmc06g0166101 vs. NCBI nr
Match: KAA0063403.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK11661.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 2.4e-66
Identity = 130/161 (80.75%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 20  FWRLFKPISYTLSFFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLS 79
           FWRLF+ I+    F KCEF +KKV+FLGHV+SSEGVSVDP K+EAVTSWPR STVSE+ S
Sbjct: 222 FWRLFELIN--CKFSKCEFWMKKVTFLGHVVSSEGVSVDPKKVEAVTSWPRPSTVSEIRS 281

Query: 80  FLGLVGYYRRFVEDFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDG 139
           FLGL GYYRRFVEDFSRIASPLTQLTRKGT FVWS AC+SSFQELK+KLV+ P+LTV DG
Sbjct: 282 FLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVSDG 341

Query: 140 SGSFVVYSDASKKGLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           SGSFV+YSDASKKGLGC+L+QQGKVVAY SRQLKS EQNYP
Sbjct: 342 SGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSQEQNYP 380

[Close]

BLAST of Cmc06g0166101 vs. NCBI nr
Match: KAA0033327.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.2 bits (666), Expect = 6.9e-66
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 33  FFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVE 92
           F KCEF LKKVSFLGHV+SSEGVSVDP KIEAVT+WPR STVSE+ SFLGL GYYRRFVE
Sbjct: 179 FSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVE 238

Query: 93  DFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKK 152
           DFSRI SPLTQLTRKGT FVWS AC+SSFQELK+KLVT P+LTVP GSGSFVVYSDASKK
Sbjct: 239 DFSRITSPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPHGSGSFVVYSDASKK 298

Query: 153 GLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           GLGCIL+QQGKVVAY SRQLKSHEQNYP
Sbjct: 299 GLGCILMQQGKVVAYASRQLKSHEQNYP 326

[Close]

BLAST of Cmc06g0166101 vs. NCBI nr
Match: TYK05193.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.2 bits (666), Expect = 6.9e-66
Identity = 126/148 (85.14%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 33  FFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVE 92
           F KCEF L+KV+FLGHV+SSEGVSVDP KIEAVT+WPR STVSE+ SFLGL GYYRRFVE
Sbjct: 820 FSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVE 879

Query: 93  DFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKK 152
           DFSRIASPLTQLTRKGT FVWS AC+SSFQELK+KLVT P+LTVPDGSG+FV+YSDASKK
Sbjct: 880 DFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKK 939

Query: 153 GLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           GLGC+L+QQGKVVAY SRQLKSHEQNYP
Sbjct: 940 GLGCVLMQQGKVVAYASRQLKSHEQNYP 967

[Close]

BLAST of Cmc06g0166101 vs. NCBI nr
Match: TYK21579.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 9.0e-66
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 33  FFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVE 92
           F KCEF LKKVSFLGHV+SSEGVSVDP KIEAVT+WPR STVSE+ SFLGL GYYRRFVE
Sbjct: 179 FSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIHSFLGLAGYYRRFVE 238

Query: 93  DFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKK 152
           DFSRI SPLTQLTRKGT FVWS AC+SSFQELK+KLVT P+LTVP GSGSFVVYSDASKK
Sbjct: 239 DFSRITSPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPHGSGSFVVYSDASKK 298

Query: 153 GLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           GLGCIL+QQGKVVAY SRQLKSHEQNYP
Sbjct: 299 GLGCILMQQGKVVAYASRQLKSHEQNYP 326

[Close]

BLAST of Cmc06g0166101 vs. NCBI nr
Match: TYK05232.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 9.0e-66
Identity = 126/148 (85.14%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 33  FFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVE 92
           F KCEF LKKVSFLGHV+SSEGVSVDP KIE VT+WPRLSTVSE+ SFLGL GYYRRFVE
Sbjct: 137 FSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEVVTNWPRLSTVSEICSFLGLAGYYRRFVE 196

Query: 93  DFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKK 152
           DFSRIASPL+QLTRKGT FVWS AC+SSFQELK+KLVTTP+LTVPDG GSFV+YSDASKK
Sbjct: 197 DFSRIASPLSQLTRKGTPFVWSPACESSFQELKQKLVTTPVLTVPDGLGSFVIYSDASKK 256

Query: 153 GLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           GL C+++QQGKVVAY SRQLKSHEQNYP
Sbjct: 257 GLDCVMMQQGKVVAYASRQLKSHEQNYP 284

[Close]

BLAST of Cmc06g0166101 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27
Identity = 58/150 (38.67%), Postives = 94/150 (62.67%), Query Frame = 0


Query: 31  LSFFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRF 90
           L   KCEFL K+ +FLGH+++ +G+  +P+K++A+ S+P  +   E+ +FLGL GYYR+F
Sbjct: 395 LQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKF 454

Query: 91  VEDFSRIASPLTQLTRKGTHF-VWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDA 150
           + +++ IA P+T   +K T      L    +F++LK  ++  P+L +PD    FV+ +DA
Sbjct: 455 IPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDA 514

Query: 151 SKKGLGCILIQQGKVVAYTSRQLKSHEQNY 180
           S   LG +L Q G  +++ SR L  HE NY
Sbjct: 515 SNLALGAVLSQNGHPISFISRTLNDHELNY 544

[Close]

BLAST of Cmc06g0166101 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-26
Identity = 61/150 (40.67%), Postives = 92/150 (61.33%), Query Frame = 0


Query: 31  LSFFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRF 90
           L   KCEFL ++ +FLGHVL+ +G+  +P KIEA+  +P  +   E+ +FLGL GYYR+F
Sbjct: 396 LQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKF 455

Query: 91  VEDFSRIASPLTQLTRKGTHF-VWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDA 150
           + +F+ IA P+T+  +K       +    S+F++LK  +   P+L VPD +  F + +DA
Sbjct: 456 IPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDA 515

Query: 151 SKKGLGCILIQQGKVVAYTSRQLKSHEQNY 180
           S   LG +L Q G  ++Y SR L  HE NY
Sbjct: 516 SDVALGAVLSQDGHPLSYISRTLNEHEINY 545

[Close]

BLAST of Cmc06g0166101 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-20
Identity = 52/160 (32.50%), Postives = 87/160 (54.37%), Query Frame = 0


Query: 35  KCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVEDF 94
           K  FL  +V FLG++++++G+  DP K+ A++  P  ++V E+  FLG+  YYR+F++D+
Sbjct: 316 KSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDY 375

Query: 95  SRIASPLTQLTR-----------KGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSF 154
           +++A PLT LTR                        SF +LK  L ++ +L  P  +  F
Sbjct: 376 AKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPF 435

Query: 155 VVYSDASKKGLGCILIQ----QGKVVAYTSRQLKSHEQNY 180
            + +DAS   +G +L Q    + + +AY SR L   E+NY
Sbjct: 436 HLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENY 475

[Close]

BLAST of Cmc06g0166101 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.5e-20
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 0


Query: 35  KCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVEDF 94
           K  F  + V +LG ++S +G   DP K++A+  +P    V +V SFLGL  YYR F++DF
Sbjct: 375 KTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDF 434

Query: 95  SRIASPLTQLTR-----------KGTHFVWSLACKSSFQELKKKLVTTP-LLTVPDGSGS 154
           + IA P+T + +           K     ++   +++FQ L+  L +   +L  PD    
Sbjct: 435 AAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKP 494

Query: 155 FVVYSDASKKGLGCILIQQGKVVAYTSRQLKSHEQNY 180
           F + +DAS  G+G +L Q+G+ +   SR LK  EQNY
Sbjct: 495 FDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNY 531

[Close]

BLAST of Cmc06g0166101 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.9e-20
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = 0


Query: 35  KCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVEDF 94
           KC F + +V+FLGH  + +G+  D  K + + ++P          F+    YYRRF+++F
Sbjct: 508 KCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNF 567

Query: 95  SRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKKGL 154
           +  +  +T+L +K   F W+  C+ +F  LK +L+   LL  PD S  F + +DASK+  
Sbjct: 568 ADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQAC 627

Query: 155 GCILIQQGK----VVAYTSRQLKSHEQN 179
           G +L Q        VAY SR     E N
Sbjct: 628 GAVLTQNHNGHQLPVAYASRAFTKGESN 655

[Close]

BLAST of Cmc06g0166101 vs. ExPASy TrEMBL
Match: A0A5A7V5N1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00330 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 130/161 (80.75%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 20  FWRLFKPISYTLSFFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLS 79
           FWRLF+ I+    F KCEF +KKV+FLGHV+SSEGVSVDP K+EAVTSWPR STVSE+ S
Sbjct: 222 FWRLFELIN--CKFSKCEFWMKKVTFLGHVVSSEGVSVDPKKVEAVTSWPRPSTVSEIRS 281

Query: 80  FLGLVGYYRRFVEDFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDG 139
           FLGL GYYRRFVEDFSRIASPLTQLTRKGT FVWS AC+SSFQELK+KLV+ P+LTV DG
Sbjct: 282 FLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVSDG 341

Query: 140 SGSFVVYSDASKKGLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           SGSFV+YSDASKKGLGC+L+QQGKVVAY SRQLKS EQNYP
Sbjct: 342 SGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSQEQNYP 380

[Close]

BLAST of Cmc06g0166101 vs. ExPASy TrEMBL
Match: A0A5D3BZN1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00670 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.3e-66
Identity = 126/148 (85.14%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 33  FFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVE 92
           F KCEF L+KV+FLGHV+SSEGVSVDP KIEAVT+WPR STVSE+ SFLGL GYYRRFVE
Sbjct: 820 FSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVE 879

Query: 93  DFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKK 152
           DFSRIASPLTQLTRKGT FVWS AC+SSFQELK+KLVT P+LTVPDGSG+FV+YSDASKK
Sbjct: 880 DFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKK 939

Query: 153 GLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           GLGC+L+QQGKVVAY SRQLKSHEQNYP
Sbjct: 940 GLGCVLMQQGKVVAYASRQLKSHEQNYP 967

[Close]

BLAST of Cmc06g0166101 vs. ExPASy TrEMBL
Match: A0A5A7SVJ0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001460 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.3e-66
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 33  FFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVE 92
           F KCEF LKKVSFLGHV+SSEGVSVDP KIEAVT+WPR STVSE+ SFLGL GYYRRFVE
Sbjct: 179 FSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVE 238

Query: 93  DFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKK 152
           DFSRI SPLTQLTRKGT FVWS AC+SSFQELK+KLVT P+LTVP GSGSFVVYSDASKK
Sbjct: 239 DFSRITSPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPHGSGSFVVYSDASKK 298

Query: 153 GLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           GLGCIL+QQGKVVAY SRQLKSHEQNYP
Sbjct: 299 GLGCILMQQGKVVAYASRQLKSHEQNYP 326

[Close]

BLAST of Cmc06g0166101 vs. ExPASy TrEMBL
Match: A0A5D3DE35 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00790 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 129/148 (87.16%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 33  FFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVE 92
           F KCEF LKKVSFLGHV+SSEGVSVDP KIEAVT+WPR STVSE+ SFLGL GYYRRFVE
Sbjct: 179 FSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIHSFLGLAGYYRRFVE 238

Query: 93  DFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKK 152
           DFSRI SPLTQLTRKGT FVWS AC+SSFQELK+KLVT P+LTVP GSGSFVVYSDASKK
Sbjct: 239 DFSRITSPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPHGSGSFVVYSDASKK 298

Query: 153 GLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           GLGCIL+QQGKVVAY SRQLKSHEQNYP
Sbjct: 299 GLGCILMQQGKVVAYASRQLKSHEQNYP 326

[Close]

BLAST of Cmc06g0166101 vs. ExPASy TrEMBL
Match: A0A5D3C229 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00400 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.3e-66
Identity = 126/148 (85.14%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 33  FFKCEFLLKKVSFLGHVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVE 92
           F KCEF LKKVSFLGHV+SSEGVSVDP KIE VT+WPRLSTVSE+ SFLGL GYYRRFVE
Sbjct: 137 FSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEVVTNWPRLSTVSEICSFLGLAGYYRRFVE 196

Query: 93  DFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFVVYSDASKK 152
           DFSRIASPL+QLTRKGT FVWS AC+SSFQELK+KLVTTP+LTVPDG GSFV+YSDASKK
Sbjct: 197 DFSRIASPLSQLTRKGTPFVWSPACESSFQELKQKLVTTPVLTVPDGLGSFVIYSDASKK 256

Query: 153 GLGCILIQQGKVVAYTSRQLKSHEQNYP 181
           GL C+++QQGKVVAY SRQLKSHEQNYP
Sbjct: 257 GLDCVMMQQGKVVAYASRQLKSHEQNYP 284

[Close]

BLAST of Cmc06g0166101 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-20
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 35  KCEFLLKKVSFLG--HVLSSEGVSVDPMKIEAVTSWPRLSTVSEVLSFLGLVGYYRRFVE 94
           KC F   ++++LG  H++S EGVS DP K+EA+  WP     +E+  FLGL GYYRRFV+
Sbjct: 22  KCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVK 81

Query: 95  DFSRIASPLTQLTRKGTHFVWSLACKSSFQELKKKLVTTPLLTVPDGSGSFV 145
           ++ +I  PLT+L +K +   W+     +F+ LK  + T P+L +PD    FV
Sbjct: 82  NYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPVLALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc06g0166101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063403.1	2.4e-66	80.75	reverse transcriptase [Cucumis melo var. makuwa] >TYK11661.1 reverse transcripta...	[more]
KAA0033327.1	6.9e-66	87.16	pol protein [Cucumis melo var. makuwa]	[more]
TYK05193.1	6.9e-66	85.14	pol protein [Cucumis melo var. makuwa]	[more]
TYK21579.1	9.0e-66	87.16	pol protein [Cucumis melo var. makuwa]	[more]
TYK05232.1	9.0e-66	85.14	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0166101 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.7e-27	38.67	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.9e-26	40.67	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	3.5e-20	32.50	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	4.5e-20	34.39	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P10394	5.9e-20	33.11	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of Cmc06g0166101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5N1	1.1e-66	80.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]
A0A5D3BZN1	3.3e-66	85.14	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]
A0A5A7SVJ0	3.3e-66	87.16	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001460 P...	[more]
A0A5D3DE35	4.3e-66	87.16	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00790 PE...	[more]
A0A5D3C229	4.3e-66	85.14	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00400 PE...	[more]

BLAST of Cmc06g0166101 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.6e-20	41.96	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 60..152 e-value: 4.3E-29 score: 102.4
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 113..180 e-value: 9.6E-18 score: 64.0
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 54..180
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 54..180
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 23..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0166101.1	Cmc06g0166101.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding