Cmc06g0165231 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc06g0165231
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr06: 16768105 .. 16768428 (-)
RNA-Seq Expression	Cmc06g0165231
Synteny	Cmc06g0165231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTGGATGAACAGAGTGTTCAGGGAGTTCCTAGATACTTTCGTGATTGTGTTTATCGACGATATCTTGATATACTCTAAGACGGAGGCCGAACACGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGTTTTGGCTGAAACAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTGGTTGGGACCCGACCTTCCACAGTCAGTGA

mRNA sequence

ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTGGATGAACAGAGTGTTCAGGGAGTTCCTAGATACTTTCGTGATTGTGTTTATCGACGATATCTTGATATACTCTAAGACGGAGGCCGAACACGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGTTTTGGCTGAAACAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTGGTTGGGACCCGACCTTCCACAGTCAGTGA

Coding sequence (CDS)

ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTGGATGAACAGAGTGTTCAGGGAGTTCCTAGATACTTTCGTGATTGTGTTTATCGACGATATCTTGATATACTCTAAGACGGAGGCCGAACACGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGTTTTGGCTGAAACAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTGGTTGGGACCCGACCTTCCACAGTCAGTGA

Protein sequence

MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWDPTFHSQ

Homology

[Close]

BLAST of Cmc06g0165231 vs. NCBI nr
Match: KAA0062124.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 892 MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 951

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Sbjct: 952 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTDW 991

[Close]

BLAST of Cmc06g0165231 vs. NCBI nr
Match: KAA0060256.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 6.5e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 671 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 730

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Sbjct: 731 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 770

[Close]

BLAST of Cmc06g0165231 vs. NCBI nr
Match: KAA0036671.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 6.5e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1    MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
            MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 947  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 1006

Query: 61   LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
            LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Sbjct: 1007 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 1046

[Close]

BLAST of Cmc06g0165231 vs. NCBI nr
Match: KAA0066266.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 6.5e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 268 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 327

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Sbjct: 328 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 367

[Close]

BLAST of Cmc06g0165231 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 6.5e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 694 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 753

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Sbjct: 754 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 793

[Close]

BLAST of Cmc06g0165231 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+  +
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSY 432

[Close]

BLAST of Cmc06g0165231 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAV 98
           L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAI 430

[Close]

BLAST of Cmc06g0165231 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-14
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           M +G++ APA F  ++N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW 633

[Close]

BLAST of Cmc06g0165231 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-14
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           M +G++ APA F  ++N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW 633

[Close]

BLAST of Cmc06g0165231 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-14
Identity = 38/100 (38.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           M +G++ APA F  ++N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW 633

[Close]

BLAST of Cmc06g0165231 vs. ExPASy TrEMBL
Match: A0A5A7V492 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004830 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.8e-48
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 892 MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 951

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W
Sbjct: 952 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTDW 991

[Close]

BLAST of Cmc06g0165231 vs. ExPASy TrEMBL
Match: A0A5A7VIT9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003090 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 268 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 327

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Sbjct: 328 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 367

[Close]

BLAST of Cmc06g0165231 vs. ExPASy TrEMBL
Match: A0A5A7UDB1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00190 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 688 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 747

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Sbjct: 748 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 787

[Close]

BLAST of Cmc06g0165231 vs. ExPASy TrEMBL
Match: A0A5A7TXE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00060 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 491 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 550

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Sbjct: 551 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 590

[Close]

BLAST of Cmc06g0165231 vs. ExPASy TrEMBL
Match: A0A5A7V223 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3980G00010 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDWMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 60
           MSFGLTNAPAVFMD MNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Sbjct: 856 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 915

Query: 61  LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 101
           LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW
Sbjct: 916 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGW 955

[Close]

BLAST of Cmc06g0165231 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-09
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 48  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGW 101
           HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGW 57

The following BLAST results are available for this feature:

BLAST of Cmc06g0165231 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062124.1	3.8e-48	98.00	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0060256.1	6.5e-48	99.00	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036671.1	6.5e-48	99.00	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066266.1	6.5e-48	99.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	6.5e-48	99.00	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc06g0165231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.8e-16	39.00	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.4e-15	40.21	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P0CT41	1.7e-14	38.00	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.7e-14	38.00	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.7e-14	38.00	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc06g0165231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V492	1.8e-48	98.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89...	[more]
A0A5A7VIT9	3.1e-48	99.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7UDB1	3.1e-48	99.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10...	[more]
A0A5A7TXE4	3.1e-48	99.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5A7V223	3.1e-48	99.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39...	[more]

BLAST of Cmc06g0165231 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	4.8e-09	49.09	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 2.2E-17 score: 63.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 9.572583
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 7.5E-36 score: 125.0
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..99
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 1..99
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 9.24392E-40 score: 128.482
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc06g0165231.1	Cmc06g0165231.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding